TCONS_00064603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064603
Unique NameTCONS_00064603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length267

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064603 ID=TCONS_00064603|Name=TCONS_00064603|organism=Clytia hemisphaerica|type=transcript|length=267bp
CCAGACGTTGCGATTATTAATTATTGTGATTGCGATTGATTGATGCATGA
GTTGGGCGGCAAtcgaaaatatgttccgttcgcgtcaaaaatcttcttaa
aattgagtcggtcggtcggaagtaaatttagtcgggttttttggaaaatg
gtttcaaagtatatatagtttttaataTTATTTATTCGTTCGCTTGATGA
AAAATTCTGACAATTTTCTGACTCGTCTGACTAGGAATTTTTGTCTGCCA
AGTTGGTCAGTCGGCTG
Run BLAST on NCBI

transcript from alignment at scaffold_419:54850..55116

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064603 ID=TCONS_00064603|Name=TCONS_00064603|organism=Clytia hemisphaerica|type=transcript|length=267bp|location=Sequence derived from alignment at scaffold_419:54850..55116 (Clytia hemisphaerica)
CAGCCGACTGACCAACTTGGCAGACAAAAATTCCTAGTCAGACGAGTCAG
AAAATTGTCAGAATTTTTCATCAAGCGAACGAATAAATAAtattaaaaac
tatatatactttgaaaccattttccaaaaaacccgactaaatttacttcc
gaccgaccgactcaattttaagaagatttttgacgcgaacggaacatatt
ttcgaTTGCCGCCCAACTCATGCATCAATCAATCGCAATCACAATAATTA
ATAATCGCAACGTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040512XLOC_040512Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064603-exon-scaffold_419-1491911889:54850..55116TCONS_00064603-exon-scaffold_419-1491911889:54850..55116Clytia hemisphaericaexon
TCONS_00064603-exon-scaffold_419-1510915933:54850..55116TCONS_00064603-exon-scaffold_419-1510915933:54850..55116Clytia hemisphaericaexon
TCONS_00064603-exon-scaffold_419-1575043694:54850..55116TCONS_00064603-exon-scaffold_419-1575043694:54850..55116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:54850..55116 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.576983	0	0	0.797917	1.41259	0.760701	0	0.518285	0.784694	0	0	0.787019	0	0.365322	0.457107	0	0	0	0	0.616225	1.93251	0	0.616774	0	0.566957	1.90583	0.865856	1.45308	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top