TCONS_00064583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064583
Unique NameTCONS_00064583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064583 ID=TCONS_00064583|Name=TCONS_00064583|organism=Clytia hemisphaerica|type=transcript|length=513bp
GATCCTGCCTCTcgcaaaaacaaagaaaaagcgaAAATAGCATCAATTCG
AAGAAATATACGCGACGCGGCTGTATTAACCAAGATGCCGAGTGCATTTT
TTGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGCTCAACAAAAGCAATG
AAAGAGTTTTTGAACGACGAATCTATTAAACGTCGCTTTCTTGAATGTGC
GAAAGCTAATCCGGAAGTGGAGTCGTCAGATGATGAAGAACCAATAGCTG
AAAGTAGTCCAAGCAGTAAGCAAGAAAGTGCAACATATCCCTTGGAGGAA
GGATGGAATACTGGCAACGTCCATAAAAAAAGGAAGGTCATCCGAGATAT
CGTGGTTTGGGATTCAGGTTTGGGGGACGCTTTCAAATGGGACAAGGAAA
GAACACCATTCTGGTGGCCGTCTAACCTTACATTCGGTAACATGAAAAGT
GTGAATGTTGCATCTTGCGATCGAATACTCGATGCTTACCGAAAGATGTT
GATAAAGTCGAGG
Run BLAST on NCBI

protein sequence of TCONS_00064583-protein

>TCONS_00064583-protein ID=TCONS_00064583-protein|Name=TCONS_00064583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
DPASRKNKEKAKIASIRRNIRDAAVLTKMPSAFFAFSEGKVEVIGSTKAM
KEFLNDESIKRRFLECAKANPEVESSDDEEPIAESSPSSKQESATYPLEE
GWNTGNVHKKRKVIRDIVVWDSGLGDAFKWDKERTPFWWPSNLTFGNMKS
VNVASCDRILDAYRKMLIKSR
Run BLAST on NCBI

transcript from alignment at scaffold_419:409448..410857-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064583 ID=TCONS_00064583|Name=TCONS_00064583|organism=Clytia hemisphaerica|type=transcript|length=1410bp|location=Sequence derived from alignment at scaffold_419:409448..410857- (Clytia hemisphaerica)
GATCCTGCCTCTCGCAAAAACAAAGAAAAAGCGAAAATAGCATCAATTCG
AAGAAATGTAAGTTAAATCTTGTCATATATGAAAGGAAACAGTATATGAT
TCCAATTTGTTGTTGTAAAACCAATTTCTTTGATTTTATAACTACAAAAG
ACTCCTCTAATGAACATCATTTTATTTGGTAAGCATTGGCAGATTTAACT
CTTGATCGAGACTTCATTTTCTGCTCTCTGTAGAAGATATTTTGAATCGT
TGGAAAAGTAAAAGAAAATATTATAATATTCTGCATAATGCATTTTTTTG
CTCTATTTTAAGATACGCGACGCGGCTGTATTAACCAAGATGCCGAGTGC
ATTTTTTGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGTAAGTACCAAG
CAGATTACCTACAATCTTAATGTTTAAAACAACTGATCTTAAGTGACACT
AATCACAAAAAGACCATTATAAAAAAAGAATCAAAAAGACTGTTTCAGAC
GTACTTTATAATAATATATTTCACTCTTCTCAGGCTCAACAAAAGCAATG
AAAGAGTTTTTGAACGACGAATCTATTAAACGTCGCTTTCTTGAATGTGC
GAAAGCTAATCCGGAAGTGGAGTCGTCAGATGATGAAGAACCAATAGCTG
AAAGTAGTCCAAGTAAAATTTCCTACTTTTCTCCGATTTCCGACATTCTA
CCAGTGTTGATTATTATTTTTCTACACATTAAACAAACAAACTCTATGAT
GAAAATTTAAGCTATTTCTTTTAGCTCAAATTGTAAAATTAAATGTTATG
TCGAAAAGACATAATTAGAGTTTCAAGAATTAATTCACACCGTGCTTTCC
GAAGTGTGAAATTGAATCTGAATTGCCATCCCCTATCCTTATTTTTACTT
ATTTTGTTTATAGGCAGTAAGCAAGAAAGTGCAACATATCCCTTGGAGGA
AGGATGGAATACTGGCAACGTCCATAAAAAAAGGAAGGTCATCCGAGATA
TCGTGGTTTGGGATTCAGGTACATGATTTTCAGTACGGCATTTAATTATC
ATTGCAAAGAAGTCTTTCTAAGAATGAACAAAATATAAAGAGGATGGGTC
AGTTATTTTCAACCTATGAGTATTCCTGTTTAGTTTTTCAAATCTAAGAA
TTTCCGTAAAAATTAACTCTTTTTAAATCTATTTTATTGTTTGTACAAAC
TTTCGAATTAAGTATCTTTTCGTCTTGAACAAAACTTTTTATTGTTTTTC
TAATTTCTGTTCAGGTTTGGGGGACGCTTTCAAATGGGACAAGGAAAGAA
CACCATTCTGGTGGCCGTCTAACCTTACATTCGGTAACATGAAAAGTGTG
AATGTTGCATCTTGCGATCGAATACTCGATGCTTACCGAAAGATGTTGAT
AAAGTCGAGG

Coding sequence (CDS) from alignment at scaffold_419:409448..410857-

>TCONS_00064583 ID=TCONS_00064583|Name=TCONS_00064583|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at scaffold_419:409448..410857- (Clytia hemisphaerica)
GTTTGGGGGACGCTTTCAAATGGGACAAGGAAAGAACACCATTCTGGTGG
CCGTCTAACCTTACATTCGGTAACATGAAAAGTGTGAATGTTGCATCTTG
CGATCGAATACTCGATGCTTACCGAAAGATGTTGATAAAGTCGAGGGCAG
TAAGCAAGAAAGTGCAACATATCCCTTGGAGGAAGGATGGAATACTGGCA
ACGTCCATAAAAAAAGGAAGGTCATCCGAGATATCGTGGTTTGGGATTCA
GGCTCAACAAAAGCAATGAAAGAGTTTTTGAACGACGAATCTATTAAACG
TCGCTTTCTTGAATGTGCGAAAGCTAATCCGGAAGTGGAGTCGTCAGATG
ATGAAGAACCAATAGCTGAAAGTAGTCCAAATACGCGACGCGGCTGTATT
AACCAAGATGCCGAGTGCATTTTTTGCCTTCTCTGAAGGTAAAGTAGAAG
TAATTGGATCCTGCCTCTCGCAAAAACAAAGAAAAAGCGAAAATAGCATC
AATTCGAAGAAATGTTTGGGGGACGCTTTCAAATGGGACAAGGAAAGAAC
ACCATTCTGGTGGCCGTCTAACCTTACATTCGGTAACATGAAAAGTGTGA
ATGTTGCATCTTGCGATCGAATACTCGATGCTTACCGAAAGATGTTGATA
AAGTCGAGGGCAGTAAGCAAGAAAGTGCAACATATCCCTTGGAGGAAGGA
TGGAATACTGGCAACGTCCATAAAAAAAGGAAGGTCATCCGAGATATCGT
GGTTTGGGATTCAGGCTCAACAAAAGCAATGAAAGAGTTTTTGAACGACG
AATCTATTAAACGTCGCTTTCTTGAATGTGCGAAAGCTAATCCGGAAGTG
GAGTCGTCAGATGATGAAGAACCAATAGCTGAAAGTAGTCCAAATACGCG
ACGCGGCTGTATTAACCAAGATGCCGAGTGCATTTTTTGCCTTCTCTGAA
GGTAAAGTAGAAGTAATTGGATCCTGCCTCTCGCAAAAACAAAGAAAAAG
CGAAAATAGCATCAATTCGAAGAAATGTTTGGGGGACGCTTTCAAATGGG
ACAAGGAAAGAACACCATTCTGGTGGCCGTCTAACCTTACATTCGGTAAC
ATGAAAAGTGTGAATGTTGCATCTTGCGATCGAATACTCGATGCTTACCG
AAAGATGTTGATAAAGTCGAGGGCAGTAAGCAAGAAAGTGCAACATATCC
CTTGGAGGAAGGATGGAATACTGGCAACGTCCATAAAAAAAGGAAGGTCA
TCCGAGATATCGTGGTTTGGGATTCAGGCTCAACAAAAGCAATGAAAGAG
TTTTTGAACGACGAATCTATTAAACGTCGCTTTCTTGAATGTGCGAAAGC
TAATCCGGAAGTGGAGTCGTCAGATGATGAAGAACCAATAGCTGAAAGTA
GTCCAAATACGCGACGCGGCTGTATTAACCAAGATGCCGAGTGCATTTTT
TGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGATCCTGCCTCTCGCAAA
AACAAAGAAAAAGCGAAAATAGCATCAATTCGAAGAAATGTTTGGGGGAC
GCTTTCAAATGGGACAAGGAAAGAACACCATTCTGGTGGCCGTCTAACCT
TACATTCGGTAACATGAAAAGTGTGAATGTTGCATCTTGCGATCGAATAC
TCGATGCTTACCGAAAGATGTTGATAAAGTCGAGGGCAGTAAGCAAGAAA
GTGCAACATATCCCTTGGAGGAAGGATGGAATACTGGCAACGTCCATAAA
AAAAGGAAGGTCATCCGAGATATCGTGGTTTGGGATTCAGGCTCAACAAA
AGCAATGAAAGAGTTTTTGAACGACGAATCTATTAAACGTCGCTTTCTTG
AATGTGCGAAAGCTAATCCGGAAGTGGAGTCGTCAGATGATGAAGAACCA
ATAGCTGAAAGTAGTCCAAATACGCGACGCGGCTGTATTAACCAAGATGC
CGAGTGCATTTTTTGCCTTCTCTGAAGGTAAAGTAGAAGTAATTGGATCC
TGCCTCTCGCAAAAACAAAGAAAAAGCGAAAATAGCATCAATTCGAAGAA
ATGTTTGGGGGACGCTTTCAAATGGGACAAGGAAAGAACACCATTCTGGT
GGCCGTCTAACCTTACATTCGGTAACATGAAAAGTGTGAATGTTGCATCT
TGCGATCGAATACTCGATGCTTACCGAAAGATGTTGATAAAGTCGAGGGC
AGTAAGCAAGAAAGTGCAACATATCCCTTGGAGGAAGGATGGAATACTGG
CAACGTCCATAAAAAAAGGAAGGTCATCCGAGATATCGTGGTTTGGGATT
CAGGCTCAACAAAAGCAATGAAAGAGTTTTTGAACGACGAATCTATTAAA
CGTCGCTTTCTTGAATGTGCGAAAGCTAATCCGGAAGTGGAGTCGTCAGA
TGATGAAGAACCAATAGCTGAAAGTAGTCCAAATACGCGACGCGGCTGTA
TTAACCAAGATGCCGAGTGCATTTTTTGCCTTCTCTGAAGGTAAAGTAGA
AGTAATTGGATCCTGCCTCTCGCAAAAACAAAGAAAAAGCGAAAATAGCA
TCAATTCGAAGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040500XLOC_040500Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064583-proteinTCONS_00064583-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064583-exon-scaffold_419-1575043694:410801..410857TCONS_00064583-exon-scaffold_419-1575043694:410801..410857Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1575043694:410470..410545TCONS_00064583-exon-scaffold_419-1575043694:410470..410545Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1575043694:410196..410324TCONS_00064583-exon-scaffold_419-1575043694:410196..410324Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1575043694:409840..409944TCONS_00064583-exon-scaffold_419-1575043694:409840..409944Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1575043694:409448..409593TCONS_00064583-exon-scaffold_419-1575043694:409448..409593Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1510915933:410801..410857TCONS_00064583-exon-scaffold_419-1510915933:410801..410857Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1510915933:410470..410545TCONS_00064583-exon-scaffold_419-1510915933:410470..410545Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1510915933:410196..410324TCONS_00064583-exon-scaffold_419-1510915933:410196..410324Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1510915933:409840..409944TCONS_00064583-exon-scaffold_419-1510915933:409840..409944Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1510915933:409448..409593TCONS_00064583-exon-scaffold_419-1510915933:409448..409593Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1491911889:410801..410857TCONS_00064583-exon-scaffold_419-1491911889:410801..410857Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1491911889:410470..410545TCONS_00064583-exon-scaffold_419-1491911889:410470..410545Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1491911889:410196..410324TCONS_00064583-exon-scaffold_419-1491911889:410196..410324Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1491911889:409840..409944TCONS_00064583-exon-scaffold_419-1491911889:409840..409944Clytia hemisphaericaexon
TCONS_00064583-exon-scaffold_419-1491911889:409448..409593TCONS_00064583-exon-scaffold_419-1491911889:409448..409593Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:409448..410857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.160112	0.300559	0.183878	0	0.274975	0.447021	1.0932	0.908907	0.442783	0.692126	0.617022	0.204959	0.490807	0.917984	0	0	0.676878	0.128794	0	0.214749	0	0.638826	0	0	0.376148	0.27387	0	0	0	0.496994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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