TCONS_00064575 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064575
Unique NameTCONS_00064575
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064575 ID=TCONS_00064575|Name=TCONS_00064575|organism=Clytia hemisphaerica|type=transcript|length=1591bp
GGAAAATGTGTCTTCGGGAGAAAGATCTATTCACACGATTTAAAAGTCAC
AGCTTGGGAAGTGTTTAAAAGCCACTTGAGTCAGTGGTGGGTGACATTTC
AAAGATACTGCGTACATGCAAAAGTTATAAAATTACGCATTGCCTAGGAT
AAAGTATGATTTTGCTATAGTTATTTTCCACACGCAAGCTTTTACCTAAT
GTAAGAGTGAGCGATAACGAAAAATGCGTACAAAAATGTCTTTCAAGGCG
GCAATTTTTATGGTGTTGTTTTTGAGAACGTCCAAAGCAGCCATTTCTTA
TGATGACTGTAAGGCTGGCGATGCAATCTTCAAGAAATCGAAAACAGAGC
TTATTATTCATGGATCAGTGGAATGGGAAGAATCTTTTCAGGTATAATAC
GattatttccttttttcatcTTAGACACTCACTCACTTAAGAATATTCTT
TTCAAAATGGCTCTTCTTGCTCTGCTGATTGTGAACATCTTCACACCTGT
TCCATCCCAGCTGACTTATTTAACGTTGTTACAATGTTCACGTTCACCTA
ACGGTATATGGGTGTTGTGGAAATTATGTTTGTAGATTTTGAAGATACTG
TGACTATATTCTTTCTACTTAAAGGTTACAAACGATATGCAATGCTCAAT
GGCGTGTAGGAAACATACCAATTGTCAATCGGCTATTGTAAACGAGTCAA
ATACATGTACTTTAAGGGATGTCAACCGACGTTCAGCTCAAGTTACCTTC
AAACCAAATCCTTCGTTAAGGTATTTTGAGCGCCACGCATGCCCACCAAG
TGTAGAACAAGCTTTTATAGCTTTCGTATCTGAtgttgaaaattgtaaag
acaTTTACGCGAAGGGTCATTTACAAAATGGTATTTACGCTATCAAGCTA
AGCTCTGGTGTTTACCAGCCAATACGTTGTAACATGGTTAATCAAGATGA
AGGAGGCTGGACTATAGTTTTGAGACGGCTTAGTGGTATAGTGCCATTTG
ATAAAAATTGGGAAACATTCAAATCTGGTTTTGGTTCACTAGATACGGAA
TTTTATATCGGGAATGAACGATTCCATCAATTAACTCAAAATGGAactca
aaagttttttatcaaaatggttTTAAGAGGAGGCAACGTCCGAAATATGA
TTTTTGACGAAGTGCGCATTGGTTCCGAAGCTGAAAAATATTCATTGAAC
ATAGGTGATGCAATGACTGGTTCTTACGACACCTCAGGAGGTAAATTGAA
GAACCAGAATGACGGAAAGAAATTTACTACTTATGACCAGGATAACGACA
ATTCAGATAACATCAATTGTAGTCACAACAATGAAAATCACGGATGGTGG
TATCAAAGATGTGGTGCTGTAAATCTTCATGGTGTTTGGAGTCATACTAA
TGGTGGGTCACCCGGAATCCGCTGGAGTGGAGTCGATGATGTCAATGGGC
AAAGtgaaaacattgaaaaggtTTATTACTACATCAAGTGACTTTCAAAC
CTGTGCATGATGGTCTGGTTGAAAATTGAccgtttttttgtgtttttttt
ctttcaaatcgtGCAAGATTTTTTTGTATAcccaacttcag
Run BLAST on NCBI

transcript from alignment at scaffold_419:359905..364345-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064575 ID=TCONS_00064575|Name=TCONS_00064575|organism=Clytia hemisphaerica|type=transcript|length=4441bp|location=Sequence derived from alignment at scaffold_419:359905..364345- (Clytia hemisphaerica)
GGAAAATGTGTCTTCGGGAGAAAGATCTATTCACACGATTTAAAAGTCAC
AGCTTGGGAAGTGTTTAAAAGCCACTTGAGTCAGTGGTGGGTGACATTTC
AAAGATACTGCGTACATGCAAAAGTTATAAAATTACGCATTGCCTAGGAT
AAAGTATGATTTTGCTATAGTTATTTTCCACACGCAAGCTTTTACCTAAT
GTAAGAGTGAGCGATAACGAAAAATGCGTACAAAAATGTCTTTCAAGGCG
GCAATTTTTATGGTGTTGTTTTTGAGAACGTCCAAAGCAGCCATTTCTTA
TGATGACTGTAAGGCTGGCGATGCAATCTTCAAGAAATCGAAAACAGAGC
TTATTATTCATGGATCAGTGGAATGGGAAGAATCTTTTCAGGTATAATAC
GATTATTTCCTTTTTTCATCTTAGACACTCACTCACTTAAGAATATTCTT
TTCAAAATGGCTCTTCTTGCTCTGCTGATTGTGAACATCTTCACACCTGT
TCCATCCCAGCTGACTTATTTAACGTTGTTACAATGTTCACGTTCACCTA
ACGGTATATGGGTGTTGTGGAAATTATGTTTGTAGATTTTGAAGATACTG
TGACTATATTCTTTCTACTTAAAGGTTACAAACGATATGCAATGCTCAAT
GGCGTGTAGGAAACATACCAATTGTCAATCGGCTATTGTAAACGAGTCAA
ATACATGTACTTTAAGGGATGTCAACCGACGTTCAGCTCAAGTTACCTTC
AAACCAAATCCTTCGTTAAGGTATTTTATGATTTGTTACTAACTGTCTAG
CTGGAAATATGAATTTTGGACAATAGTATTTTTCCCAAGAACTGTTTTAT
AGTAGTCTGAATCGCAGACTACTATAGATTTATTGGGGGTAAAAGATGTA
TTGTCAAAGGGGTATCGGAAAAATTTCCATGTCATTATTGGTTGATTTAA
TGCTTGTCAACTGGGTGGATTTCTGATGCTTGTCCAGGGGTGGGTGAAAC
ACTTGTTGGAGAGCCTTTGTTAGCAACTTTATTGTTTGAAATTGTTTCCA
TGGTAACGTATTTGGCTTCATCAAACAAGTTATAATTATTTTTGAAGAAA
TATTTCATATTAGTTACTCCATATCTCAGTTTAAGCACCAAACAATTTAC
GACGGATGGTTTTAATTAGGGCGTAACCGATTAAACTTTCTTAGTCTAAA
TCCTAATCTATGACATGAATTTTAAGTAGCAAGTTTTGTGCTTTTTTAGT
CCTCAACTTCGAAAATATCCCATGTAAAACATAAAACTCGTCGTCATGAT
AGTCTAGCAAGCTAGACGACTAATTTATACATAGTAGAAATAAAGCAAAA
AGTAATAAATGGAACAATTTTAGTCGTCTAGAAACATTTGTGCACTAACT
CCAAACGAAAGAAAAGTGTCAATATTTGCAATTATAATTTTTTCCTGCTC
AAAATAATTCTTGAGAAAAGAAATATGTGTGGATTTGTGTATTGAAAGTT
TTTCATTTGAGTTGATTTCGTTTTGAGAGTTTGTTGTTGCTTGATAAATT
GTTTTCTCGCTACGCAAGTTTCTGCGTAGCTAGCCCCTGTATCAATAAGG
CAGGAACACCGGATTCTCCCAGTCGCTTATAAAAACTAAATCCCGTATTA
TTATTATTGTTAGTATTGGTATTATTAGTATTACACGCATTATAAACGAC
TCCAGTCTATCGTCATGATTAACCTCGCTGATATGAACGAAAGCGCGGAG
GAAGTCATTAACATTCATTTTCAAACAAGCTTGTCTTTTCATTTTGTAGG
TATTTTGAGCGCCACGCATGCCCACCAAGTGTAGAACAAGCTTTTATAGC
TTTCGTATCTGATGTTGAAAATTGTAAAGACATTTACGCGAAGGGTCATT
TACAAAATGGTATTTACGCTATCAAGCTAAGCTCTGGTGTTTACCAGCCA
ATACGTTGTAACATGGTTAATCAAGGTAAATATTTTACTCGCCCGCCCTG
TCTCCTCGCTTATGACCTTGTGAATATTTTCAATCCTAGAGGAAACCCCC
CCCCCGCCTTTGCGTCAATAATTATTTCTGTATTAGCGAANCAATTCTAG
AGGAAACCCCCGCCCGCCTTTGCGTCAATAATTATTTTTGTATTAGCGAA
ATGTTTTGCAAAATCGATCCACCAAGAGTTCTTGATGATTCTATGTCAAT
ACAACCAGAGCATAATCATATTAGGTTTGACAAAAAATAATCCAATCCAT
TTAGTTTTTCCTTTCACGAATCTCCAGCTAATAAAATGTTGAAAGACTAC
CACTACTTTCTGTATTAGCCACTTTTTTCAGAGTCGTTAAAATTTTCAGG
TCTGTTCATTTTTCCCCAAAAGTTCAAGAAAAAGGACTTATCTGTGATAA
AAGATGAAGAACATGCAATATCCGCCAAATAAACGCCACCAAATTTTGAT
TATTATTCTCCAAATAGTATCATCCGCGAAATTCAGTCCCCGTGATTGAA
ACTAAACTATGCAATTTTATCCCATTAAAAGTATTCCTATTTAATTTTCT
ACAGATGAAGGAGGCTGGACTATAGTTTTGAGACGGCTTAGTGGTATAGT
GCCATTTGATAAAAATTGGGAAACATTCAAATCTGGTTTTGGTTCACTAG
ATACGGAATTTTATATCGGGAATGAACGATTCCATCAATTAACTCAAAAT
GGAACTCAAAAGTTTTTTATCAAAATGGTTTTAAGAGGAGGTAAGAGATA
TAGAGATGGTAGAAGAGCGTATATTTCTTGACTGCACAAAAATTAAAAAG
GCGAATTTTATAAAGAAATTCCATTTTTAACACTCCCCTCTTCAAACCTT
TGGTACATTTTCCATCAAAGAAATGAATAGGATTAAGGTTTATCGTGTTG
NCCTTTGGTACATTTTCCATCAAAGAAATGAATAGGGTTAAGGTTTATCG
TGTTGAAATTTCTTTACTTCTTTTTGCCATCATATTTCATACTTTTGGTA
CGATAGTAATTGACAGTTTGTATTTTCAAGGTGTAGATATCTTATTTGCT
ATCTCAGTGCAAATTAAAATGTATGAAAATAATACCAATGCCAATGAAAG
AAAACTTAATACGTTTTTCTTCTACATAANATCTTATTTGCTATCTCAGT
GCAAATTAAAATGTATGAAAATAATACCAATGCCAATGAAAGAAAACTTG
ATACGTTTTTCTTCTACATAATATTTCAGGCAACGTCCGAAATATGATTT
TTGACGAAGTGCGCATTGGTTCCGAAGCTGAAAAATATTCATTGAACATA
GGTAACTATCTTGCCCCATGAGTGATTGCCAACTTGGTCAAATGTGTCAC
TGCTACAAAACATAGGTTTGTGGTCCGAATCCCCGCTCTTTCCCCATGTT
CCATTCAGTTCATAGATAGCCCAGCCGGTTGGCTACGGACCCTGTAAAAA
CAACGAAAAAAAATGTCTAAAAAGTCCTAGATTACTGGGCTACGCATGTA
AAGTAGCGACTTTATCTATCTATAGGTGATGCAATGACTGGTTCTTACGA
CACCTCAGGAGGTAAATTGAAGAACCAGAATGACGGAAAGAAATTTACTA
CTTATGACCAGGATAACGACAATTCAGGTAATTATCTCTTGTAGTTTCCA
GTGCTCAGACCACGACAATGCGTAGAGTTACGGATTTCGCCCACGTGGTC
ATTTAACATCTTTTCAGTACACCCGATCATCACCGTTGATTTTTCCTTTA
TTATCTCTGTACATACAGTTTTGAGCTTTTTAGAAAGGTCGAGAATATTT
GCTGACGTAGCAATAATATATGCGAAAATTTTTGGCCTTTTTTCGCTTAC
ATTTCATGGAGAAAATGCAAAGTCGGATCGCTGTGCCCTGAGAAAAACCT
ACAAATTTGTTGAAATTATTTTCAAAGTTGTCTTTATCTCAGGCAATTAT
ATTTTTCGAATTCAAATCTACTAAACTTTTTCTAAAAAAACGTTACAAAT
CATATTGCCTAGACTTTGATAGGTATTTTAATATCTGTAAAAGATAACAT
ATACAAAGTATAGAATATTAAAGGTTCTTAACTTCCCATAAAACACGAGT
AAATTAAACCACCGGGAACGAAATATTATACGCATCTGAATTTTAAATAA
TTTCAGATAACATCAATTGTAGTCACAACAATGAAAATCACGGATGGTGG
TATCAAAGATGTGGTGCTGTAAATCTTCATGGTGTTTGGAGTCATACTAA
TGGTGGGTCACCCGGAATCCGCTGGAGTGGAGTCGATGATGTCAATGGGC
AAAGTGAAAACATTGAAAAGGTTTATTACTACATCAAGTGACTTTCAAAC
CTGTGCATGATGGTCTGGTTGAAAATTGACCGTTTTTTTGTGTTTTTTTT
CTTTCAAATCGTGCAAGATTTTTTTGTATACCCAACTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040496XLOC_040496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064575-exon-scaffold_419-1575043694:363576..364345TCONS_00064575-exon-scaffold_419-1575043694:363576..364345Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1575043694:362371..362546TCONS_00064575-exon-scaffold_419-1575043694:362371..362546Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1575043694:361606..361791TCONS_00064575-exon-scaffold_419-1575043694:361606..361791Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1575043694:361045..361116TCONS_00064575-exon-scaffold_419-1575043694:361045..361116Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1575043694:360719..360820TCONS_00064575-exon-scaffold_419-1575043694:360719..360820Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1575043694:359905..360189TCONS_00064575-exon-scaffold_419-1575043694:359905..360189Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:363576..364345TCONS_00064575-exon-scaffold_419-1510915933:363576..364345Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:362371..362546TCONS_00064575-exon-scaffold_419-1510915933:362371..362546Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:361606..361791TCONS_00064575-exon-scaffold_419-1510915933:361606..361791Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:361045..361116TCONS_00064575-exon-scaffold_419-1510915933:361045..361116Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:360719..360820TCONS_00064575-exon-scaffold_419-1510915933:360719..360820Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1510915933:359905..360189TCONS_00064575-exon-scaffold_419-1510915933:359905..360189Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:363576..364345TCONS_00064575-exon-scaffold_419-1491911889:363576..364345Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:362371..362546TCONS_00064575-exon-scaffold_419-1491911889:362371..362546Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:361606..361791TCONS_00064575-exon-scaffold_419-1491911889:361606..361791Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:361045..361116TCONS_00064575-exon-scaffold_419-1491911889:361045..361116Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:360719..360820TCONS_00064575-exon-scaffold_419-1491911889:360719..360820Clytia hemisphaericaexon
TCONS_00064575-exon-scaffold_419-1491911889:359905..360189TCONS_00064575-exon-scaffold_419-1491911889:359905..360189Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:359905..364345 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.419479	0.414793	0.637728	0.695938	0	0	0	0	0	0	0.233205	0	0.665633	0.465264	0.232501	0.122663	0	0.538726	0.424343	0.9207	0.864754	0.785843	0	0.176061	0	0.161681	0	0.265876	0.1551	0.446885
Blast
[Close]
BLAST of TCONS_00064575 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.429e-28
Identity = 73/202 (36.14%), Postives = 109/202 (53.96%), Query Frame = 1 
Query:  841 NCKDIYAKGHLQNGIYAIKLSSGVYQPIRCNMVNQDEGGWTIVLRRLSGIVPFDKNWETFKSGFGSLDTEFYIGNERFHQLTQNGTQKFFIKMVLRGGNVRNMIFDEVRIGSEAEKYSLNIGDAMTGSYDTSGGKLKNQNDGKKFTTYDQDNDNSDNINCSHNNENHGWWYQRCGAVNLHGVW------SHTNGGSPGIRWS 1428
            NCKD+  +G+  +G + I L       + C+M + D GGWT+  RR+ G V F ++W  +K GFGS   EF++GN+  H LT  G+ +  + +V   GN +   +   ++  EAEKY L +G  + GS   +G  L   N+   F+T DQDND S + NC+   +   WWY  C A NL+G++      S+ N    GI WS
Sbjct:  117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDM-DTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS---AGNSLTGHNN-NFFSTKDQDNDVSSS-NCAEKFQG-AWWYADCHASNLNGLYLMGPHESYAN----GINWS 307
The following BLAST results are available for this feature:
BLAST of TCONS_00064575 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN13.429e-2836.14Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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