TCONS_00064572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064572
Unique NameTCONS_00064572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064572 ID=TCONS_00064572|Name=TCONS_00064572|organism=Clytia hemisphaerica|type=transcript|length=821bp
atgAGTTTGACATGTTATTTATTGAACGATGTTTGGATTAATGATGGCTT
GACttatcttttttcttcggatttatttttcatgaagTTTTCATGCAGCG
atgaaaaagATTCACTTTATGACGATAGCGTTTTTACTCGCTAGTAACCT
ATTCATCCACCAAGCTCAAGCATCAAAGACTTCAAGTCCTTGTCGTTACA
AAACAGCtctcaaaaacttgattttttttgggcaGACATCAAAACCTACA
CGCGATGCGGAAAATGCAAAACAATGTGTGGCCTCATGCAACAAAATCAA
GACACCGAAATACAAATCTGCTGTTATTTATGCTCACCAGTGCTTTTGCA
GCAAAGCAAGACATATTTTCAATTCTGCCTCGTTTACATGTAAAATCAAG
ACATGTGATTGGCTGAGAAGCACGTGCTCCATCAACCAATACCTGGTTTT
TCCGCTGTCACGTGGTATACGAGAAATCAACGTGGCCGATAATCAACAAC
CATTGTTTGTGGGAGAGGATTCAAGACTTCCGAGAGTTAAAATTACAGgC
GACAAGAAAGAAGCAAAATACAGATGGTCAACATCAAACAAACCCTTACG
AAAATTCAATTCCAATCCAAGTGCTATCATCAGATTCAAGACACCAGGCT
ATAAATTGATGACAATCCAGgctaaaaatccttttactaatGCTATAGAG
AAAAAGATTTGGCTGGATGTAGGTGCAGAGACTGAAACTGTGGACATCAA
CTGCCCACCATTGACGTTGTTTGCAGATGTTGTTTGTCACGTGATCATAC
CACGTGGTACGCACGTGTCAN
Run BLAST on NCBI

transcript from alignment at scaffold_419:334551..340931-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064572 ID=TCONS_00064572|Name=TCONS_00064572|organism=Clytia hemisphaerica|type=transcript|length=6381bp|location=Sequence derived from alignment at scaffold_419:334551..340931- (Clytia hemisphaerica)
ATGAGTTTGACATGTTATTTATTGAACGATGTTTGGATTAATGATGGCTT
GACTTATCTTTTTTCTTCGGATTTATTTTTCATGAAGTTTTCATGCAGCG
ATGAAAAAGGTATTTTTTTCTTAAATCAATATTTTCCAATAAGATTTTGC
ATTTGAATTCAACGGTTTAACTAATCTAATGGCGTTTTCATATCTTTTTA
TCTTCTAAATAACTGACTATGAATTGTAACACCTGGGTCAGTAGAACGAC
ACGGTTTCTCATTTTTAAGCACGTCGTTCGGAACCATTCTTTTAAAATTA
AGCGCCCGTTTTCTGACAGATCTTACTAGATAGGAAATATATTAAGTTCG
ACAAAATTCCCTTTAGAGCCGGTTTGTTTGGTTCAATTAATGTGGTCTTG
GTCAAAAAGCTNATTAAGTTCGACAAAATTCCCTTTAGAGCCGATTTGTT
TGGTTCAATTAATGTGGTCTTGGTCAAAAAGCTAAATTTTGAAAGAAAGT
CCGGATAAAATTTCACAAAATTTCCAATAATTTCAAGGCTTGTCACCGGT
TTTGTTTTACCACATTCCAAATTTTCAGAAACCGCCTTACCTCAAACCTA
GTACTAGACCAGCGTCCGAGATTCTAAAAAAGCCATAAAGCAGGTTTTTG
TAGAGCACCCCTTAGATCAGGGCAAATTTTAGATATCGGGTAACTAATGC
ATGTCCCAAATTATTTAAAATCTACTTTTCGTTTTCGCCCCCAACTCCAG
CCCTTAAACCATAACAAATTATACATTTTTGGTAGCGTATTTGGATATAG
AATGTTGGATTTGGTGTTACTTAATTTTTTTCTCAGCATAATCAGAGTTT
TTTTTAAGAAAACCTAATTATTCATGACGTCGTAATTTAGAAAAGTTGAA
TATCTCAAGAACTAATGCTCGAAACGTTCACGGCAAAAAAGAGTAGCTAA
AATAGGTATTTTCAATTACGGTTAGCTCGGTTGATCCTAGGTTTTCTTGA
GTTTAACGAGGTAAGATTATCCAGAGTTTCCCTAAGAGTGGAAAACCTAG
GACAACTGTGTTCTTTATGAATCTTTATGTAGCCTTGGAAATTTTTCGTT
TCGCATCAATATTTATCGTTGATCAATATTAGCCAGAGAAAAAAATTTAT
TCCCTTGTCCACCAGGCTAAATCGACCATACTGGAAATCGTCATACTAGC
AATAACTATTCTGTTGTTACCCTGGATAATCGTAGGATAAACGCGCCAGT
GAACGTTGTAATAACTTGAGTATACGTTGTTTAGATGATTTATGCTGAGT
TTAAAGAAAAGTACTGCTTAAATATGAAAACCACGTCTAAACTGACTTAA
AGTACACGAGGTTAAACCGGGTTCCCTTATTAATGTTATCTCAGTTTTCC
GGTTATAACCGCGTGCTAGTAAACAACTACGTTAAACTTTGCTTAACGAT
AACTCGTTATAACCCCGATAGAAAGGGGTGGGCAGCTAACGGATAACTAC
GGATGAAGTTCGACCGATAATAGGAAAACTCAGGGGTTCGTATTCTATTG
TTAAACGGACTTAGTTTAAACTTAGCTATCCGCCTATTAAAATCTACGTA
TACCAATGGTTAAGTTAATAGGATGCGGATACCTATCATTTTTTGCCGTG
GTTATGAAATTTGGACCAATGATAGAACTCATCAAGAGGAGGAGAAATGT
TGTTGAAAAAAATTGAAAATTAGCTGATGTCAGCATTTTATTGCAAAAAT
TCTAATTTCTGTAATTTCTGCTGACGTCATCAATCAACTTTTTTTGAATC
ATCTCAATGTGCTCTATCACTGGTCCAAATTTTATAAAGTTTTGATTTAT
ATTTCTTGAGATATTAAACTTTTTGTATTTATGACGTAATCAATTATGAC
GTCATAAGCAGGTTTTCTTAAAATATCAGAAATTAGAATTTTTGCAATAA
ATATAAAATTTGTTATGGTTTATGAACTGGTATTGGAGGCGAAAAATTAA
TGCAATTTTGGGACATGCATTAAGTTACCCAAGATATTATGTTCCTAATA
GGGTGCAGAATTGAGAAAAAAATTTGCCCTTTGAATCTCCTGCAGTTTTC
GAGTGAATCGATTTTTAGTTCATCGATAGAACTCATCTTTACTAAGGATT
TTTCAAGGTCTGAAAATAAAATATTTGATGCTACCAACGGATCCAGCGTA
CAAATTAGATACTTTAGATGTCTAGATCTCGAGATATTTTGGTTTAAATA
TGGAAAACTGTCGATATTTTTTGCTGAGTCAGCAGTTTTTCAGCATATTT
ACCCACCTTAAAAATGAGTTATGCATTTTTGGACGATGGGTTGACTGAGG
TAATTTGAAGAAAAAAAACAGGAAAGGTTACCGTCGTCTTCAATCGCTCA
GGAACTAGACAAATAAGAAGCTAATTCCATCAAACAAAAAACACATACAT
AAACTCACTAATTCTAAAACAGGAGGTGTTTACGTAACTTAATAATTTCA
ATGTTCTTTGTTATGTCTTTTTCAGATTCACTTTATGACGATAGCGTTTT
TACTCGCTAGTAACCTATTCATCCACCAAGGTCAGTAACTTTTTAATTCC
AAAAACATCCCTGTGTCGAAAAGGTGTCGATGTTTCTTTTGGCGAAAGAT
ACTGTCAACTCTCTCTAATTCGAACTTCTATTATTCGAATCTCTCTGTAA
TCCGATCTAATATATTGGTCCCTTTAGCTGGAAAGTGGTTCAAATCACTT
TCTGTATTTCGAATGAAATTATTGGTCTTTTGAAAATCGAATTAGAGAGA
GTCAACTGTAGAAGCAGTCAAAATAAGATTTAGTCAAGTTTTCTCAGCCT
GCTCGAAAAATCTAGTTAGGTTAGTAAGACTTTGAGTTGGTCTCCGGACC
AGCTTAAAACCAGGTGCTGATGCTTCACCAGCCTTACTCTTTGTTCCGTG
CCATATTACTTACAACTCTTGTTCTTATTACTAATGACAATCAATCAAAC
CAGCTTGCTGCGAACCATTAAGTCTAAAGCTCCTGTAGGGCTAGAGAGGA
ATCTTCAGACTTTCTCAAGCAAGTTTCAAATCTAGCTCAATGGTGCAAAG
CGTCGCTATTTAAGGTTAGATTAACAATGAAAGAACGTTTTGTGTCACCA
GTGATTAGTAATTATTTTCGTAATTTGGTTTATTTTTCTCAGCTCAAGCA
TCAAAGACTTCAAGTCCTTGTCGTTACAAAACAGCTCTCAAAAACTTGAT
TTTTTTTGGGCAGACATCAAAACCTACACGCGATGCGGAAAATGCAAAAC
AATGTGTGGCCTCATGCAACAAAATCAAGACACCGAAATACAAATCTGCT
GTTATTTATGCTCACCAGTGCTTTTGCAGCAAAGCAAGACATATTTTCAA
TTCTGCCTCGTTTACATGTAAAATCAAGACATGTGATTGGCTGAGAAGCA
CGTGCTCCATCAACCAATACCTGGTTTTTCCGCTGTCACGTGGTATACGA
GAAATCAACGTGGCCGATAATCAACAACCATTGTTTGTGGGAGAGGATTC
AAGACTTCCGAGAGTTAAAATTACAGGTACAAAACTGAGGTTATATAGAC
ATCGAAAAACCTAAATTAACCCAGTTGAAAATCTTAACAATATTTGATAG
AATCACTTACAGTATTAGGTTTATTATTGGCTGTATCAAAGCTTGTTACA
AAGGTATTTTTCCCTTTTTTATATATCGCAGGAGCTATTCATATTCTAGA
GAATCTCTCCTTAGGAAATTTACTTTTTCACCAACGTCGAATCGCAAAAA
CACCAAAATGAACCCAAGTAGCTCAAAGCTTAACATAGTATTAGTTTTTT
TTGACAGACTGTACCAAAGCTTGTAACAAGTAAAAATACCTGCACTATTT
TTGTATACATCGAAGGAACTATTCGTATTCTCGAGATAATCTCTCTTTGG
GCTATAAAAGGAAGAAAATAAAGGAAGGGTTGAATTTGAAAAACGGAGGT
TAGCTCTGGGGCGGAGTAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTTTCGCTAAGCGCT
ATATTTTCTTAATGATTGTTTTTCTCCTTATTGCTATCTAAGTTTCATCA
TCAGGTAGGTCCATTCAGCATGTTGCTTGTTTTTCAATATTTAAAGGCGA
CAAGAAAGAAGCAAAATACAGATGGTCAACATCAAACAAACCCTTACGAA
AATTCAATTCCAATCCAAGTGCTATCATCAGATTCAAGACACCAGGCTAT
AAATTGATGACAATCCAGGCTAAAAATCCTTTTACTAATGCTATAGAGAA
AAAGGTTTGTGAGAATGAATTTTTCTGTAAACATTTTTCCCGGGGGGGAG
TACTTAGGCAAATGGAGGGTACGGTATGTGCCGCCCTTAAGGGTACCTTT
TTTGGACTTCCTAAGTCCCGCTAAGGGTCGGAAAAATCAGAAAATCAAAT
TTCAGTCCCACTAAGGGTCGGAAAAATAGGAAAATTTCAACTTTTTACCC
CCTGAAAGATCGAAATTTGGTCAAAATTGGTCGAATTAGTCCCGCTAAGG
GTCGGAGAAATCAGAAAATCAAATTTCAGTCCCACTAAGGGTCGGAAAAA
TAGGAAAATTTCAACTTTTTACCCCCTGAAAGATCGAAATTTGGTCAAAA
TTGGTCGAATTAGTCCCGCTAAGGGTCGTAAAATTCACAAAATTTTCCTT
GGTTTTCTCATCTTTAGTCCCGGTAAGGGTCTAAATTTCGAGCTCGCAAC
CCTAGTACCCCCCCGGGACATTTTTACATCGTTAATTAGAATTTTAGCCT
TTTGAGAAATACTGTAGAGCAGATGAGTATTCAACAATTCAAGGATATCA
AAAGACCATCGTCTCCTACAGATATAGAATTAAATGAAATAAATAGCTCA
ACATCATGATGCGACTTAGTACTGTAAGAAGAGTTCATTACAGATTTGCA
AACTCCTTGACCTGACCCTATCAGCGAGCCGAACTTCTGTCTAAAAAAAT
TGTGAAAAGATAGGCCTGAAGAACCCTTTTATTCTCCTGTTTACAGATTT
GGNCGTTCGTCCGTCCGTCTGTTACCAGCTTTTCTCAGGATTGGCTCATT
AGTTTTTTCTGATTTTTGGCACAATGATGCAAAATAGCAATGCCCAAAAT
GTGACGGAGCCCGATTTTGGAAAAAAAAAANAGGCCTGAAGAACCCTTTT
ATTCTCCTGTTTACAGATTTGGCTGGATGTAGGTGCAGAGACTGAAACTG
TGGACATCAACTGCCCACCATTGACGTTGTTTGCAGATGTTGTTTGTCAC
GTGATCATACCACGTGGTACGCACGTGTCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040496XLOC_040496Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064572-exon-scaffold_419-1575043694:340823..340931TCONS_00064572-exon-scaffold_419-1575043694:340823..340931Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1575043694:338352..338406TCONS_00064572-exon-scaffold_419-1575043694:338352..338406Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1575043694:337356..337739TCONS_00064572-exon-scaffold_419-1575043694:337356..337739Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1575043694:335578..335735TCONS_00064572-exon-scaffold_419-1575043694:335578..335735Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1575043694:334551..334665TCONS_00064572-exon-scaffold_419-1575043694:334551..334665Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1510915933:340823..340931TCONS_00064572-exon-scaffold_419-1510915933:340823..340931Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1510915933:338352..338406TCONS_00064572-exon-scaffold_419-1510915933:338352..338406Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1510915933:337356..337739TCONS_00064572-exon-scaffold_419-1510915933:337356..337739Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1510915933:335578..335735TCONS_00064572-exon-scaffold_419-1510915933:335578..335735Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1510915933:334551..334665TCONS_00064572-exon-scaffold_419-1510915933:334551..334665Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1491911889:340823..340931TCONS_00064572-exon-scaffold_419-1491911889:340823..340931Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1491911889:338352..338406TCONS_00064572-exon-scaffold_419-1491911889:338352..338406Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1491911889:337356..337739TCONS_00064572-exon-scaffold_419-1491911889:337356..337739Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1491911889:335578..335735TCONS_00064572-exon-scaffold_419-1491911889:335578..335735Clytia hemisphaericaexon
TCONS_00064572-exon-scaffold_419-1491911889:334551..334665TCONS_00064572-exon-scaffold_419-1491911889:334551..334665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:334551..340931 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0656368	0	0.078176	0.123551	0	0.0697739	0.0488503	0.060509	0	0.231647	2.4204	2.12807	0.0987521	0	0	0	2.49934	6.72762	0	0.246048	0	0.181286	1.12071	1.04595	0	0	0.0643424	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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