TCONS_00064570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064570
Unique NameTCONS_00064570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064570 ID=TCONS_00064570|Name=TCONS_00064570|organism=Clytia hemisphaerica|type=transcript|length=1370bp
TGGCATAATAAGGGTCGGCACTAAATTAGGACTGATAAGAAAAAGGGCCG
GTAAGGTAACTGCTAAAGATTATCCTAACAATTGTTCATATAATATTCAT
CGAACCAGTCTGTAAGTCGTCCAAGAGATTTAGCTCTTGACATATCTTTA
ATCTCTACTCGTTTAAGTGCGACAAACATCGAAATGAGACTATCACCAAA
GTGCTGTCTGAAAAGAGAGTTCTTCTCCAAAGCTTGTAGGCGATCTTCTA
ATTTTAATGGAATTGTTGTATAAGTAGAAGCGTCAGCATGGCTCACATTA
ACTGAACAAGGCTCTCCAGGATCCAATTTTCTCTCAACTCCGTCAAGACC
TGCAACAATAGTAGCAGCTGTTAGAAGATACGGATTCGCACATGATGAAG
ACATTCGGTTCTCAGCTAATGTTCCTTTGGGTGTTGAGGTCTTGATACGA
AATGCACACGTTCTGTTATCGAATCCCCAGTGATTTGTGAAGATACACCA
AGCTCCTTGTTCGTGGCTAGCATCACAATTCGTGGTCGGTGAAGAGATAG
CTGATAATGCTTTTGAATGATGTCTTAAGCCACCAATCCAATATCGTGCT
AAGTCGGATAGTTTATCATCCTTAGTAACATCACTAAATAAGTTAGTTTG
ACCTGCTAAATCCCATAATGAGAAATTATGGTGGCCTTCCATTGCGACGT
CAGCATTATTTGGTTTAGTCATGAATGTTGCTTGGTAGCCATGTTGCTTA
GCGACATCTTTTACGATCTGCTTGAATCTGTAGGCTTGGTCTGAACCGAT
CATGCCAAAGGTCGATTTGATAGTGATTTCCAGTAAAGCTTGTCGATGTT
CGTGCAGAAATCGTTCAGGTTGTAGCCCcatcaatttcatatttttcata
atgTCAGTAACAATTGCTTCGTACGCTTTATGCGTTTCAACACAATAATC
AAGGTTAAGCGAAACTGTTGGGATTTTACGATCTTTCATTAACTGGAATT
CATACTCAAACGAAGACATGAATCTGTATCCTGCGTTCTGTAGCCTGTCT
AATTGTGTTTGACAGATACTCCTTGAGCAGCAACTATCTAATAAGCTTCC
ATCGTGTTTTTGAAAGTTAGTAATCACGTTGGCTATAGTCGGGTTCCATC
CATTTTTGACGAAAGTGAAAGGATCCGGGACGATTGTACCGTTATTGTAA
ATCACTTTTTTGCCTATATCACCTTCATATTCAAAATGGTCTCCGGTGAA
AGTCAATTGCAGTTGATTGGCAATCATTTCGAAGCCTGATTTCTCATGTT
TTCTGTAATAATCAATATCAGCTAGAAATCCACGTGCGATCCCGTGCAGA
TCGATGCATTCCACATGAAC
Run BLAST on NCBI

transcript from alignment at scaffold_419:310055..311476-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064570 ID=TCONS_00064570|Name=TCONS_00064570|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at scaffold_419:310055..311476- (Clytia hemisphaerica)
TGGCATAATAAGGGTCGGCACTAAATTAGGACTGATAAGAAAAAGGGCCG
GTAAGGTAACTGCTAAAGATTATCCTAACAATTGTTCATATAATATTCAT
CGAACCAGTCTGTAAGTCGTCCAAGAGATTTAGCTCTTGACATATCTTTA
ATCTCTACTCGTTTAAGTGCGACAAACATCGAAATGAGACTATCACCAAA
GTGCTGTCTGAAAAGAGAGTTCTTCTCCAAAGCTTGTAGGCGATCTTCTA
ATTTTAATGGAATTGTTGTATAAGTAGAAGCGTCAGCATGGCTCACATTA
ACTGAACAAGGCTCTCCAGGATCCAATTTTCTCTCAACTCCGTCAAGACC
TGCAACAATAGTAGCAGCTGTTAGAAGATACGGATTCGCACATGATGAAG
ACATTCGGTTCTCAGCTAATGTTCCTTTGGGTGTTGAGGTCTTGATACGA
AATGCACACGTTCTGTTATCGAATCCCCAGTGATTTGTGAAGATACACCA
AGCTCCTTGTTCGTGGCTAGCATCACAATTCGTGGTCGGTGAAGAGATAG
CTGATAATGCTTTTGAATGATGTCTTAAGCCACCAATCCAATATCGTGCT
AAGTCGGATAGTTTATCATCCTTAGTAACATCACTAAATAAGTTAGTTTG
ACCTGCTAAATCCCATAATGAGAAATTATGGTGGCCTTCCATTGCGACGT
CAGCATTATTTGGTTTAGTCATGAATGTTGCTTGGTAGCCATGTTGCTTA
GCGACATCTTTTACGATCTGCTTGAATCTGTAGGCTTGGTCTGAACCGAT
CATGCCAAAGGTCGATTTGATAGTGATTTCCAGTAAAGCTTGTCGATGTT
CGTGCAGAAATCGTTCAGGTTGTAGACCCATTNAGTAAAGCTTGTCGATG
TTCGTGCAGAAATCGTTCAGGTTGTAGCCCCATCAATTTCATATTTTTCA
TAATGTCAGTAACAATTGCTTCGTACGCTTTATGCGTTTCAACACAATAA
TCAAGGTTAAGCGAAACTGTTGGGATTTTACGATCTTTCATTAACTGGAA
TTCATACTCAAACGAAGACATGAATCTGTATCCTGCGTTCTGTAGCCTGT
CTAATTGTGTTTGACAGATACTCCTTGAGCAGCAACTATCTAATAAGCTT
CCATCGTGTTTTTGAAAGTTAGTAATCACGTTGGCTATAGTCGGGTTCCA
TCCATTTTTGACGAAAGTGAAAGGATCCGGGACGATTGTACCGTTATTGT
AAATCACTTTTTTGCCTATATCACCTTCATATTCAAAATGGTCTCCGGTG
AAAGTCAATTGCAGTTGATTGGCAATCATTTCGAAGCCTGATTTCTCATG
TTTTCTGTAATAATCAATATCAGCTAGAAATCCACGTGCGATCCCGTGCA
GATCGATGCATTCCACATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040494XLOC_040494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064570-exon-scaffold_419-1575043694:310609..311476TCONS_00064570-exon-scaffold_419-1575043694:310609..311476Clytia hemisphaericaexon
TCONS_00064570-exon-scaffold_419-1575043694:310055..310556TCONS_00064570-exon-scaffold_419-1575043694:310055..310556Clytia hemisphaericaexon
TCONS_00064570-exon-scaffold_419-1510915933:310609..311476TCONS_00064570-exon-scaffold_419-1510915933:310609..311476Clytia hemisphaericaexon
TCONS_00064570-exon-scaffold_419-1510915933:310055..310556TCONS_00064570-exon-scaffold_419-1510915933:310055..310556Clytia hemisphaericaexon
TCONS_00064570-exon-scaffold_419-1491911889:310609..311476TCONS_00064570-exon-scaffold_419-1491911889:310609..311476Clytia hemisphaericaexon
TCONS_00064570-exon-scaffold_419-1491911889:310055..310556TCONS_00064570-exon-scaffold_419-1491911889:310055..310556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_419supercontigscaffold_419:310055..311476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0916738	0.178793	0.415191	0.10155	0.247254	0.195384	4.91088	5.66413	14.1886	7.39993	11.8264	5.90191	3.65816	11.1649	0.364388	0.130348	0.458794	2.98608	2.53373	0.849797	0.768173	0.475566	0.490519	0.382246	2.52627	7.55449	0.0838019	0.536614	0.98359	0.829343
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008146Gln_synth_cat_dom
IPR014746Gln_synth/guanido_kin_cat_dom
IPR008147Gln_synt_b-grasp
Vocabulary: Molecular Function
TermDefinition
GO:0004356glutamate-ammonia ligase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0006807nitrogen compound metabolic process
GO:0006542glutamine biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006542 glutamine biosynthetic process
biological_process GO:0006807 nitrogen compound metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004356 glutamate-ammonia ligase activity
Blast
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BLAST of TCONS_00064570 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.117e-49
Identity = 123/435 (28.28%), Postives = 211/435 (48.51%), Query Frame = -1 
Query:  102 VHVECIDLHGIARGFLADIDYYRKHEKSGFEMIANQLQLTFTGDHFEYEGDIGKKVIYNNGTIVPDPFTFVKNGWNPTIANVITN-FQKHDGSLLDSCCSRSICQTQLDRLQNAGYRFMSSFEYEF------QLMKDRKIPTVSLNLDYCVETHKAYEAIVTDIMKNMKLMGLQPERFLHEHRQALLEITIKSTFGMIGSDQAYRFKQIVKDVAKQHGYQATFMTKPNNADVAMEGHHNFSLWDLAGQTNLFSDVTKDDKLSDLARYWIGGLRHHSKALSAISSPTTNCDASHEQGAWCI---FTNHWGFDNRTCAFRIKTSTPKGTLAENRMSSSCANPYLLTAATIVAGLDGV--ERKLDPGEPCSVNVSHADASTYTTIPLKLEDRLQALEKNSLFRQHFGDSLISMFVALKRVEIKDMSRAKSLGRLTDWF 1370
            V  E  DLHG++R       ++++    G  M    L++       E   +I      ++  ++P+  TF    W    A VI + F      LL S   R I + QL  LQ +G+  +S+F Y+F      +++  + I   +L     +  H   +  + +++  +   G   E F    R   +EI+    FG+  +D A+  +  VK+VA+++ Y A+F  +    D  +  H   SLWD+  + N+F   +  ++L+   + W+ GL  HS ALS + +P+ +C   + +    +       WG+++ +C F IK    KGT  EN++ S+ ANPYL+ AAT+ AGLDG+    ++  G   S +    + S    IPLKLED L ALE++   RQ  G++ I  FVA+K+ E+++   A    +  ++F
Sbjct:   88 VRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEM-NNIRATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS--PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTF---LNNHD--QPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCDSGILSH---SLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTDFYQVEPS---EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEEIAAERNKFLEYF 508
The following BLAST results are available for this feature:
BLAST of TCONS_00064570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LGSN2.117e-4928.28Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1[more]
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