TCONS_00064552 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064552
Unique Name	TCONS_00064552
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	517

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_419:207..6123-

transcript sequence

>TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=517bp
aaaatttctgacattaaGGTAATaaggtaataataataataatacattAT
CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA
CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT
GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC
TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA
GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC
CATGGACAGCAAAAAATATACCCTTGGACAAAtggtatttaccccctgga
caaatgATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC
GAGTCATGAACCCCCTGGacattatatcctccaccccccatgtacggact
ttttctggaagagccca

Run BLAST on NCBI

transcript from alignment at scaffold_419:207..6123-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064552 ID=TCONS_00064552|Name=TCONS_00064552|organism=Clytia hemisphaerica|type=transcript|length=5917bp|location=Sequence derived from alignment at scaffold_419:207..6123- (Clytia hemisphaerica)
AAAATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATACATTAT
CAATATTATCAATACCCATGGACAAAACATCATGATTTCTCCCCCATGGA
CAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACCGACCCAT
GGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACATATGTTC
TCTTCCCCATGGACAACATGTCCTCACGGTTCTTCCCATGGAAAACAGCA
GGGGATGGAAAACAGGAAAACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAAGGTCTCCAGGTCACCCCATGGACAACCATGTCCTCATGTTCTCCC
CATGGACATATCACGTATCACCCACCACCCTAGGACAAATTAGTCTAATT
CAACCCATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCC
CTGGACNNNNNNNNNNNNNTTTCTACCCCATGGACAAAGCGAGTCATGAA
CCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACTTTTTCTGGAA
GAGCCCATTCTTGCACTTTCATTTTTAAATGGTATGTGTCTGATTCATAC
ATTGAACAGCTTGAGCATGGAGTGGTAGGAGGGGAAGCAGATCTGGAACA
AAAATATACTTAGATAATTAGAAAATATGGACTGAAACAAAATCTATATT
AGCCCACAGTTAAGAATTTCACAAGCAAGGAAGAAGATAAAGTGTCAATG
TCAAAGCAGCCTTGAGATCGGTATAGAGAATCATTCGAATTAGAGAGAGC
GATCAATAAAGAAAATCATTCGAATGAGAGAGAGAGAGAGAGTGATCGTT
ATTGTGATCTCAGGTTGGAAAATCTTAGCACTGAAAAAGTTAGAGAAAAG
CCGTTTTAACCAATATTTCCTTTAACAGGAGGAAAACATGAAACAAAAGT
GACGAGTGTGAAAAGAGCTTAAACCAACAATGTTTGAAGAGACTGAGAGA
GAAAAAAGAAAAAGTATTAGACGATCATGTTTATTTAACGCATCAATAGC
TCTATTTATTTGATTTGATCACGCTATGAATATTATAGTGGTTTCCACAT
TCCAAGACGTTTCCGCATAGCGATATTAACAGCCCCTATATCATCACCTT
TTTTTTACAAGCAACCCAAATTTTGGAAATGATGGAGTGTGCTTTTTTTT
TCTTGCAAATGTTTTATTTACTCGCATGTGGAGAAAAATGCTATTATATC
ACTCTTCAAAATTGTGTTTGTTTAGCATACTTTCTGGACATTACAGATCA
AACAGATCAAATAAATAGTATTATGCATACTAAAGTTTGTTTGTCTAAGA
GGTTTTCTGAATGTTTAAAAGATCAAATACATAGTCTTATCCATATTAAA
TTAGTGGAGAAAAAGTTTGTTTGTCTAGTAGGCTTTCTGGGCGTTGAAGA
TCAAATAAATAGTGTTTTGCATATTAAATGAGTTTATTAATAGAATGAAA
ATGCAGTTGATTCTTAGATAAAAAATATCACAAAGTAAACACAACTAACA
AACTCACGCCATCAGCTTTTTGTAATTAATGAGGGTGTGGTATGAATAGT
AACACATGTCCAGTGAAAGAGAGAAAGAACATATAGAGAAAGATGTGGGG
CAAGATACTTTCTTTAACACTAAAGCCTTGTGTCCACTCCGGATAGTTTT
CAACGGATCGGTTTGGATCGGAATATTTTGGAAAACCGAACCGGACAGTT
TTGCAATATCCACTTCAAATTTTCTGAACCAGATTCTTTCTGTTTACAAT
ATTTATACAATGAACATTTAATTAGTTTAATCTTCTACAGATGTTCTATT
GTCTAAAATCAATAGAACCGTTTCGATCCGGCACGGATCACAAAAAAAGT
TGAAAAAATCCAACTTTTTTTCTATCCGTTTGGACCAAAAACACGTGAAC
ATTCGAACCGTTCACGTGAAACAAATATGAAGCAAATGGGTTGAAGATAA
TCCCCAGAACAATAGAAAGCGTTCCGAACCGTACCGATCTGTTGAAAACT
ATCCGGAGTGGACACATGGCTTAGAGAAATGAAATTTTTTCCTCCTAATT
TTCTTGAATTCCTAATTCTTTTGATTCGTGATTTTTTTCATCTGAGCCAA
AACTAACTCGTGAATCACGAGTCGTTAATTCAAACCCTGGTTGAATTAAC
ACTGTTTCCATTGTATTTTTCAGAAAATCCCATCATGTCTTGTAATTTTG
AAGGAAAACGAACACATCATGCCTTTTATTTTAGGAGAATGAACATTACA
TCTCTTATATTTTAATTAGAAAATAAACCAGCTGCGCTGGAAGGTCAGCC
CAATAAGCTTAAAGGGATTATACGGTGTTATATACACCCGACTCGTCTGA
AACTGATGTCAGCAAAATTTTAATAAAAGAGTCCTTTCAAATTTGTAAAT
AAAAGGAAGAAAAAAATCTTGCTCCACATTTTTCTTTATTCATTACAAAA
GATTCTATTTATTTCAATCTGCTGAATCGACATACATTATAACTATGTAA
AAGGTCAATGGCTTTAAAACGATCAGAAGGAAGTACAATCAAGAAACCTA
ATTCGATGTTAAAGCCAAAGAGGTTGAAAAGCTCATTTTGGTTGAACTTC
AGACAAAAAAAAGTTTAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATCCCACTAAA
TACGAAAAAATTTGTGAATGGTCTAACTTGCGAACTTTTCTGGTCGCTAA
AATTTCTGACATTAAGGTAATAAGGTAATAATAATAATAATAATAATAAT
GCGTTATCAATATTATCAATACCCATGGACAAAACATCCTGATTTCTTCC
CCATGGACAAACAAGGACCCTTCTCCAACCCCTGGACAAATGACACGACC
GACCCATGGACATTCTCTCCAACAGTCAGGTCTCCCCCATGGACAACACA
TATGTTCTCTCCCCCATGGACAACATGTCCTCTGCAACATGTCCTCGGGT
CTAAGGTCTCCAGAGGTCTCCCCATGGACAACCATGTCCTCATGTTCTCC
CCATGGACATATCACCCAACACCCCTAGGACAAATTAGTCTAATTCAACC
CATGGACAGCAAAAAATATACCCTTGGACAAATGGTATTTACCCCCTGGA
CAAATGATATCTACCCCTTGGACAATTGTTTTCTACCCCATGGACAAAGC
GAGTCATGAACCCCCTGGACATTATATCCTCCACCCCCCATGTACGGACT
TTTTCTGGAAGAGCCCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040486	XLOC_040486	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00064552-exon-scaffold_419-1575043694:5767..6123	TCONS_00064552-exon-scaffold_419-1575043694:5767..6123	Clytia hemisphaerica	exon
TCONS_00064552-exon-scaffold_419-1575043694:207..366	TCONS_00064552-exon-scaffold_419-1575043694:207..366	Clytia hemisphaerica	exon
TCONS_00064552-exon-scaffold_419-1510915933:5767..6123	TCONS_00064552-exon-scaffold_419-1510915933:5767..6123	Clytia hemisphaerica	exon
TCONS_00064552-exon-scaffold_419-1510915933:207..366	TCONS_00064552-exon-scaffold_419-1510915933:207..366	Clytia hemisphaerica	exon
TCONS_00064552-exon-scaffold_419-1491911889:5767..6123	TCONS_00064552-exon-scaffold_419-1491911889:5767..6123	Clytia hemisphaerica	exon
TCONS_00064552-exon-scaffold_419-1491911889:207..366	TCONS_00064552-exon-scaffold_419-1491911889:207..366	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_419	supercontig	scaffold_419:207..6123 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.627059	0.95178	0.922152	0.287675	0	0.343765	0	0	0.844798	0.255495	0.156773	0.335548	0.594524	0	0	0	0	0.141426	0.175706	0	0.243437	0	0	0.387777	0.598879	0.598152	0	0.192354	0.33368

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00064552 vs. Swiss-Prot (Human)

BLAST of TCONS_00064552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00064552 (transcript) - C. hemisphaerica