TCONS_00064534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064534
Unique NameTCONS_00064534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064534 ID=TCONS_00064534|Name=TCONS_00064534|organism=Clytia hemisphaerica|type=transcript|length=378bp
TAAAGAACCACCGTTACAACCCAAGTGTATTTAAGATGATAGCTCTTTTG
CTCAATCCCAATTTCAATCTCAGGATGAATGCAAAAGGGTACTTGGTGTT
GAGGGGGACATTTCCAAAGATGTATTTGTCTTTAGGTTTGATTTATTTCT
GGAAAAGGGTCGAACGATAACCTTGACTACGAGAACCATTTTGAGTCTTG
CTGCTTCTATTTACGACCCTTTAGGAATTTTGACTCCTATCACTGCTAGA
GTGAGGACTATTTTTCAGCTTGTTTACAGTTAAGTGTGGTTGGGACGACA
AGGTTCCACCAGACATAGCTTGTGCTTGGTATGGTTTTTTAGACGCTTTG
GAAAGTGTGaagattgttgaaattgatN
Run BLAST on NCBI

transcript from alignment at scaffold_418:156944..157321

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064534 ID=TCONS_00064534|Name=TCONS_00064534|organism=Clytia hemisphaerica|type=transcript|length=378bp|location=Sequence derived from alignment at scaffold_418:156944..157321 (Clytia hemisphaerica)
NatcaatttcaacaatcttCACACTTTCCAAAGCGTCTAAAAAACCATAC
CAAGCACAAGCTATGTCTGGTGGAACCTTGTCGTCCCAACCACACTTAAC
TGTAAACAAGCTGAAAAATAGTCCTCACTCTAGCAGTGATAGGAGTCAAA
ATTCCTAAAGGGTCGTAAATAGAAGCAGCAAGACTCAAAATGGTTCTCGT
AGTCAAGGTTATCGTTCGACCCTTTTCCAGAAATAAATCAAACCTAAAGA
CAAATACATCTTTGGAAATGTCCCCCTCAACACCAAGTACCCTTTTGCAT
TCATCCTGAGATTGAAATTGGGATTGAGCAAAAGAGCTATCATCTTAAAT
ACACTTGGGTTGTAACGGTGGTTCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040477XLOC_040477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064534-exon-scaffold_418-1491911889:156944..157321TCONS_00064534-exon-scaffold_418-1491911889:156944..157321Clytia hemisphaericaexon
TCONS_00064534-exon-scaffold_418-1510915933:156944..157321TCONS_00064534-exon-scaffold_418-1510915933:156944..157321Clytia hemisphaericaexon
TCONS_00064534-exon-scaffold_418-1575043694:156944..157321TCONS_00064534-exon-scaffold_418-1575043694:156944..157321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:156944..157321 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629782	0	1.51578	1.33644	34.0671	23.7034	1.19302	3.28836	0.45511	1.2005	0	0	0.753889	0.724964	0.63538	0.29478	0.370073	0.580488	1.20641	1.24873	0.40594	0.837693	0	1.13752	0.498369	0.546654	0.287852	0	0.307357	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top