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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064527 ID=TCONS_00064527|Name=TCONS_00064527|organism=Clytia hemisphaerica|type=transcript|length=1057bp
tgTCCATTCGGGCGACAAGAGTAAATGGCACAATACAAACAAAAGTAGCA
ATAAAAATCGTTTAACTAAAGATTTACAAAGAACACCAATTCAGTAGCAA
AATTTACAACCTTTTGCCTTGGTGGCTTTCAAGTTTCCTTCAGAAAGTCC
TCTCTGCGTGACTTTTGGTACCGATAGTTTATCATAAGAAAATTTTGTGT
CAAACCCTTTTAAACACGAGGTGAGATAATGCATGTAAATGTTACCATTT
TGTTTTCGTTGAGTTTTAGTCTTCTTACAATAAAATTGCCTTTCGCCATA
AGTCTTGACAACTGCCAATTCGCTTGTATATCGTTTTTCACAATACCCAC
ACATGCTGACCTGTTTTGGGCAAGATTGATGATCACTACGTAACACTAGG
GTCCAGTCATTTGGCCGATCGATATCTGGATCAAGTAGTTCCTGATCAGC
AAAAGGATCTACCGATTTTTCACTTGCAACTTCCCACGAAGAATTTTGCT
TTTTCAGTTTCAATGGAATCGTTGGCACTGTTTTCGCATTAAGGTTGGTG
TTTTCAGCAAAAAGTTCGGGTTCCTTTGTGCgccttttgttgtttttgcg
TGGCTTCTTCCCAGCCATATCAGGTTTCTTCCATTTGTCTTCCGGCTCTT
CCGTGCTTTTATCCCCATCACCAGCGACTCTGTATTTGAGAAAGTTCTGT
AGCTTCTTCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtagcaaattata
aaaatttacaaCCTTTTGCCTTGGTGGCTTTCAAGTTTCCTTCAGAAAGT
CCTCGCTGCGTGACTTTTGGTACCAATAGTTTATCATAagaaaattttgg
gtcaaaccCTTTTAAACACGAGGTGagataatgggctcttccagaaaaaa
ttcgttcatggggggtggaggatatattatttttttcatgaattacccct
ggacattttgattttaaccccctggacacgggttatacccctggaaaaac
atcaaat Run BLAST on NCBI protein sequence of TCONS_00064527-protein >TCONS_00064527-protein ID=TCONS_00064527-protein|Name=TCONS_00064527-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MAGKKPRKNNKRRTKEPELFAENTNLNAKTVPTIPLKLKKQNSSWEVASE
KSVDPFADQELLDPDIDRPNDWTLVLRSDHQSCPKQVSMCGYCEKRYTSE
LAVVKTYGERQFYCKKTKTQRKQNGNIYMHYLTSCLKGFDTKFSYDKLSV
PKVTQRGLSEGNLKATKAKGCKFCY Run BLAST on NCBI transcript from alignment at scaffold_418:49796..50852 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064527 ID=TCONS_00064527|Name=TCONS_00064527|organism=Clytia hemisphaerica|type=transcript|length=1057bp|location=Sequence derived from alignment at scaffold_418:49796..50852 (Clytia hemisphaerica)
atttgatgtttttccaggggtataacccgtgtccagggggttaaaatcaa
aatgtccaggggtaattcatgaaaaaaataatatatcctccaccccccat
gaacgaattttttctggaagagcccattatctCACCTCGTGTTTAAAAGg
gtttgacccaaaattttctTATGATAAACTATTGGTACCAAAAGTCACGC
AGCGAGGACTTTCTGAAGGAAACTTGAAAGCCACCAAGGCAAAAGGttgt
aaatttttataatttgctaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGA
AGAAGCTACAGAACTTTCTCAAATACAGAGTCGCTGGTGATGGGGATAAA
AGCACGGAAGAGCCGGAAGACAAATGGAAGAAACCTGATATGGCTGGGAA
GAAGCCAcgcaaaaacaacaaaaggcGCACAAAGGAACCCGAACTTTTTG
CTGAAAACACCAACCTTAATGCGAAAACAGTGCCAACGATTCCATTGAAA
CTGAAAAAGCAAAATTCTTCGTGGGAAGTTGCAAGTGAAAAATCGGTAGA
TCCTTTTGCTGATCAGGAACTACTTGATCCAGATATCGATCGGCCAAATG
ACTGGACCCTAGTGTTACGTAGTGATCATCAATCTTGCCCAAAACAGGTC
AGCATGTGTGGGTATTGTGAAAAACGATATACAAGCGAATTGGCAGTTGT
CAAGACTTATGGCGAAAGGCAATTTTATTGTAAGAAGACTAAAACTCAAC
GAAAACAAAATGGTAACATTTACATGCATTATCTCACCTCGTGTTTAAAA
GGGTTTGACACAAAATTTTCTTATGATAAACTATCGGTACCAAAAGTCAC
GCAGAGAGGACTTTCTGAAGGAAACTTGAAAGCCACCAAGGCAAAAGGTT
GTAAATTTTGCTACTGAATTGGTGTTCTTTGTAAATCTTTAGTTAAACGA
TTTTTATTGCTACTTTTGTTTGTATTGTGCCATTTACTCTTGTCGCCCGA
ATGGAca Coding sequence (CDS) from alignment at scaffold_418:49796..50852 >TCONS_00064527 ID=TCONS_00064527|Name=TCONS_00064527|organism=Clytia hemisphaerica|type=CDS|length=528bp|location=Sequence derived from alignment at scaffold_418:49796..50852 (Clytia hemisphaerica)
ATGGCTGGGAAGAAGCCAcgcaaaaacaacaaaaggcGCACAAAGGAACC
CGAACTTTTTGCTGAAAACACCAACCTTAATGCGAAAACAGTGCCAACGA
TTCCATTGAAACTGAAAAAGCAAAATTCTTCGTGGGAAGTTGCAAGTGAA
AAATCGGTAGATCCTTTTGCTGATCAGGAACTACTTGATCCAGATATCGA
TCGGCCAAATGACTGGACCCTAGTGTTACGTAGTGATCATCAATCTTGCC
CAAAACAGGTCAGCATGTGTGGGTATTGTGAAAAACGATATACAAGCGAA
TTGGCAGTTGTCAAGACTTATGGCGAAAGGCAATTTTATTGTAAGAAGAC
TAAAACTCAACGAAAACAAAATGGTAACATTTACATGCATTATCTCACCT
CGTGTTTAAAAGGGTTTGACACAAAATTTTCTTATGATAAACTATCGGTA
CCAAAAGTCACGCAGAGAGGACTTTCTGAAGGAAACTTGAAAGCCACCAA
GGCAAAAGGTTGTAAATTTTGCTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064527-exon-scaffold_418-1491911889:49796..50852 | TCONS_00064527-exon-scaffold_418-1491911889:49796..50852 | Clytia hemisphaerica | exon |
| TCONS_00064527-exon-scaffold_418-1510915933:49796..50852 | TCONS_00064527-exon-scaffold_418-1510915933:49796..50852 | Clytia hemisphaerica | exon |
| TCONS_00064527-exon-scaffold_418-1575043694:49796..50852 | TCONS_00064527-exon-scaffold_418-1575043694:49796..50852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:49796..50852 . |
Blast
The following BLAST results are available for this feature:
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