TCONS_00064514 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064514
Unique NameTCONS_00064514
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length504

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064514 ID=TCONS_00064514|Name=TCONS_00064514|organism=Clytia hemisphaerica|type=transcript|length=504bp
GGACATTTCGGATTTATCGGGTTTTAGTTGCAGagatctcaaaaaaaatt
taaaaagttgtggaagttttcaaaaaatctggGATTAAAACTTGTAAAAC
TCAGAGAAGAAGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCC
AATGAAGAAAAGAAAGAACCAACAATGCGAGTTGGAGATGAATTTCAAGC
TGAGGTACCTGACGTCTTACATGATTCCTCATTGGATAAAGATCATCGTC
CTGAACCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAA
AtggaTGAATATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGA
GCAGGCTTTAGGACTGCTTTATTGGCATAAATATGACATTGACAAAACAT
CTGAAGACTTGAGAAATTTCACACCATTACCTGATGCATGGAGCATGGAA
GATCAAGTTATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCC
TCGN
Run BLAST on NCBI

protein sequence of TCONS_00064514-protein

>TCONS_00064514-protein ID=TCONS_00064514-protein|Name=TCONS_00064514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MFNMVKSTDSNEEKKEPTMRVGDEFQAEVPDVLHDSSLDKDHRPEPLLVW
APCENVSDEKMDEYLRVAKDKHGYNMEQALGLLYWHKYDIDKTSEDLRNF
TPLPDAWSMEDQVIFEQSFSSYGKHFPX
Run BLAST on NCBI

transcript from alignment at scaffold_418:218096..225951-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064514 ID=TCONS_00064514|Name=TCONS_00064514|organism=Clytia hemisphaerica|type=transcript|length=7856bp|location=Sequence derived from alignment at scaffold_418:218096..225951- (Clytia hemisphaerica)
GGACATTTCGGATTTATCGGGTTTTAGTTGCAGAGATCTCAAAAAAAATT
TAAAAAGTTGTGGAAGTTTTCAAAAAATCTGGGATTAAAACTTGTAAAAC
TCAGAGAAGAAGAGACTTCAATGTTCAATATGGTTAAATCAACTGACTCC
AATGAAGAAAAGAAAGGTTTGTTTTACAGCACATTTAAATGTTTTGTATA
AATTTCTATCAGTCTATCTGTCTATGGCAGGACCCTGCCGGTTGTTATAG
CAAACGATATCATACTCCAGGATGCAAGTGAAATTTTTCAATCCGCGGAC
GTAGACGGGGGTTCGGTTATTATCAGTTAGGGTTAGGGTTGGAGCTCAAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCTTTTAGCCTGAGACGTCC
TATCTCATTTACACTGGGTGATGAATACCCCATGCAAATGCTCACCCCGT
TCATTTGCCAGGATGTGCCTGACTGACACACTATAAGTTAGCCTGGGAAT
CCAAGCGTTAAACTTTTTTCACAGTCTAGTTTATGATATTTTTGCTGCTG
GTTTAACGCTTGGCGCAGGTAACTCGCGTGCAGGGACATTTTTCCCTGCA
ATGCAGGTTCGGCCTGATTAGCCAGCTTTCAGCGTATTACTTNGACAATC
TCTACACCGGACTTAAGGAAGTCGGATGTCCGGTGTCGGAGAAGGATATT
TTTTTCCACCGGACAATCAAAACACCGGACATGACTAGTCCGGCGGCCGG
TGTTTTTTAATTTTTTGTTTCATAAATGTCCGGCGTCCAAAATTCCCTGT
ATGCAACACACCGGACTGACACCGGACTTATCGCGTCCTGTGTAGCGAAA
GGATACTTTTTGCCACCGGACAAATACACCGGACAGTCTGGTGCGTCGTA
GGGATCCTATGTAGGGGCACCGGTAGGGTAGGGAGCTTTCTTAATTTTTA
AAGGTCTGTAAATTACACACACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCAGACTAATCTACCTGCACCAAGCTCTAT
AATTTTAGAACTTTGTGAGGTGAGGTATTTTTTGTTTTTTCTAAAATTAT
GAGCTTGGATTCCCAGGCTAACTATAAGTATTTGTGAACGAGAGCTTTTT
GTTGTGTCTCGTTGGCTCAAGCGGTTAGGTGTTGGGTTTGTAAACCAAGG
GGCCATTCCAGAATTTGTCTGTAACAGGGGGGCGGCGGAAGACACAAGAT
TTCCAAGGGCAAAAGTTTTCACCAAAATTCGAAATTTCCAAGGTGAGAGA
AGAAAAAATGTATGAATTTCCAAGGCAATTGAATTAAAAAAGGCAAAAAA
GAGTGGAATTTCCGATGCATTTTGGAAAAGTACATAGATTTTTATCGGAA
TTTCCGACCACCACTGGAAAAATTATTTCCGAGGCTAGAAAAAAATTTAA
AATGCACGTCGTTCGACGGGGGGTAACAAAAATTTTTTGGAATGGCCCAA
GGTTGCTTGCATTTGGTGGTTCGAGCCGGGGTCGGAGACCTGTTTCAACG
GTACGGGCAAATTTCAGAAAAATACTTAGAAAACAGTTCAGAACAGTTAG
AAACACTTGAGAAAGACAGAAAATCAGAATAGAAGATAGGAAAGTAGAAA
ATAGAGGGAAAATAAGAGACGATGCATCCTGGAGTATGATATCGTTTGCC
AACCGACCCTGCCGACGCACCATACTGTCTGGTGTATTTGTCCGGTGGCA
AAAAGTATCCTTTTTCTACACTTAGACGCAATAAGTCTGGTGTCAGTCCG
GTGTTGCATACAAGGAATTTTGAACGCCGGACATTTATGAAACAAAAAAT
TAAGAAACAGGACGCACCGGACTGGTCATGTCCGGTGTTTTGATTGTCTG
GTGAAAAAAAATATCCTTCTTCGACACCGGACATCTGACTTCCTTAAGTC
CGGTGTAGAGATTGTCCGGTGTTAAAAAAATTCTCATTTTACATCGGACT
TTCGCGTGTACTGTGTTCGTTAAGCCCGGTGCGTCGGCAGGGTCCTTTTA
TGGCATGGCATGGTTGCCAAGTTCCAAAATTCGCAGTGCAGTGTGGAAGC
GATGCAAAGTCCATGCTGAATTGTTATTTGATTAAACTGAGGTGCACGCC
AAAAGAAGTTCCACTTGCGGAACAGCACCCACTGTAAGCCCCCAAACGGG
TCCAGGGCTGAGACCTGGTGGGGGTTCCGTTCAAGGGTAAAGCTTCTGAG
GAATTTGAGCTTGTCTACCTGAAAGTTGCTCAAAATTTGTGGAAAAAGAG
CTTGAATAGCTGGTACTTCTAAGAAAGAAATGTATGAAGCTAAATGGATC
ATGACCCTGAGCAGTAGCGTGGTGGGTCGACTAAAATTCAGGCAAACTGG
GGAGACAAATTTTAGAAGATTTTGGATTTTGGCACCCCCTATCTATCTAT
GAAAAGTAAATATTTTTTTAAAAACAACGCAATCAAAGCGAGCATTTTGG
GTATTTTCTCTCTTATTGGCCGGAAACTGCCATATCTTTAAGGTGTAAAA
GAGCAACGGGGAACCGAAATTAGTAATAAGAGGCGTCTTTTTCCAGACAA
TCTCAATCGAACAGAATCAACGATCGACCAGTCGAACCAAATCGAACGCA
ATCAACCGATTGAAATTTGATTGTCAAACACAATCGAATCTCAATCGAAC
GTCAAAATTGTGGGTAATATTTGATTGGTTCGATTGTTGTTCGACTGATT
CGATTGTCGTTGTTGTCGGGAAACGTTGCCCGGTTCGGGAGCATGTTGTT
GATCGGACCATACTGCTTTCTAATCGTCAAAACAAAGATGGCGGCAAAAA
ATAGACAATCAACTCCAGACGATCTCAATCAAACGCAATTGAACACAATC
GAACGCAATCAAGCATCAATCAAACGCAATCGAATATCAATCGAATCTGA
AAATTGCGGTAATATTCGATTGAGATTCGATTGCGTTTGACAATGGAATT
TCAATCGGTCGATTGCGTTTGATTTGGTTCGACTGGTTCGATCGTCAATT
CCGTCGATTGAGATCATCTGGCTTTTTGCACCCTTTGAAAAATCTCCGCT
GAGGGGCATTTGCCCCCCCCCCCTGCCACCACGCTACTCTACTAACCATG
AGCCATGTTTTAAAAATCCAAAGTGAGTTGCGTTATTAATTCAAATGAGT
TGAACACCTATTTTTTACTCTCTTCGTCGTTATGAAATCGGGCTTTAGAA
TGGCCCTGCTCCTCTCGTTCGTCTTGAAAAGCGCCAATATCTTACTTTAT
ATTTGCTCCTTACGCCAATACTCTAAAAGTAATTACTGCCTCACGCCGAA
TATATTCGGAGTCCTGTGCACTAATTCCAGGCTGGCAAAATTCCAAATGC
AGGATCAGATGTGAGCGAAAAGTGAGAGCAAAATTGAGCTGGTGATTTTA
GGGGGCAGGGCCCCCTGGAAGAAAAGTTTTAATATTGAATTGATGGGGAA
TTGCAAAAACATATCTAATATTTTACTTTTTTTATCATAATCAATGATTT
TCCTCATGTTCTTTGTTGTATTTTGTCTTTTTGCTTGACTGTACTTTGAA
CGTAAGTCTAATGAATTTTTGAAAATGCGGGACACACAGAGGATGCGGGC
GTACAGTGGGATTGAAGGTCTATTTGCATACGTGACCTGCAGGATGCGGA
TCCTGGGTAATATCCTATTACAATTGGATTGCGTTAGATTTAGACTGTAA
CATCATTTGTTTTTAAATTCTATGATTAATATCTATATATTAATAGCAGT
AGTCTGTCTGTCTGTTTTCTGTCACTAAGCAATGTTTTTTTTTGTTCTCG
ATAAGTTTGTTTTAATTGACAGATCAGATAGAGCCTGGTTTAGACTTTAT
TCAGCCTTTGTTTTGAAATTTAAGGCCCATCTACATTTAGTGATTTTAAT
TTCTGCCCAGGCTTGCCCACCACTCTTTTCTTTTGTTTTAAAGGTTTTCA
AATGTGATTAACAATCGTATTTATTAATGACATTCAAATTCTTTTCAAAA
CAAAACAAATTCCTTTTATAGAGAAGAACATTTCAAATGTAAATCAAAAC
ATAAAATAAAAAAGTTTGTTGAACAACAACAGCATTCAAAGAGCAATAAA
AAGCATGAGAAAAAAAAGTCCACCTCTTTCTTCATATAAAAACATTTGAG
TCGCCGTTACTGTTAAAAAGTGTGTAAGACATTTTGCATATCTAAATTCG
AAAAGTTAGATATGACAAAGGGTTAAAAAAAGCAATTTTTTATCGTCTTA
TTATTTTTTTTAATCTAATAAAAATATAGAGTTGTTGCACTATTCTTTGT
GGCTTTCTTTCCCGCTTTTTGATTGTAAAAATGTGTACTTAGCTTGAGGC
TAATTAATTTCTACTTTTAATTACAAATCCATCTAAAAGGTTGATACTCA
AAATCAATTATTATTTACAAATTGATTTAAATTAAATTGATAAAACCAAC
GCCACAGATTTTGAAAAAAAATCACTCTCAATGTTCTGATTCTATTTTAC
TCCTTAAAAATTTGTAAAAATTCTCCTTTTAAAAGGTATACATAATGTTT
ATTAGGATGAATTCTTATAATCAATTATTCTCCTTTAGAACCAACAATGC
GAGTTGGAGATGAATTTCAAGCTGAGGTACCTGACGTCTTACATGGTGGG
TTGCTTGCGGCTACTGGCTTTAATTTAAACTTTATTCTGGTTNTGAATTT
CAAGCTGAGGTACCTGACGTCTTACATGGTGGGTTGCTTGCTTACTTTAT
TCTGGTAACATTAAAGGTTTTATGTATCTTAACTGATCTTAATTGTTGCT
CATATCATATCAGCATCATTGGTGGATAAATTCTATTTACTTCTAGTTCA
GCAAACTTCATAAAAATGAATGATTTGTGGTTTGATGAACTTGAAGATCT
TATTTAATATTCATGTTTTTTTGTTCAGATTCCTCATTGGATAAAGATCA
TCGTCCTGAACCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATG
AAAAAAGTAAGAGTACATGAATTGGATTTTTTAATGTTTGTTCTGTTTCG
TTTATTGGAATTCTCTTGTATCTCTTTTTATTCTACTTTGTGTTAACATT
TTTCTTTCATATAATTATATATAAAGATTATGAAAAGGACCAAAAAAATA
TTTCCTGGCCGCCTGTATTGCTTTTTTTTCGTCACCGGTTTTACTGTAGG
GCAGGCCTTATTTCAGACGATTGTGATTATAGATTTTAATGTTATTTTTT
TCAGTGGATGAATATTTACGAGTTGCCAAAGATAAACATGGCTACAATAT
GGAGCAGGTTGGGAGAAAATATTCTTTTGTAAACAGCTTGCAAGAAGTAC
TAATTAGGAATCCTCACAATACACAAAATTGGAATCTTACTTCCACTTAA
AAAGAGACTTTCTTTAAATATGCCAATAAATATGGGCAAGTGAAAACCAA
TATAACACTTTTTATTAGTCGTCGAGACCGTAATTATTTGTTATTTTGAA
TAAGAAGAGACTATGATTATCCATATTTATCTTATTTACAGGCTTTAGGA
CTGCTTTATTGGCATAAATATGACATTGACAAAACATCTGAAGACTTGAG
AAATTTCACACCATTACCTGGTAAGTTGGGTTTGAACTTTCAAACCTGGG
TATCCACTGAAAGAAAGTAAGTCCGTTGCAAGTACCTGTTGACAAAAAAT
AAATCCCGACAACATCCAAACAGATTTTTTTTGCAACAAATAATTCATGA
TAAACTTATTTTTTTCCGTGGACACCCAGCTTAATCATTTTATGAGATTA
AAATATCAATAAAAAGATTTGGCTCAGCCCTATCATGCGCACCTTTCAAG
CCCTACAGCACTGTCAGTTGTGATTGGTTAGGAGTTTACATGGAAAATTA
TTTCAAAATGGGAAATTTTATTGAAAACACAAGCATAGAAGGGCCCCTTC
ACCCAGTGGGGTGAAGTAATGTCACTTTAGTCAAGCTTGTTGGAATACAA
AAAGTAGTGTGCAATCTGTTGTTCTAGAGAAATCCCAGGGGGGGGGCAGT
CAGGCAAATTGACCGATGGGTATGTGCGGCGGTTAAGGGTATGTTTTTCA
AAATATCAGAAATGCCCTGTAAGGGTGGACTTTTGATAAATGCACTGTAT
GGGTGGAAATTTCAGCAAATCTAAGAAAAATTGCAAATTTTTGCTCGAAA
ATCTTGATTTCTTTGCTCAAAAAGAGTTTAAAATTTGAAAAAAATGCACT
GTATAAGAGTATAAATTTCACTGATTTTTTCTGCACTGTAAGGGTGCGAT
TCTAAAAGCCAATTTTTTCGTTGCACATCCCGTCAGTTGGTAAACCCGCT
GCCCCCCCCCCCCCCGGTAGAGAAATAAATTTTTTTAACTTAGTTTGTTT
CATATATAACCCAAAATTTTATTCAATGAAATAAAAACCTAAGTGCCCAA
GTCATTTCTTCACTAAGGGTTTACATACTAGGCATACTAGGAGATTGTTT
GGAGGCCTCAGAAATGTTCTTGTGGCTATCACAGTTTAAAGAGTCTGAAC
TAAAATAAATCAAAGTTAATGTTGTTATCATTTAGATGCATGGAGCATGG
AAGATCAAGTTATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTT
CCTCGN

Coding sequence (CDS) from alignment at scaffold_418:218096..225951-

>TCONS_00064514 ID=TCONS_00064514|Name=TCONS_00064514|organism=Clytia hemisphaerica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_418:218096..225951- (Clytia hemisphaerica)
ATGCATGGAGCATGGAAGATCAAGTTATATTTGAGCAATCCTTTAGTTCC
TATGGAAAACACTTTCCTCGNGCTTTAGGACTGCTTTATTGGCATAAATA
TGACATTGACAAAACATCTGAAGACTTGAGAAATTTCACACCATTACCTG
TGGATGAATATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGGAG
CAGATTCCTCATTGGATAAAGATCATCGTCCTGAACCACTTCTTGTTTGG
GCACCCTGTGAAAATGTATCTGATGAAAAAACTGACGTCTTACATGAACC
AACAATGCGAGTTGGAGATGAATTTCAAGCTGAGGTACATGTTCAATATG
GTTAAATCAACTGACTCCAATGAAGAAAAGAAAGATGCATGGAGCATGGA
AGATCAAGTTATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTC
CTCGNGCTTTAGGACTGCTTTATTGGCATAAATATGACATTGACAAAACA
TCTGAAGACTTGAGAAATTTCACACCATTACCTGTGGATGAATATTTACG
AGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGATTCCTCATTGGA
TAAAGATCATCGTCCTGAACCACTTCTTGTTTGGGCACCCTGTGAAAATG
TATCTGATGAAAAAACTGACGTCTTACATGAACCAACAATGCGAGTTGGA
GATGAATTTCAAGCTGAGGTACATGTTCAATATGGTTAAATCAACTGACT
CCAATGAAGAAAAGAAAGATGCATGGAGCATGGAAGATCAAGTTATATTT
GAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGNGCTTTAGGACT
GCTTTATTGGCATAAATATGACATTGACAAAACATCTGAAGACTTGAGAA
ATTTCACACCATTACCTGTGGATGAATATTTACGAGTTGCCAAAGATAAA
CATGGCTACAATATGGAGCAGATTCCTCATTGGATAAAGATCATCGTCCT
GAACCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAAAC
TGACGTCTTACATGAACCAACAATGCGAGTTGGAGATGAATTTCAAGCTG
AGGTACATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAAAGAA
AGATGCATGGAGCATGGAAGATCAAGTTATATTTGAGCAATCCTTTAGTT
CCTATGGAAAACACTTTCCTCGNGCTTTAGGACTGCTTTATTGGCATAAA
TATGACATTGACAAAACATCTGAAGACTTGAGAAATTTCACACCATTACC
TGTGGATGAATATTTACGAGTTGCCAAAGATAAACATGGCTACAATATGG
AGCAGATTCCTCATTGGATAAAGATCATCGTCCTGAACCACTTCTTGTTT
GGGCACCCTGTGAAAATGTATCTGATGAAAAAACTGACGTCTTACATGAA
CCAACAATGCGAGTTGGAGATGAATTTCAAGCTGAGGTACATGTTCAATA
TGGTTAAATCAACTGACTCCAATGAAGAAAAGAAAGATGCATGGAGCATG
GAAGATCAAGTTATATTTGAGCAATCCTTTAGTTCCTATGGAAAACACTT
TCCTCGNGCTTTAGGACTGCTTTATTGGCATAAATATGACATTGACAAAA
CATCTGAAGACTTGAGAAATTTCACACCATTACCTGTGGATGAATATTTA
CGAGTTGCCAAAGATAAACATGGCTACAATATGGAGCAGATTCCTCATTG
GATAAAGATCATCGTCCTGAACCACTTCTTGTTTGGGCACCCTGTGAAAA
TGTATCTGATGAAAAAACTGACGTCTTACATGAACCAACAATGCGAGTTG
GAGATGAATTTCAAGCTGAGGTACATGTTCAATATGGTTAAATCAACTGA
CTCCAATGAAGAAAAGAAAGATGCATGGAGCATGGAAGATCAAGTTATAT
TTGAGCAATCCTTTAGTTCCTATGGAAAACACTTTCCTCGNGCTTTAGGA
CTGCTTTATTGGCATAAATATGACATTGACAAAACATCTGAAGACTTGAG
AAATTTCACACCATTACCTGTGGATGAATATTTACGAGTTGCCAAAGATA
AACATGGCTACAATATGGAGCAGATTCCTCATTGGATAAAGATCATCGTC
CTGAACCACTTCTTGTTTGGGCACCCTGTGAAAATGTATCTGATGAAAAA
ACTGACGTCTTACATGAACCAACAATGCGAGTTGGAGATGAATTTCAAGC
TGAGGTACATGTTCAATATGGTTAAATCAACTGACTCCAATGAAGAAAAG
AAAGATGCATGGAGCATGGAAGATCAAGTTATATTTGAGCAATCCTTTAG
TTCCTATGGAAAACACTTTCCTCGNGCTTTAGGACTGCTTTATTGGCATA
AATATGACATTGACAAAACATCTGAAGACTTGAGAAATTTCACACCATTA
CCTGTGGATGAATATTTACGAGTTGCCAAAGATAAACATGGCTACAATAT
GGAGCAGATTCCTCATTGGATAAAGATCATCGTCCTGAACCACTTCTTGT
TTGGGCACCCTGTGAAAATGTATCTGATGAAAAAACTGACGTCTTACATG
AACCAACAATGCGAGTTGGAGATGAATTTCAAGCTGAGGTACATGTTCAA
TATGGTTAAATCAACTGACTCCAATGAAGAAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040461XLOC_040461Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064514-exon-scaffold_418-1575043694:225786..225951TCONS_00064514-exon-scaffold_418-1575043694:225786..225951Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:220122..220163TCONS_00064514-exon-scaffold_418-1575043694:220122..220163Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:220024..220038TCONS_00064514-exon-scaffold_418-1575043694:220024..220038Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:219746..219823TCONS_00064514-exon-scaffold_418-1575043694:219746..219823Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:219445..219497TCONS_00064514-exon-scaffold_418-1575043694:219445..219497Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:219132..219210TCONS_00064514-exon-scaffold_418-1575043694:219132..219210Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1575043694:218096..218166TCONS_00064514-exon-scaffold_418-1575043694:218096..218166Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:225786..225951TCONS_00064514-exon-scaffold_418-1510915933:225786..225951Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:220122..220163TCONS_00064514-exon-scaffold_418-1510915933:220122..220163Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:220024..220038TCONS_00064514-exon-scaffold_418-1510915933:220024..220038Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:219746..219823TCONS_00064514-exon-scaffold_418-1510915933:219746..219823Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:219445..219497TCONS_00064514-exon-scaffold_418-1510915933:219445..219497Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:219132..219210TCONS_00064514-exon-scaffold_418-1510915933:219132..219210Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1510915933:218096..218166TCONS_00064514-exon-scaffold_418-1510915933:218096..218166Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:225786..225951TCONS_00064514-exon-scaffold_418-1491911889:225786..225951Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:220122..220163TCONS_00064514-exon-scaffold_418-1491911889:220122..220163Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:220024..220038TCONS_00064514-exon-scaffold_418-1491911889:220024..220038Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:219746..219823TCONS_00064514-exon-scaffold_418-1491911889:219746..219823Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:219445..219497TCONS_00064514-exon-scaffold_418-1491911889:219445..219497Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:219132..219210TCONS_00064514-exon-scaffold_418-1491911889:219132..219210Clytia hemisphaericaexon
TCONS_00064514-exon-scaffold_418-1491911889:218096..218166TCONS_00064514-exon-scaffold_418-1491911889:218096..218166Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064514-proteinTCONS_00064514-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:218096..225951 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.96164	9.36951	5.93306	5.00525	65.6895	48.7048	56.5514	52.7256	35.3473	40.645	32.5756	28.8885	21.4184	19.7899	20.3893	25.0321	30.2765	26.4453	11.2091	13.2154	21.3452	18.9837	33.5422	28.9635	34.6092	27.7847	12.8449	9.91836	21.0045	23.11
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000949ELM2_dom
Blast
[Close]
BLAST of TCONS_00064514 vs. Swiss-Prot (Human)
Match: RCOR1 (REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.520e-37
Identity = 62/114 (54.39%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:  175 MRVGDEFQAEVPDV----LHDSSLDKDHRPEPLLVWAPCENVSDEKMDEYLRVAKDKHGYNMEQALGLLYWHKYDIDKTSEDLRNFTPLPDAWSMEDQVIFEQSFSSYGKHFPR 504
            MRVG ++QA VPD     L   S ++D+    +LVW+P +N+S+ K+DEY+ +AK+KHGYNMEQALG+L+WHK++I+K+  DL NFTP PD W++ED+V+FEQ+FS +GK F R
Sbjct:  105 MRVGPQYQAVVPDFDPAKLARRSQERDNLG--MLVWSPNQNLSEAKLDEYIAIAKEKHGYNMEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKTFHR 216
The following BLAST results are available for this feature:
BLAST of TCONS_00064514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCOR11.520e-3754.39REST corepressor 1 OS=Homo sapiens GN=RCOR1 PE=1 S... [more]
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