TCONS_00064511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064511
Unique NameTCONS_00064511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064511 ID=TCONS_00064511|Name=TCONS_00064511|organism=Clytia hemisphaerica|type=transcript|length=322bp
GCGGTAGTCATGATGTCTGACTACTTAAAAGAATTGACTATAAATGACGG
TAAAAGTGAAATCACGAACAAACTGGACAACACTGTCACTCAAGCACTTT
CCAAAGCTATAAATTTCCCTGAATTTGTTGATTTTGACGAGGAAGATAAA
TCGTTGAATGAATTGATTCAATCTTATGCATGGATACAACCTGATGATCT
CAAGATTCAATTAGATCTACAAGACAAAAACACATTGTCTGGTTTGTCAG
ATGCTGTTCACTCATTGGCTATCATGACAACACGTGACAATAATGCGTTC
GAAATGTTAAAATGTCTCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_418:190357..191314-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064511 ID=TCONS_00064511|Name=TCONS_00064511|organism=Clytia hemisphaerica|type=transcript|length=958bp|location=Sequence derived from alignment at scaffold_418:190357..191314- (Clytia hemisphaerica)
GCGGTAGTCATGATGTCTGACTACTTAAAAGAATTGACTATAAATGACGG
TAAAAGTGAAATCACGAACAAACTGGACAACACTGTCACTCAAGCACTTT
CCAAAGCTATAAATTTCCCTGAATTTGTTGATTTTGACGAGGAAGATAAA
TCGTTGAATGAATTGATTCAATCTTATGCATGGATACAACCTGATGATCT
CAAGATTCAATTAGATCTACAAGTAAGCTTTTTGTTTTTTATCCTTGATG
AAATGGACGAGTTAATCTGTTATTGTTGTCTGATATAATGGAGTTTTTAA
TTGAGTCAGGGGTTTGAAGATTACCTCACCCCTGTCTCGCAGCTCCGGTG
GAACTTCTTTCTACTGTGGGGATGAAAATTTATATCAAAATATCAAGGTG
ATAGAGATTCTATTGTTCCAAGTCAAAAAATCCAGTGGTATGGTTTTGAA
GTGCAAGTTCTTTTCATTTTCAATATCAAATAGGGATGAAAATAAAATCA
ATTTCCCAGTGGGGCTGAAATTGTAATGCATTTTGTCAACCGTGGAAGAA
ATTTTGACCAGTGGGAAGGGGATGCCAGCGGGTGACACATGAGTGTGATT
AACTGAACCAAATGATTTTGGTTCTAACATATACCTAGAAATCTTAAAGT
CTCGCGAAGTTATAGTGGTGTGTTTGGATGGGAATAAGGGTAGGCTCTCC
CAGTGGAGACCTTTAGAGTANATCTTAAAGTCTCGCGAAGTTATAGTGGT
GTGTTTGGATGGGAATAAGGGTAGGCTCTCCCAATGGAGACCTTTAGAGT
AGGCGTCGGGAAAAATACGGTTTCTAAGAAATCTTTTCTCTATTTCTACT
ACTTTCAGGACAAAAACACATTGTCTGGTTTGTCAGATGCTGTTCACTCA
TTGGCTATCATGACAACACGTGACAATAATGCGTTCGAAATGTTAAAATG
TCTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040459XLOC_040459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064511-exon-scaffold_418-1575043694:191093..191314TCONS_00064511-exon-scaffold_418-1575043694:191093..191314Clytia hemisphaericaexon
TCONS_00064511-exon-scaffold_418-1575043694:190357..190456TCONS_00064511-exon-scaffold_418-1575043694:190357..190456Clytia hemisphaericaexon
TCONS_00064511-exon-scaffold_418-1510915933:191093..191314TCONS_00064511-exon-scaffold_418-1510915933:191093..191314Clytia hemisphaericaexon
TCONS_00064511-exon-scaffold_418-1510915933:190357..190456TCONS_00064511-exon-scaffold_418-1510915933:190357..190456Clytia hemisphaericaexon
TCONS_00064511-exon-scaffold_418-1491911889:191093..191314TCONS_00064511-exon-scaffold_418-1491911889:191093..191314Clytia hemisphaericaexon
TCONS_00064511-exon-scaffold_418-1491911889:190357..190456TCONS_00064511-exon-scaffold_418-1491911889:190357..190456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:190357..191314 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.1112	0	0.729576	0	0	0	0	0	3.8342	8.31309e-08	3.84198	1.25911	0	0	2.1637e-05	3.3832	0	0	0.905524	0	3.33638	3.59352	0	3.88766	0	0.481146	0	2.35919	3.91514	4.18658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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