TCONS_00064501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064501
Unique NameTCONS_00064501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064501 ID=TCONS_00064501|Name=TCONS_00064501|organism=Clytia hemisphaerica|type=transcript|length=1341bp
AAAAAAAcgaataaaaagaaaacaataagaACAACAGGAAAAAAAATCAA
GGAAGATGTTATCTGAAGATGAGCAAATGCGCTTGGAATTGCAAAGAATG
CAACGTCATGCTGACGTCATCACCGATGAGTCACTTGAAAGCACACGGCG
CATGGTCCGCTTAGCAGAAGAAACCCAAGACACAGGAATAAAAACACTAG
TAGCTCTTGATGAACAAGGAGAAAAACTGAATAGAGTTGAAGAAAATTTG
GATCAAATCAATGCTGATATGAGAGAAGCAGAGAAAAATTTGACTGGTCT
TGAAAAGTTTTGCGGTTTATGCATTTGTAGTTGTAGAAGGAAAAAAGGCT
TTGAAGATAACGAGCAGTACAGAAAAGCATATTCAAACGATAGCAGCGAT
GACAAAAATCATTCGTTTGGTTCAAGCTCTGATAGAAATGCATCAGGTGC
TCCAAGTAGTGGTTACATCAAAAAAGTGACTGGAGATGCAAGAGAAGACG
AAATGGACGAAAATATTGGTCAAGTTGCAGGGATCGTAGACAACCTTAAA
ATGATGGCAATGGATATGGGAGGTGAACTTGATAAACAGAACACTCAAAT
TGAACGTATAACTGATAAGgCTACATCCAATGAGGTTCGACTTGACCGAG
CCAATGAAAGGGCTGAAAGAATActtcgaaaataatgaaaatctgGCAAT
AAAATACTCCTCAGTAAGATGTATAATTTATTACACTGAAGTATCACCGA
TTCCAAACTTAAAAGCctcgtttcgaattttgaaagcGTGCTTCCTACCA
ATCGTTTATCTTTATACGTTTTTACGCCCATACCGTAAAATCCTGCTTTG
TTTAGGTAtgttttacaattttttgtttttcctgtGTGTCTATGGGTTAA
GTATGTTAAATTTGACTATCCCCTCTTTGGAAGTCCCTGTGAGTGTCAGG
GACGTCTTCtgtcaaatctttttttcttttccttgtttattcttttcagt
ttttgagtaTCGTCATTCGGTATACAATTTAGttttgataaatctttttt
tctgtacttttattttttgttattttttacagattatttttataattttt
ttagcttttgtaTATTCGattattcttcaaatttttaaaataatttttta
aattacaaaGTTTATCAGTCAATTAATGGTATCgttatttcaaaattgtc
aatcattttttaattaattcTGTTTTATACATATATTATACTTcatattt
tgatacaaaaaaataatccCCTATCATTGTGATCGGCAAGTTCAACGACT
TTTGTTGATGTTTACTATGGTTCGAAAATATAGGATAGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_418:112094..117401-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064501 ID=TCONS_00064501|Name=TCONS_00064501|organism=Clytia hemisphaerica|type=transcript|length=5308bp|location=Sequence derived from alignment at scaffold_418:112094..117401- (Clytia hemisphaerica)
AAAAAAACGAATAAAAAGAAAACAATAAGAACAACAGGAAAAAAAATCAA
GGAAGATGTTATCTGAAGATGAGCAAATGCGCTTGGAATTGCAAAGAATG
CAACGTCATGCTGACGTCATCACCGATGAGGTCTAATATAACTCTTTTTT
TCTTGATTTTTGTGATCATAGAAAAATACATTGCTTGGATTTTATGATAA
TACCCAGGACAACTTAGACCAATTTACATTTTTATTTAAAAAGATTTGAA
AGGTTTCATAATTCTAAAGTTTATTAACTTGTAAGTGTTATTAAAAAGCT
TAACTCTTTTGATATATTTTTTCAGTCACTTGAAAGCACACGGCGCATGG
TCCGCTTAGCAGAAGAAGTAAGTATTATTTTTCTTATAATTTGAGTATAC
TCCGTCGAAACTCATACCACAGACATGACTAATCCACGGATCTTAGACTG
GCGAATTCCTAGCAGATGTATTGTAATGCCATTGATATGCCCTTGGCAGT
AAATCAATCTCTACACTCGTGAATCGTAATATTTTATTTAGGTCAAAATA
AGACCCTTGAATACCTAGGCGAAAATAATTATCCAATATTTATGATCTTT
AAGGTTGGGCTTTTTTTAATCATCCTAAAGTATCCAAGGTTTGTTAATCA
GACAAAAATCGAAATCTTTCCTTGCTCAAATTCTTTTTATTCTACTTTAG
ACCCAAGACACAGGAATAAAAACACTAGTAGCTCTTGATGAACAAGGAGA
AAAACTGAATAGAGTTGAAGAAAATTTGGATCAAATCAATGCTGATATGA
GAGAAGCAGAGAAAAATTTGACTGGTCTTGAAAAGTTTTGCGGTTTATGC
ATTTGTAGTTGTAGAAGGTATTACCTCTTAAAATCTCAAGACGGCCTATT
AAGAAATGCTCAAATTTTAGGGGACTAGCGTGTGATTTATGAGATAAATG
TTTTTCCAAATCCTAATCATCCACTCTAGCCAGTCGATAAATTTGTTAGA
TTCCAACCGACTAAGCAGTGCAAAAGAATAATCTGTTGAACCAATCATGT
ACCACTATGAGATTGCTTTCGTTTCCGATGTAATATCCTTATTTAGTTTA
CGATTCACAGTTGTGGAAAGAATGATTTCCTGAGTTCAGGAAAGTTGATC
TTGTGCTTTATATTGACGAATTCCATGTATCTCTAAACAAATCTTTAAAA
ATATAAAAATACAAATTCTAGTCTTGTAATACATTGAATTCTTTTCCGCA
GGAAAAAAGGCTTTGAAGATAACGAGCAGTACAGAAAAGCATATTCAAAC
GATAGCAGCGATGACAAAAATCATTCGTTTGGTTCAAGCTCTGATAGAAA
TGCATCAGGTGCTCCAAGTAGTGGTTACATCAAAAAGTATGTTTTGGGAA
GATCCAAGAGGATGCCTACCTACATTTTTTAAGAAAGAGGCACCTTACCC
ATAGATTTATAAAGCCCGAGGGGCTAGATGTAAAGCTTTTGCTGAAAAGT
GTGGCGTGGTTAGGTAGGAAATCCTACCTAAGTCACGTGACAATACAATA
GAATGTCAGCGATTGACCTATCAGAAGATTCGCGGGTTTTCGAAAACAAT
AGCAACAATATTTTTTTCGATATTCACTTTTTTTTGCCTGCGATGGCTTA
AAGCCCGACATCTAGCCATTCGGGCTTTATAAATCTATGGCCTTACCCCA
AGTAGACTTTATTGGCGTGGTTGACTTTTGAACACGTATTTCAATTCTAG
ACATTTATTTAGTCTCCCTAACAAATCCATTAGCAAAGGGAAGGGCTTGG
AGAGTAATCTAAAACTTAATTACTCCTCTCATTCCCTTACAGAGTGACTG
GAGATGCAAGAGAAGACGAAATGGACGAAAATATTGGGTTTGGATTTTCT
TTTTAAATGATTATTTGATTTTTTCTTGATCCGTAAACTCTTCATAGAAT
ATTCCTATAAATGATGGAGTAATATGTATTATTTAATACACGTGACCTAT
AGCGGTAAACACATCAGGGACTCAGAAGAAAATTCTTTCAAGGTTACAAT
TATACTTAGTCTTATATCAAATTCATTCTTCTCGGATAAGGTCGAAAGAT
TTCTATTCTAGAAAATTAGTTTTTTAAAAAGCAAAGTTTTTTAAAAAACA
AACGAATCTCATTGGGCTGCGTGGGTACATCCCTGATGAAATAGTTTTTA
TCATAGGGGATGCGAATTAGACTCGAAAAGACTTTCGCTTGGCAAATTTT
TTTATCTAGGCAAGTTTTTTTGTGATGTGACGATTTTAATTTTGTCACAA
AAAATTTAATAAGAAAGCAAATTTACCCCCTTGTTAACCATAATATCCTT
TATCGGTGAAGCAACAAAGATGAAGGATGAGGGATGCTGGCAGCCAAAAA
AGTCATGTCTCTAAATTTTCATTTTATTTGAATTTCATAATTATTTTCAG
TCAAGTTGCAGGGATCGTAGACAACCTTAAAATGATGGCAATGGATATGG
GAGGTGAACTTGATAAACAGAACACTCAAATTGAACGTATAACTGATAAG
GTATTGTCTAATAGTTTAACGTTTTTCTCTAACTTTATGCTCAGTCTGTC
ATTGATATAAAACTGTGACATAGAATCAATAGAAGTTGTTATTGTTCGCA
CACATGCTGTTAAAATCGATTTGCTTCCTGGAGATCTCGTAAAAAGGTCT
TTACTTTAACAGTCAAGGCTTTAAAGTTTGTCTCGAGAACCAAAAAGGTA
TAATTATGAAAGAAATCGAATTAAATAGCGGTTTTGCGTTTGTTGAAAAG
ATTTGGCATTTTTTGTCTGATAGACATTGTTTAGCATTTACAATAACAAA
TTCAATGGACCCTGCTCATGATTAAAAAACTTTTGCAAAGAACTTCTTTC
TATCTTAATTATATTTTCCTAGTCAAACAGTGTTATTATCTTTTTTATTT
TTGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTTCGT
CCGTTCGTCCGTTCGTCCGTCCGTTCGTCTTTTACCAACTTTTCTCAGGA
ATGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGGTGG
TAGGCAAAATGCGACGGAGCCCGATTTTCGAAAAAAAAATATTTTGGGCA
AATTTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATCATA
GGTAAAAGATGGCTCAAGCAGATTTTTGCAAAAAAATTTTGTTGGCTCAA
AAGACGCATGTTTATCTATAAGAATCACTATTAATAAGCACACATCAATG
TTCTTAGGCAAATTACTCACTTTTTTTATGAGATAGATGTCTTTTTTGTT
CATGAGGGCTTACTTTTGAAGAACATGTGTGTTTAGACATTTTGGTTACT
TGGCGTGTTTTTATAGAAAAACTGACCAAATTCGATATTTTTTTATAAGC
ACATTATCAATTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTTATG
CTTTTTTGCACAGAGATGCAAAACTATAAACCCTCGAATGTGACGGAGCC
CGATTTTCGAAAAATTATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCT
AAAAAACGGGTTTTTTGGACTTTTTGAAATATTGGATCATTGTTTTTTCT
GCTTTTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGATATCTGTAA
AAAAAGAATTTTTCAGCTCAAAAAGGCATCTTTATCTATAAGAATCACTA
TTAATAAGCATTCAATGTTCTTAGCCAAATTACTCACTTTTTTAATGAGA
AAGATGTTTTTTTGCTCACGAAGTCTTGAATATGAAAGAATACTCTTAGG
TGCCAAATAAACGGGGGGGTTCGAATAAACGGGGGGGTTGGAAAATTTTT
GAAATTTCAATAAACGGGGGGACCTAATTGCCGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTTGGAAAATTTTCGA
AAAATTAACAAGCGGGGGGACCGTTTATTTGGCACCTAAGAGTATTTCAA
GAGCATGAAATTTTGGTTTCGAAACGTTTTTTTTAAGAAACAAACAACTA
ATTTTAATAGGCCGTCACTATTTGTGTTCTGAATGATTGTCTAACGGTCA
TGCTCACGTAGATATCAATTATATATGTGTTAAATGCATAACCAGGTAGG
TCCATAAAAGTATCACTTGTTTTCAATTATTTTTAGGCTACATCCAATGA
GGTTCGACTTGACCGAGCCAATGAAAGGGCTGAAAGAATACTTCGAAAAT
AATGAAAATCTGGCAATAAAATACTCCTCAGTAAGATGTATAATTTATTA
CACTGAAGTATCACCGATTCCAAACTTAAAAGCCTCGTTTCGAATTTTGA
AAGCGTGCTTCCTACCAATCGTTTATCTTTATACGTTTTTACGCCCATAC
CGTAAAATCCTGCTTTGTTTAGGTATGTTTTACAATTTTTTGTTTTTCCT
GTGTGTCTATGGGTTAAGTATGTTAAATTTGACTATCCCCTCTTTGGAAG
TCCCTGTGAGTGTCAGGGACGTCTTCTGTCAAATCTTTTTTTCTTTTCCT
TGTTTATTCTTTTCAGTTTTTGAGTATCGTCATTCGGTATACAATTTAGT
TTTGATAAATCTTTTTTTCTGTACTTTTATTTTTTGTTATTTTTTACAGA
TTATTTTTATAATTTTTTTAGCTTTTGTATATTCGATTATTCTTCAAATT
TTTAAAATAATTTTTTAAATTACAAAGTTTATCAGTCAATTAATGGTATC
GTTATTTCAAAATTGTCAATCATTTTTTAATTAATTCTGTTTTATACATA
TATTATACTTCATATTTTGATACAAAAAAATAATCCCCTATCATTGTGAT
CGGCAAGTTCAACGACTTTTGTTGATGTTTACTATGGTTCGAAAATATAG
GATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040454XLOC_040454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064501-exon-scaffold_418-1575043694:117272..117401TCONS_00064501-exon-scaffold_418-1575043694:117272..117401Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:117035..117076TCONS_00064501-exon-scaffold_418-1575043694:117035..117076Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:116535..116701TCONS_00064501-exon-scaffold_418-1575043694:116535..116701Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:116016..116150TCONS_00064501-exon-scaffold_418-1575043694:116016..116150Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:115515..115559TCONS_00064501-exon-scaffold_418-1575043694:115515..115559Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:114852..114951TCONS_00064501-exon-scaffold_418-1575043694:114852..114951Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1575043694:112094..112815TCONS_00064501-exon-scaffold_418-1575043694:112094..112815Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:117272..117401TCONS_00064501-exon-scaffold_418-1510915933:117272..117401Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:117035..117076TCONS_00064501-exon-scaffold_418-1510915933:117035..117076Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:116535..116701TCONS_00064501-exon-scaffold_418-1510915933:116535..116701Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:116016..116150TCONS_00064501-exon-scaffold_418-1510915933:116016..116150Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:115515..115559TCONS_00064501-exon-scaffold_418-1510915933:115515..115559Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:114852..114951TCONS_00064501-exon-scaffold_418-1510915933:114852..114951Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1510915933:112094..112815TCONS_00064501-exon-scaffold_418-1510915933:112094..112815Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:117272..117401TCONS_00064501-exon-scaffold_418-1491911889:117272..117401Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:117035..117076TCONS_00064501-exon-scaffold_418-1491911889:117035..117076Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:116535..116701TCONS_00064501-exon-scaffold_418-1491911889:116535..116701Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:116016..116150TCONS_00064501-exon-scaffold_418-1491911889:116016..116150Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:115515..115559TCONS_00064501-exon-scaffold_418-1491911889:115515..115559Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:114852..114951TCONS_00064501-exon-scaffold_418-1491911889:114852..114951Clytia hemisphaericaexon
TCONS_00064501-exon-scaffold_418-1491911889:112094..112815TCONS_00064501-exon-scaffold_418-1491911889:112094..112815Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:112094..117401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.921874	1.0449	0.541127	0	3.03316	1.15016	17.5296	18.023	26.3722	16.9996	17.1492	13.0421	13.1525	13.2102	16.3536	13.5247	13.2237	13.0576	13.1198	13.3038	13.7586	12.3639	11.2314	9.21203	4.95491	8.58824	7.87043	10.1085	38.831	33.0128
Blast
[Close]
BLAST of TCONS_00064501 vs. Swiss-Prot (Human)
Match: SNP25 (Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.722e-70
Identity = 113/206 (54.85%), Postives = 150/206 (72.82%), Query Frame = 2 
Query:   59 LSEDEQMRLELQRMQRHADVITDESLESTRRMVRLAEETQDTGIKTLVALDEQGEKLNRVEENLDQINADMREAEKNLTGLEKFCGLCICSCRRKKGFEDNEQYRKAYSNDSSDDKNHSFGSSSDRNASGAPSSGYIKKVTGDAREDEMDENIGQVAGIVDNLKMMAMDMGGELDKQNTQIERITDKATSNEVRLDRANERAERIL 676
            ++ED  MR EL+ MQR AD + DESLESTRRM++L EE++D GI+TLV LDEQGE+L R+EE +DQIN DM+EAEKNLT L KFCGLC+C C + K    ++ Y+KA+ N+             D     A S G+I++VT DARE+EMDEN+ QV+GI+ NL+ MA+DMG E+D QN QI+RI +KA SN+ R+D AN+RA ++L
Sbjct:    1 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIEEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLKS---SDAYKKAWGNNQDGVVASQPARVVDEREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 203
The following BLAST results are available for this feature:
BLAST of TCONS_00064501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNP255.722e-7054.85Synaptosomal-associated protein 25 OS=Homo sapiens... [more]
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