TCONS_00064499 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064499
Unique NameTCONS_00064499
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064499 ID=TCONS_00064499|Name=TCONS_00064499|organism=Clytia hemisphaerica|type=transcript|length=1297bp
AGGTTAATATACAAATTGGTTTGTTGGCACAAGACGGATCATCCAATGTT
ACGCATCAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATTGA
TCTTCTACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAACA
CTGGCTATCGATATGCTTCAACGAGCAACAGTACATAACCCGAGCACCGG
AAAGTTAGAATCAGCTGATTACAGAATAAGTAAAAGCGCTTGGTTGGACG
AGAGTCATGATGGTATTGTTGACATAATGAATCGAAGGATAGAAGCTTAC
ACTGGACTAAGTATGGAAACGGCTGAAAAATTACAGGTTGCAAATTACGG
TATGGGTGGACATTATGAAACTCACTTTGACTTCGGAAGGAGTGTTCCGC
TACGTCCACCGCCCGGAAAGAACCGAACCGATTATACTTACAGAACGCAT
AGAGGAGAAGATTTCAAGAAGGACGGACATCGGATTGCCACCTTCTTAGC
ATATATGTCGAATGTCGAAGCTGGAGGAGCAACAGTATTCACCAATATCG
GACAAGCTGTCCAACCAGCTAAGGGTGATGCAGTGTTTTGGTTCAATCTC
CATCACGATGGCTCTGGTGATTTCGATACAAGACATGCAGCTTGTCCTGT
ACTCATCGGTGAAAAATGGGTTTCAAATCGTTGGATTCATGAACGAGGTC
AAGAATTCCGAAGACGTTGTAATTTACGACCAGAAGACGATTAGTCGGAA
AAACTAAATACTATTTATTACGAACTGCTTTaattacaagttttcaaata
tgGTAACCTGGATGTGTAGGATTGAACAAGACCTGAACATGTAAATTGAA
TATTGGAAATTACAGTGTCgactctttctaattcgatctttaaagCACCa
ataattttcttcgaattagggAAAGATTTCATTATACAAAAGACAGAAAA
TAATTATGATAAATAAATTTGTGAGATTGCTAGGAGTTCTCTTTAAGGTT
ACGAAGGTTACACGAAGAACCGTTACATTGTTTGCCCTGAGATAATTCTC
AAACCGATTATCTCCACGTAGTAGAGTAAAAACTTATGTACTATTAACAA
GTTTcgacaatatttttatttaacttttttatggaTAGGTAGaacctgta
taatttttttttgccgtaaTTTGAGTTCAAAAAGAAATGGCACCATtagt
aaaaatgatttttatatgTTAAATGCGTAGATTATTTagaatgaaattat
ttttgtatcatTGTTGTGAATGAAGAACAAcgttttttagaaaagaa
Run BLAST on NCBI

protein sequence of TCONS_00064499-protein

>TCONS_00064499-protein ID=TCONS_00064499-protein|Name=TCONS_00064499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=247bp
RLIYKLVCWHKTDHPMLRIKPARLERIYPKPELIFYRQAMSDREIERVKT
LAIDMLQRATVHNPSTGKLESADYRISKSAWLDESHDGIVDIMNRRIEAY
TGLSMETAEKLQVANYGMGGHYETHFDFGRSVPLRPPPGKNRTDYTYRTH
RGEDFKKDGHRIATFLAYMSNVEAGGATVFTNIGQAVQPAKGDAVFWFNL
HHDGSGDFDTRHAACPVLIGEKWVSNRWIHERGQEFRRRCNLRPEDD
Run BLAST on NCBI

transcript from alignment at scaffold_418:240982..250392+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064499 ID=TCONS_00064499|Name=TCONS_00064499|organism=Clytia hemisphaerica|type=transcript|length=9411bp|location=Sequence derived from alignment at scaffold_418:240982..250392+ (Clytia hemisphaerica)
AGGTTAATATACAAATTGGTTTGTTGGCACAAGACGGATCATCCAATGTT
ACGCATCAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATTGA
TCTTCTACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAACA
CTGGCTATCGATATGGTAAGGACAGTTCTTTCTTATTTACGTCCTACAGA
ATTATTTTACAGAATGTGTAAGAAACCTAAAGCTCGCTTCAAGGTCGTTT
CAGACCACAAGAACAACATGATGTAATAGTATGTACAATATGTCTTAACA
CGAAGAAACCGAAATAATCATATTGATTGTATCAACGATCTACCAAGCTG
AAGTTCTCGTGCGATACGTGCGGTCTTTTTCCTACAAAACGTGACTCCTT
GATAAGAACTATCCGAGATTCTTAGATACTAGGGCTAAATCTTTTATCAG
AGATGctcgcttagataaacttaGATCTTGATTGGGATTCCGTTTTCAGA
CTCCTGCTTCTTACTTTCGATTTAAGCCttccgcctcccactttcgattt
cagcctcccgcctccgaATTTTCCAGTATACTGGTTAAAGACCTTATAAA
TTGTTATCTGGAAAGCTTGAGTGGAAATAGAAATGGTACACAACATGATT
TTGTGTATACGGAGTTATATTTACATTGAATGTAAAATAATTACAGGAGT
TCTTGgaaggtttttattttttggtttttatttgatgtttttgacGATGT
AGCGAAGAGTTCACCATTGACCGTCATCTTCGGGCAAAGGAGCCTCTTGT
GCTTCCTTGATTAGTTGTTGTGCAAAAGCTAGACGCTCTTTTGATATGCC
AAGGCTTTGTTCATCTTCGCTCTTGTCGTCTGCTTCCTTGATTTTAAATC
CGAAGCTCTTCTTAGCGGATGATTCACACTCACTTTTCAATAATGGTTGA
CCAGCGGTGGCTGGAAGCAAGCCGCGTTGCTTTAATTGTTCGAACTTGGA
GGCAGATACGGTCAATTCCACGCCATTTTGATCCGCAAAAGTGACCATCT
TGGGTGCTAACTTTTCGTTAACTTTATTCCGATGGCTGTTTTTTGGTGAG
TTGGACTCGATATTTGATGGTTGACCAGCTATGGCCGGAAGCAAGCCGCG
TTGCTTTAATTGTTCGAACTTGGAGGCAGATACGGTCAATTCCACGCCAT
TTTGATCCGCAAAAGTGACCATCTTGGGTGCTAACTTTTCGTTAACTTTA
TTCCGATGGCTGTTTTTTGGTGAGTTGGACTCGATATTTGATGGTTGACC
AGCTATGGCCGGAAGCAAGCCGCGTTGCTTTAATTGTTCGAACTTGGAGG
CAGATACGGTCAATTCCACGCCATTTCGATCCGCAAAAGTGACCATCTTG
GGTGCTAACTTTTCGTTAACTTTATTCCGATGGCTGTTTTTTGGTGAGTT
GGACTCGATATTTGATGGTTGACCAGCTATGGCCGGAAGCAAGCCGCACT
CCTTCAATTGCTTGAACTTGGAGGCAGAGACGGTCAATTCCACGCCATTT
CGATCTGCAAAGGTGACCATCTTGGGTGCTAACTTTTCGTTAACTTTATT
CCGATGGCTGTTTTTTGGTGAGCTTGACTCGATTTTTGACGGTTGACCTG
CGTTCGGTGGAAGCAAGCCGCACTCCTTCAATTGCTTGAACTTGGAGGCA
GAGACGGTCAATTCCACGCCATTTCGATCCGCAAAAGTAACCATCTTGGT
tgcttatttttcacttttcacttTATTACAATAACTGACAGTTTTAACAA
ATTCAGGATGAGAATTACTTCTGCATGCGCTGAGaggtttttttcaaaac
taaagTTGTTTAGAATTATGAAAACTTTTCATATGtgagattttttattt
gacgtcaaatattcaGTTTTATCCTGCGTCACATTACGTCACGTTTGCAA
CgtaattttcactttcaaattTAAATGGACAAAAGAACAAGTGATATTCC
TGAGAAGGATATTGTTTGATATCCTCGACCATTCAAAATTTTGTGGTAGC
CTAGAGGCCTCAAAAATTGTTGATATAGGCCTACTTTGTTATTCCTACTC
GATAAATTTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTCAATTCCACGCCATTTCGATCCGCAAAAGTGACCAT
CTTGGGTGCTAACTTTTCGTTAACTTTATTCCGATGGCTGTTTTTTGGTG
AGTTGGACTCGATATTCGATGGTTGACCAGCTATGGCCGGAAGCAAGCCG
CACTCCTTCAATTGCTTGAACTTGGAGGCAGAGACGGTCAATTCCACGCC
ATTTCGATCTGCAAAGGTGACCATCTTGGGTGCTAACTTTTCGTTAACTT
TATTCCGATGGCTGTTTTTTGGTGAGCTTGACTCGATTTTTGACGGTTGA
CCTGCGTTCGGTGGAAGCAAGCCGCACTCCTTCAATTGCTTGAACTTGGA
GGCAGAGACGGTCAATTCCACGCCATTTCGATCCGCAAAAGTAACCATCT
TGGTtgcttatttttcacttttcacttTATTACAATAACTGACAGTTTTA
ACAAATTCAGGATGAGAATTACTTCTGCATGCGCTGAGaggtttttttca
aaactaaagTTGTTTAGAATTATGAAAACTTTTCATATGtgagatttttt
atttgacgtcaaatattcaGTTTTATCCTGCGTCACATTACGTCACGTTT
GCAACgtaattttcactttcaaattTAAATGGACAAAAGAACAAGTGATA
TTCCTGAGAAGGATATTGTTTGATATCCTCGACCATTCAAAATTTTGTGG
TAGCCTAGAGGCCTCAAAAATTGTTGATATAGGCCTACTTTGTTATTCCT
GCTCGATAAATTTATTTagctaatctttgttttttttactagCTTCAACG
AGCAACAGTACATAACCCGAGCACCGGAAAGTTAGAATCAGCTGATTACA
GAATAAGTAAAAGgtataaatctttcattttctaTTCATGATGTGTCAAC
cagtattattattattgcaGTGGCGGATCTAATAGGAGTTCAAAAAGAGT
GTTTCTTCTAGCCATACTGCTTATAAGGAAATGAAGACTATACGTCATAG
ATCTCGAACCATCCNAAcagtaattaaatattaaattaaaacgttacaat
atataaattgcttaaaatacgtagagctaggaaattcaaagttaaataaa
aaaaaaattgaaatcacgacacaaacaaaactgaaaactgaatcGAAAAC
TGTTGAACTAGCACAACCTAGCGGGTCATGCCAAACTCAAAAGCATAAAC
AAAAGCAATGGTAAAtacggtgaaaaaattaagtactaaaatctatgaaa
agctNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAGAGCA
TAGGCGTTGAATACCTTTACATCAAAAAATGCTCGTTGTCCACGAACCCA
AAAGCCTCCAGCACTGATGTCAGCTCTCGCGTTGTCAGTCGTGATCGTAC
CTTTGTTTAAACGTTCGCCAGTGATCGGCTCCAATAGGAGTTCAAAGAGA
GTGTTTCTTCTAGCCATACTGCTTATAAGGAAATGAAGACTATACGTCAT
AGATCTCGAACCATCCCTGCAGATCCGCCATTGAATACACggattgcaaa
attatatcagtgcagtcaaaacatgtgattactcgaaaaagtttcgatgt
acttgctttacaacttacagctgataactctattagtgtcaataaattcg
aaccaatcagaaataaatgtcatgtaacaagcacataaaaatgtcgagta
aaagcgtgatttgtcttcagactttagtATTGCAACCTGTGTATAAGCAA
TTTAATTATGCAATTTAAAAGGGCTGTAAGTTCCATTTAGGCTCAACCGA
TTGGTGGAGGTCGATCATCAGGAGAACTTTTTAAAGTTGGTTAAAACCAT
GTGGAACTTTCAGTGTAGTGTTTTTAGAGATGTGAAAAAAGCGAAGTAAG
AGAACTAGGTTTCAGAATTTAATAATAAgcgttttaatttttataagagc
atccaaaatttttaaaatgttcttaactttttgggttttaagcctgaaaa
tctaCTTAAAATGGTTTACCTATTTTCCCAAGAAATTAGCTGTTTTAGAg
cccacgaagccttaaaatgttcttaagttgtttttaacattttgaccatc
gaagccttatatagtttgttcttataaaaaaaacgtgttgttatttttct
taaagCGCTTGGTTGGACGAGAGTCATGATGGTATTGTTGACATAATGAA
TCGAAGGATAGAAGCTTACACTGGACTAAGTATGGAAACGGCTGAAAAAT
TACAGGTCTGTTATTCAATAGTTGTATGCCCTCGTGTGAGTCAGGGCGAg
cttaaactttttaaaatcaCAAATTGAAAATTAGATCATTGGCACCGATT
CCCGGATCCCTGATTTTTAGTTGAcctttgaataagtttggaacaGCTCA
GATGGCAATGGATATATTTACCGATTTATTTTCAGCTCCTTGAAGGACAC
CATTTATCGAATAACTTCTCATTTCGGAAGGGATTGTTTCAGAGGTACTT
CTGAAAAGAACTATCGTAGCCATGCATTGTATTCTAATCTTAACTATCTT
CTTCAGGTTGCAAATTACGGTATGGGTGGACATTATGAAACTCACTTTGA
CTTCGGAAGGGTAAGTTTATAGATTGGGctcttctagaaaaaaattgttc
atGGGGGTTGGAAGATATATTATTTTGTCAAtgatctacccctggacatt
tggatttttcaccccctggacacgcgttttacccctggacacgcgtttta
cccctggacatgcgttttacccctggacattacAAATTCATTCCATGGAC
ATGGCAGTTATTCAGGATTTTTTcgatacccctggacaatataccTTCCA
TCCCCTATGAACGGTTTTTTTCTAGAGGATATCAACGTTTTAAGAAAagt
ttattctaaaatttcaatATCTAGTATGGCCTTTATTGGATTGTTTGAga
taatgataatgataattTTTGACATTTATATTTTTAGAGTGTTCCGCTAC
GTCCACCGCCCGGAAAGAACCGAACCGATTATACTTACGTAagcttttga
cttttttgagtCCTATTTTAGGCTTTTTGACATTCAAATTATTAACAGTC
TTTCATCATTAAAAGTGGACTCatccgaaaaaaaatatatgagGTGTTGA
GAACATTAATTATTACGAACGATTTTAAGATACTTATAGTTTGGCATATT
TAGTGTTGAAAATTGACTCGTTCTTACAACCTGCTTGCTTCAACTTCTGA
ACTGGATACAActtgaaaatattcaatattgtcattttcaatttttacat
atCCATGAGTTTTTGACAATTGACCCCTAGATTATCAACACAGAAATGAT
CTCATTTTTCACCAACCCCCAATGCCCAGCTTTTTCTATCCTTTTACTCT
CCTGATTTTCCAATTTCCCCAACAATCCCTGTTACAATTCTTTTCTTTGA
ATTAAAGGACCCCTAAagttttttattactttctcTCGTATAGAGAACGC
ATAGAGGAGAAGATTTCAAGAAGGACGGACATCGGATTGCCACCTTCTTA
GCATATGTAAGTCTTtgcatttttaagtttttccatGGATGGGTGTATTT
GACTTACAGATACCTTAGGCTATCTCCTTTATACTGTTGGATGAGTGTTT
CTCATCTCAATTACTTGCTTTTTGCCACCCGTTTACCAAAACTAAATATA
AGCAAATTCTTTATGCCAGTGGTGAATCTGAGGGGAGGGGATTCAAAAAT
TATGATAGAGAGCCTTCTTTTTCTCATATAGATGAGTATGGCCAAAAAAA
AACTCTCCGCCATAAATTTTGAACCCCTTTTAGATCCGCCACTGTGTGTT
ATTCTCAACCCAGCTAGCACAccacgttgtttcaacgttcatttaacgtt
atatggacgttgtgaaaattagataaacgttaaaaaaaCGTATTGTGCCG
GCTGGGAAGAATCAACTTTCCCCTAAACATCTTTAGTGAAACAcgttgaa
aatatatttctttcaTTTAGATGTCGAATGTCGAAGCTGGAGGAGCAACA
GTATTCACCAATATCGGACAAGCTGTCCAACCAGCTAAGGTGTCGTTgtg
tttattaaatttcaaagaTATTCTCCATCTTACTGTCCCGTTTGTAATCT
CTGAAGAGGCTCTTGTCTTATTTTTAagtaatagaccttatcggagtttt
tgatttttctaaaaaagcgatgtattgtgggattgtttcgggagtattac
aatagaaatctcttaggaattcctcgagggagttctattgtaatacttcc
GAAACAATTCCAAAATGcttcacttttttagaaaaatcaaaaactccgat
aaggtctattgaataGACGGTGATCTGAAAAAaactaatttaaatttaat
tgaTGATCACAAAATCATCCCAAAGGTTAGAACAAGGGTGTTGATTGAGG
TATATGGTTGAAATCATGTTTCTGAAACAGGGTGAAAATTTCTTGCGGCA
GAATGAACTAAAGGAATGCGATCAAAATATATATGGAGTTGAATATCGCT
TGTCTTGAAATTGGTGGGGATCTGTCAGAACTATAGGATAaaaattcatg
tttttttaACCTCCAAAGACGTTTCGGATTTTTTAGCTTGCGTTCATTAT
TTGTTTGCAGGGTGATGCAGTGTTTTGGTTCAATCTCCATCACGATGGCT
CTGGTGATTTCGATACAAGACATGCAGCTTGTCCTGTACTCATCGGTGAA
AAATGGGGTGAGTAGGTCCTAGGTTTTTTCGTATCCAACAACGAAagggt
tttttttaaatgaagtaTAGAGCTCTGCGAATCAAACTAAGTACAGTGGA
gtctttataactcgaatgtctccttaactcgagcaAGCTTTCTTGTTCCT
TCAtttaacaataccttataaaccaATCTCCATTATTATtagaaatttcc
ataattcgaagAGATTTGTGATCGCCATGCGTGTTGAATAATGGAGACTC
CGGTGTAGATGAGAGTTAGAGTTTAGTTATGTTGAAAACCTTTAAAGTGG
GCAGAATTTAcggccaaaatttttaaaatcataatTAGTAGTCCATTTTT
ATTGTGAAATGAAACATGGATCAATGATCTTATCCTTTATTTCTGAGATT
TATTGTTGTCTGACCGATTAGAGCGCGATCaatcctgattacccatgatt
cattgcCTGTGACTCGTGAAATGACCTATTcataatagtgaggttaagca
agtgtttattgAGACCGTTCAATGCTATAGCGTAGGCatgtacataagat
ttcacttccatggtttgctttggcaagttatgtacaggtggtatcgcact
ttacggtcaaaataaacccgtgcttaacctcgcCAATGATAATTAATGCT
GTCGTTTTGATTGCAAAGGGTTTTTCAATTTATAAAGTAAATACGTTTGA
AGTTGAATTCTATTTTCATGTTCATTGTTTTTAGTTTCAAATCGTTGGAT
TCATGAACGAGGTCAAGAATTCCGAAGACGTTGTAATTTACGACCAGAAG
ACGATTAGTCGGAAAAACTAAATACTATTTATTACGAACTGCTTTaatta
caagttttcaaatatgGTAACCTGGATGTGTAGGATTGAACAAGACCTGA
ACATGTAAATTGAATATTGGAAATTACAGTGTCgactctttctaattcga
tctttaaagCACCaataattttcttcgaattagggAAAGATTTCATTATA
CAAAAGACAGAAAATAATTATGATAAATAAATTTGTGAGATTGCTAGGAG
TTCTCTTTAAGGTTACGAAGGTTACACGAAGAACCGTTACATTGTTTGCC
CTGAGATAATTCTCAAACCGATTATCTCCACGTAGTAGAGTAAAAACTTA
TGTACTATTAACAAGTTTcgacaatatttttatttaacttttttatggaT
AGGTAGaacctgtataatttttttttgccgtaaTTTGAGTTCAAAAAGAA
ATGGCACCATtagtaaaaatgatttttatatgTTAAATGCGTAGATTATT
TagaatgaaattatttttgtatcatTGTTGTGAATGAAGAACAAcgtttt
ttagaaaagaa

Coding sequence (CDS) from alignment at scaffold_418:240982..250392+

>TCONS_00064499 ID=TCONS_00064499|Name=TCONS_00064499|organism=Clytia hemisphaerica|type=CDS|length=6696bp|location=Sequence derived from alignment at scaffold_418:240982..250392+ (Clytia hemisphaerica)
AGGTTAATATACAAATTGGTTTGTTGGCACAAGACGGATCATCCAATGTT
ACGCATCAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATTGA
TCTTCTACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAACA
CTGGCTATCGATATGCTTCAACGAGCAACAGTACATAACCCGAGCACCGG
AAAGTTAGAATCAGCTGATTACAGAATAAGTAAAAGCGCTTGGTTGGACG
AGAGTCATGATGGTATTGTTGACATAATGAATCGAAGGATAGAAGCTTAC
ACTGGACTAAGTATGGAAACGGCTGAAAAATTACAGGTTGCAAATTACGG
TATGGGTGGACATTATGAAACTCACTTTGACTTCGGAAGGAGTGTTCCGC
TACGTCCACCGCCCGGAAAGAACCGAACCGATTATACTTACAGAACGCAT
AGAGGAGAAGATTTCAAGAAGGACGGACATCGGATTGCCACCTTCTTAGC
ATATATGTCGAATGTCGAAGCTGGAGGAGCAACAGTATTCACCAATATCG
GACAAGCTGTCCAACCAGCTAAGGGTGATGCAGTGTTTTGGTTCAATCTC
CATCACGATGGCTCTGGTGATTTCGATACAAGACATGCAGCTTGTCCTGT
ACTCATCGGTGAAAAATGGGTTTCAAATCGTTGGATTCATGAACGAGGTC
AAGAATTCCGAAGACGTTGTAATTTACGACCAGAAGACGATTAGAGGTTA
ATATACAAATTGGTTTGTTGGCACAAGACGGATCATCCAATGTTACGCAT
CAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATTGATCTTCT
ACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAACACTGGCT
ATCGATATGCTTCAACGAGCAACAGTACATAACCCGAGCACCGGAAAGTT
AGAATCAGCTGATTACAGAATAAGTAAAAGCGCTTGGTTGGACGAGAGTC
ATGATGGTATTGTTGACATAATGAATCGAAGGATAGAAGCTTACACTGGA
CTAAGTATGGAAACGGCTGAAAAATTACAGGTTGCAAATTACGGTATGGG
TGGACATTATGAAACTCACTTTGACTTCGGAAGGAGTGTTCCGCTACGTC
CACCGCCCGGAAAGAACCGAACCGATTATACTTACAGAACGCATAGAGGA
GAAGATTTCAAGAAGGACGGACATCGGATTGCCACCTTCTTAGCATATAT
GTCGAATGTCGAAGCTGGAGGAGCAACAGTATTCACCAATATCGGACAAG
CTGTCCAACCAGCTAAGGGTGATGCAGTGTTTTGGTTCAATCTCCATCAC
GATGGCTCTGGTGATTTCGATACAAGACATGCAGCTTGTCCTGTACTCAT
CGGTGAAAAATGGGTTTCAAATCGTTGGATTCATGAACGAGGTCAAGAAT
TCCGAAGACGTTGTAATTTACGACCAGAAGACGATTAGAGGTTAATATAC
AAATTGGTTTGTTGGCACAAGACGGATCATCCAATGTTACGCATCAAACC
CGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATTGATCTTCTACCGAC
AAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAACACTGGCTATCGAT
ATGCTTCAACGAGCAACAGTACATAACCCGAGCACCGGAAAGTTAGAATC
AGCTGATTACAGAATAAGTAAAAGCGCTTGGTTGGACGAGAGTCATGATG
GTATTGTTGACATAATGAATCGAAGGATAGAAGCTTACACTGGACTAAGT
ATGGAAACGGCTGAAAAATTACAGGTTGCAAATTACGGTATGGGTGGACA
TTATGAAACTCACTTTGACTTCGGAAGGAGTGTTCCGCTACGTCCACCGC
CCGGAAAGAACCGAACCGATTATACTTACAGAACGCATAGAGGAGAAGAT
TTCAAGAAGGACGGACATCGGATTGCCACCTTCTTAGCATATATGTCGAA
TGTCGAAGCTGGAGGAGCAACAGTATTCACCAATATCGGACAAGCTGTCC
AACCAGCTAAGGGTGATGCAGTGTTTTGGTTCAATCTCCATCACGATGGC
TCTGGTGATTTCGATACAAGACATGCAGCTTGTCCTGTACTCATCGGTGA
AAAATGGGTTTCAAATCGTTGGATTCATGAACGAGGTCAAGAATTCCGAA
GACGTTGTAATTTACGACCAGAAGACGATTAGAGGTTAATATACAAATTG
GTTTGTTGGCACAAGACGGATCATCCAATGTTACGCATCAAACCCGCTCG
CTTAGAACGTATTTACCCAAAGCCAGAATTGATCTTCTACCGACAAGCCA
TGTCTGACAGAGAAATCGAAAGAGTAAAAACACTGGCTATCGATATGCTT
CAACGAGCAACAGTACATAACCCGAGCACCGGAAAGTTAGAATCAGCTGA
TTACAGAATAAGTAAAAGCGCTTGGTTGGACGAGAGTCATGATGGTATTG
TTGACATAATGAATCGAAGGATAGAAGCTTACACTGGACTAAGTATGGAA
ACGGCTGAAAAATTACAGGTTGCAAATTACGGTATGGGTGGACATTATGA
AACTCACTTTGACTTCGGAAGGAGTGTTCCGCTACGTCCACCGCCCGGAA
AGAACCGAACCGATTATACTTACAGAACGCATAGAGGAGAAGATTTCAAG
AAGGACGGACATCGGATTGCCACCTTCTTAGCATATATGTCGAATGTCGA
AGCTGGAGGAGCAACAGTATTCACCAATATCGGACAAGCTGTCCAACCAG
CTAAGGGTGATGCAGTGTTTTGGTTCAATCTCCATCACGATGGCTCTGGT
GATTTCGATACAAGACATGCAGCTTGTCCTGTACTCATCGGTGAAAAATG
GGTTTCAAATCGTTGGATTCATGAACGAGGTCAAGAATTCCGAAGACGTT
GTAATTTACGACCAGAAGACGATTAGAGGTTAATATACAAATTGGTTTGT
TGGCACAAGACGGATCATCCAATGTTACGCATCAAACCCGCTCGCTTAGA
ACGTATTTACCCAAAGCCAGAATTGATCTTCTACCGACAAGCCATGTCTG
ACAGAGAAATCGAAAGAGTAAAAACACTGGCTATCGATATGCTTCAACGA
GCAACAGTACATAACCCGAGCACCGGAAAGTTAGAATCAGCTGATTACAG
AATAAGTAAAAGCGCTTGGTTGGACGAGAGTCATGATGGTATTGTTGACA
TAATGAATCGAAGGATAGAAGCTTACACTGGACTAAGTATGGAAACGGCT
GAAAAATTACAGGTTGCAAATTACGGTATGGGTGGACATTATGAAACTCA
CTTTGACTTCGGAAGGAGTGTTCCGCTACGTCCACCGCCCGGAAAGAACC
GAACCGATTATACTTACAGAACGCATAGAGGAGAAGATTTCAAGAAGGAC
GGACATCGGATTGCCACCTTCTTAGCATATATGTCGAATGTCGAAGCTGG
AGGAGCAACAGTATTCACCAATATCGGACAAGCTGTCCAACCAGCTAAGG
GTGATGCAGTGTTTTGGTTCAATCTCCATCACGATGGCTCTGGTGATTTC
GATACAAGACATGCAGCTTGTCCTGTACTCATCGGTGAAAAATGGGTTTC
AAATCGTTGGATTCATGAACGAGGTCAAGAATTCCGAAGACGTTGTAATT
TACGACCAGAAGACGATTAGAGGTTAATATACAAATTGGTTTGTTGGCAC
AAGACGGATCATCCAATGTTACGCATCAAACCCGCTCGCTTAGAACGTAT
TTACCCAAAGCCAGAATTGATCTTCTACCGACAAGCCATGTCTGACAGAG
AAATCGAAAGAGTAAAAACACTGGCTATCGATATGCTTCAACGAGCAACA
GTACATAACCCGAGCACCGGAAAGTTAGAATCAGCTGATTACAGAATAAG
TAAAAGCGCTTGGTTGGACGAGAGTCATGATGGTATTGTTGACATAATGA
ATCGAAGGATAGAAGCTTACACTGGACTAAGTATGGAAACGGCTGAAAAA
TTACAGGTTGCAAATTACGGTATGGGTGGACATTATGAAACTCACTTTGA
CTTCGGAAGGAGTGTTCCGCTACGTCCACCGCCCGGAAAGAACCGAACCG
ATTATACTTACAGAACGCATAGAGGAGAAGATTTCAAGAAGGACGGACAT
CGGATTGCCACCTTCTTAGCATATATGTCGAATGTCGAAGCTGGAGGAGC
AACAGTATTCACCAATATCGGACAAGCTGTCCAACCAGCTAAGGGTGATG
CAGTGTTTTGGTTCAATCTCCATCACGATGGCTCTGGTGATTTCGATACA
AGACATGCAGCTTGTCCTGTACTCATCGGTGAAAAATGGGTTTCAAATCG
TTGGATTCATGAACGAGGTCAAGAATTCCGAAGACGTTGTAATTTACGAC
CAGAAGACGATTAGAGGTTAATATACAAATTGGTTTGTTGGCACAAGACG
GATCATCCAATGTTACGCATCAAACCCGCTCGCTTAGAACGTATTTACCC
AAAGCCAGAATTGATCTTCTACCGACAAGCCATGTCTGACAGAGAAATCG
AAAGAGTAAAAACACTGGCTATCGATATGCTTCAACGAGCAACAGTACAT
AACCCGAGCACCGGAAAGTTAGAATCAGCTGATTACAGAATAAGTAAAAG
CGCTTGGTTGGACGAGAGTCATGATGGTATTGTTGACATAATGAATCGAA
GGATAGAAGCTTACACTGGACTAAGTATGGAAACGGCTGAAAAATTACAG
GTTGCAAATTACGGTATGGGTGGACATTATGAAACTCACTTTGACTTCGG
AAGGAGTGTTCCGCTACGTCCACCGCCCGGAAAGAACCGAACCGATTATA
CTTACAGAACGCATAGAGGAGAAGATTTCAAGAAGGACGGACATCGGATT
GCCACCTTCTTAGCATATATGTCGAATGTCGAAGCTGGAGGAGCAACAGT
ATTCACCAATATCGGACAAGCTGTCCAACCAGCTAAGGGTGATGCAGTGT
TTTGGTTCAATCTCCATCACGATGGCTCTGGTGATTTCGATACAAGACAT
GCAGCTTGTCCTGTACTCATCGGTGAAAAATGGGTTTCAAATCGTTGGAT
TCATGAACGAGGTCAAGAATTCCGAAGACGTTGTAATTTACGACCAGAAG
ACGATTAGAGGTTAATATACAAATTGGTTTGTTGGCACAAGACGGATCAT
CCAATGTTACGCATCAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCC
AGAATTGATCTTCTACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAG
TAAAAACACTGGCTATCGATATGCTTCAACGAGCAACAGTACATAACCCG
AGCACCGGAAAGTTAGAATCAGCTGATTACAGAATAAGTAAAAGCGCTTG
GTTGGACGAGAGTCATGATGGTATTGTTGACATAATGAATCGAAGGATAG
AAGCTTACACTGGACTAAGTATGGAAACGGCTGAAAAATTACAGGTTGCA
AATTACGGTATGGGTGGACATTATGAAACTCACTTTGACTTCGGAAGGAG
TGTTCCGCTACGTCCACCGCCCGGAAAGAACCGAACCGATTATACTTACA
GAACGCATAGAGGAGAAGATTTCAAGAAGGACGGACATCGGATTGCCACC
TTCTTAGCATATATGTCGAATGTCGAAGCTGGAGGAGCAACAGTATTCAC
CAATATCGGACAAGCTGTCCAACCAGCTAAGGGTGATGCAGTGTTTTGGT
TCAATCTCCATCACGATGGCTCTGGTGATTTCGATACAAGACATGCAGCT
TGTCCTGTACTCATCGGTGAAAAATGGGTTTCAAATCGTTGGATTCATGA
ACGAGGTCAAGAATTCCGAAGACGTTGTAATTTACGACCAGAAGACGATT
AGAGGTTAATATACAAATTGGTTTGTTGGCACAAGACGGATCATCCAATG
TTACGCATCAAACCCGCTCGCTTAGAACGTATTTACCCAAAGCCAGAATT
GATCTTCTACCGACAAGCCATGTCTGACAGAGAAATCGAAAGAGTAAAAA
CACTGGCTATCGATATGCTTCAACGAGCAACAGTACATAACCCGAGCACC
GGAAAGTTAGAATCAGCTGATTACAGAATAAGTAAAAGCGCTTGGTTGGA
CGAGAGTCATGATGGTATTGTTGACATAATGAATCGAAGGATAGAAGCTT
ACACTGGACTAAGTATGGAAACGGCTGAAAAATTACAGGTTGCAAATTAC
GGTATGGGTGGACATTATGAAACTCACTTTGACTTCGGAAGGAGTGTTCC
GCTACGTCCACCGCCCGGAAAGAACCGAACCGATTATACTTACAGAACGC
ATAGAGGAGAAGATTTCAAGAAGGACGGACATCGGATTGCCACCTTCTTA
GCATATATGTCGAATGTCGAAGCTGGAGGAGCAACAGTATTCACCAATAT
CGGACAAGCTGTCCAACCAGCTAAGGGTGATGCAGTGTTTTGGTTCAATC
TCCATCACGATGGCTCTGGTGATTTCGATACAAGACATGCAGCTTGTCCT
GTACTCATCGGTGAAAAATGGGTTTCAAATCGTTGGATTCATGAACGAGG
TCAAGAATTCCGAAGACGTTGTAATTTACGACCAGAAGACGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040452XLOC_040452Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064499-proteinTCONS_00064499-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064499-exon-scaffold_418-1491911889:240982..241146TCONS_00064499-exon-scaffold_418-1491911889:240982..241146Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:240982..241146TCONS_00064499-exon-scaffold_418-1510915933:240982..241146Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:240982..241146TCONS_00064499-exon-scaffold_418-1575043694:240982..241146Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:243924..243994TCONS_00064499-exon-scaffold_418-1491911889:243924..243994Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:243924..243994TCONS_00064499-exon-scaffold_418-1510915933:243924..243994Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:243924..243994TCONS_00064499-exon-scaffold_418-1575043694:243924..243994Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:246437..246536TCONS_00064499-exon-scaffold_418-1491911889:246437..246536Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:246437..246536TCONS_00064499-exon-scaffold_418-1510915933:246437..246536Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:246437..246536TCONS_00064499-exon-scaffold_418-1575043694:246437..246536Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:246838..246891TCONS_00064499-exon-scaffold_418-1491911889:246838..246891Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:246838..246891TCONS_00064499-exon-scaffold_418-1510915933:246838..246891Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:246838..246891TCONS_00064499-exon-scaffold_418-1575043694:246838..246891Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:247269..247319TCONS_00064499-exon-scaffold_418-1491911889:247269..247319Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:247269..247319TCONS_00064499-exon-scaffold_418-1510915933:247269..247319Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:247269..247319TCONS_00064499-exon-scaffold_418-1575043694:247269..247319Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:247775..247837TCONS_00064499-exon-scaffold_418-1491911889:247775..247837Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:247775..247837TCONS_00064499-exon-scaffold_418-1510915933:247775..247837Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:247775..247837TCONS_00064499-exon-scaffold_418-1575043694:247775..247837Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:248302..248370TCONS_00064499-exon-scaffold_418-1491911889:248302..248370Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:248302..248370TCONS_00064499-exon-scaffold_418-1510915933:248302..248370Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:248302..248370TCONS_00064499-exon-scaffold_418-1575043694:248302..248370Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:248942..249038TCONS_00064499-exon-scaffold_418-1491911889:248942..249038Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:248942..249038TCONS_00064499-exon-scaffold_418-1510915933:248942..249038Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:248942..249038TCONS_00064499-exon-scaffold_418-1575043694:248942..249038Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1491911889:249766..250392TCONS_00064499-exon-scaffold_418-1491911889:249766..250392Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1510915933:249766..250392TCONS_00064499-exon-scaffold_418-1510915933:249766..250392Clytia hemisphaericaexon
TCONS_00064499-exon-scaffold_418-1575043694:249766..250392TCONS_00064499-exon-scaffold_418-1575043694:249766..250392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:240982..250392 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.434	54.1523	45.0063	43.2731	64.2021	46.1465	49.9303	50.0017	21.2682	21.579	13.2476	10.967	13.706	11.2834	22.4414	14.9625	55.9342	61.0943	8.66581	10.3377	45.7148	46.5953	61.5406	56.1193	43.2374	44.4625	14.6656	14.8881	67.9697	62.3179
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006620Pro_4_hyd_alph
IPR005123Oxoglu/Fe-dep_dioxygenase
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0031418L-ascorbic acid binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0005506 iron ion binding
molecular_function GO:0031418 L-ascorbic acid binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00064499 vs. Swiss-Prot (Human)
Match: P4HA2 (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.769e-72
Identity = 123/231 (53.25%), Postives = 153/231 (66.23%), Query Frame = 1 
Query:   28 HKTDHPMLRIKPARLERIYPKPELIFYRQAMSDREIERVKTLAIDMLQRATVHNPSTGKLESADYRISKSAWLDESHDGIVDIMNRRIEAYTGLSMETAEKLQVANYGMGGHYETHFDFGRSVPLRPPPGKNRTDYTYRTHRGEDFKKDGHRIATFLAYMSNVEAGGATVFTNIGQAVQPAKGDAVFWFNLHHDGSGDFDTRHAACPVLIGEKWVSNRWIHERGQEFRRRC 720
            H    P L I P + E  +  P ++ Y   MSD EIER+K +A   L RATV +P TG L  A YR+SKS+WL+E  D +V  +NRR++  TGL+++TAE LQVANYG+GG YE HFDF R          N    T++ H G      G+R+ATFL YMS+VEAGGATVF ++G A+ P KG AVFW+NL   G GD+ TRHAACPVL+G KWVSN+W HERGQEF R C
Sbjct:  315 HGNRAPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSR----------NDERDTFK-HLG-----TGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPC 529
The following BLAST results are available for this feature:
BLAST of TCONS_00064499 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA21.769e-7253.25Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
back to top