TCONS_00064496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064496
Unique NameTCONS_00064496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064496 ID=TCONS_00064496|Name=TCONS_00064496|organism=Clytia hemisphaerica|type=transcript|length=420bp
TAGCATTTGTTTTTAATATATTTGAAGAAACTAAAAACTATCGTTCCCAT
AGTGTGGATATAAAAAATTAACCCCGAACTTATTTATCACGAAAGATTAT
CAAAAAAATCTCATTAGGATTATGCTTTCAATAAATCATAACCAATATCA
AGATAAAActtaagaaataaaaattagaaaaatcatGACCATTTGATAGC
ATCGCCAATCGCANTCGTGAAGAAAAGGATCGATGATTACATATACCAAA
TTCATTATCCAGGGTTGAAATCCATACCCAAACTTAACCATAATTGGTTC
AGCAAGGACCATCTAACAGTTTGAATGCAGCGAAACTAACCAAGGGACAA
TTATCATTGAAATATGATTTCAGGAATAAGCCAACCTGTAAAGGTAAAAC
ATAAATTAGTCGTTTTAGGC
Run BLAST on NCBI

transcript from alignment at scaffold_418:171877..172352+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064496 ID=TCONS_00064496|Name=TCONS_00064496|organism=Clytia hemisphaerica|type=transcript|length=476bp|location=Sequence derived from alignment at scaffold_418:171877..172352+ (Clytia hemisphaerica)
TAGCATTTGTTTTTAATATATTTGAAGAAACTAAAAACTATCGTTCCCAT
AGTGTGGATATAAAAAATTAACCCCGAACTTATTTATCACGAAAGATTAT
CAAAAAAATCTCATTAGGATTATGCTTTCAATAAATCATAACCAATATCA
AGATAAAActtaagaaataaaaattagaaaaatcatGACCATTTGATAGC
ATCGCCAATCGCANATTAGgaaataaaaattagaaaaatcatGACCTTTT
GATAGCATCGCCGATCACACTCGTGAAGAAAAGGATCGATGATTACATAT
ACCAAATTCATTATCCAGGGTTGAAATCCATACCCAAACTTAACCATAAT
TGGTTCAGCAAGGACCATCTAACAGTTTGAATGCAGCGAAACTAACCAAG
GGACAATTATCATTGAAATATGATTTCAGGAATAAGCCAACCTGTAAAGG
TAAAACATAAATTAGTCGTTTTAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040449XLOC_040449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064496-exon-scaffold_418-1491911889:171877..172090TCONS_00064496-exon-scaffold_418-1491911889:171877..172090Clytia hemisphaericaexon
TCONS_00064496-exon-scaffold_418-1510915933:171877..172090TCONS_00064496-exon-scaffold_418-1510915933:171877..172090Clytia hemisphaericaexon
TCONS_00064496-exon-scaffold_418-1575043694:171877..172090TCONS_00064496-exon-scaffold_418-1575043694:171877..172090Clytia hemisphaericaexon
TCONS_00064496-exon-scaffold_418-1491911889:172147..172352TCONS_00064496-exon-scaffold_418-1491911889:172147..172352Clytia hemisphaericaexon
TCONS_00064496-exon-scaffold_418-1510915933:172147..172352TCONS_00064496-exon-scaffold_418-1510915933:172147..172352Clytia hemisphaericaexon
TCONS_00064496-exon-scaffold_418-1575043694:172147..172352TCONS_00064496-exon-scaffold_418-1575043694:172147..172352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:171877..172352 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.316895	0	0	0	0.428239	0.30664	0	0	0.00777891	0	0.281204	0.928106	0	0	0	0	0	0.782883	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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