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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064494 ID=TCONS_00064494|Name=TCONS_00064494|organism=Clytia hemisphaerica|type=transcript|length=685bp
taaatccagaatttcaaaatggtgaaGTATACTTTGAACCACTTCAATAA
AAACTTCAATGCTATCAGCTTAATATTTCATGCTGCTGGAGTTGAATTCA
ATGACAATTATATGACCCGAGAGCAGTGGCTGGAAAACAAATCGAATGCT
CAAAGATTTCCACTCCACCAATTGCCGACTTTAGTGGTGGATGATAACGT
CATCTGTCAATCAAAAGCTATTTGTCGATTTCTTGCTAGAGAGCTTGGTT
TCTATGGCAACAGTTCTTTGGAACAAGCTGTAATAGATGAAGTTTGTGAA
ACATTACACGAATTAGGAGTGGAACTAATGAAAATTGCTTTAGCTGGACA
CGATGCTGAAACCAAGAAAACAAAATTGGAAGAATTTTACGCTTCAGAAA
AATACAAGTTATTGATGGGATTCATTTCAAAAACCTTGAAGCGACACAAC
GATGGAAAAGCTTTTATCGCAGGAGAAAAGATTTCCATAGCTGATTTCGT
CTTGGTTGGACTTTTATGTATGATCGAATTAGACTTGAAGGAGTTTCCAG
AAATCTCAGCACTTCGTAAACGAGTATTGAGcattgaaaatatcaaaaaa
tacatGGACacacagaaaaaataatttattatttGACGCTATTTGTATAA
Tagtttttgaataaatttaaatagaaaattttctg Run BLAST on NCBI transcript from alignment at scaffold_418:146897..153476+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064494 ID=TCONS_00064494|Name=TCONS_00064494|organism=Clytia hemisphaerica|type=transcript|length=6580bp|location=Sequence derived from alignment at scaffold_418:146897..153476+ (Clytia hemisphaerica)
taaatccagaatttcaaaatggtgaaGTATACTTTGAACCACTTCAATAA
AAACTTCAATGCTATCAGCTTAATATTTCATGCTGCTGGAGTTGAATTCA
ATGACAATTATATGACCCGAGAGCAGTGGCTGGAAAACAAATCGAATGGT
ATGTATATTTTTGCCCGGGGAGGGGgtgcactcaaggtaaacgaccgtac
gtgcggcccttaagggtcccttttccaagcttcccaaagtgcactctaaa
ggtttaaaatttggaaaatctgacgATATTGccaaaaaattggtcaaatt
ttttcgaGAAAATGCATCTTAAGGGTCaatttttcgcccaaatttactca
aatctagctaaattttctctgcactgtaaaggtccgatttcaaaggccta
attttgggccgcacgtcatcattttttgaatCGAGCTCCCcccagatttt
tttctgttgtGTTCTTTTCATTCTGTCATTGCTAAAATGTTTTGACACCC
GTTACGATCACGATTACGCAAGAATAGCGAAAAATAGTCCTATCAAGCAA
TCACTGTATAAACAGAGTTACGCTATCACGCAGTGAAAGAGAAGCCCCAC
ACAGCATCGAGCTAGCCGCTCTGTGGCTTCAAGTCTGTCTTAAGTCTGAA
AAGTAGCAACAGACTGTATTATGGGATTGATTTGTTTCAATACTTTTACT
TGTTTTTTCAGCTCAAAGATTTCCACTCCACCAATTGCCGACTTTAGTGG
TGGATGATAACGTCATCTGTCAATCAAAAGCTATTTGTCGATTTCTTGCT
AGAGAGCTTGGTTTCTATGGCAACAGTTCTTTGGAACAAGCTGTAATAGA
TGAAGTTTGTGAAACATTACACGAATTAGGAGTGGAACTAATGAAAATTG
CTTTAGCTGGACACGATGCTGAAACCAAGGTATTGGAGCTTCTTCACAAA
GGGGAACTCAAGGCATCGGGTAAAATGACGTGGCGGCGTGAAAATCATAG
CTAGTTCtctgaataaattgaaataaaattggcttccacacccggggggg
gggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTagattttttagataaa
aatacCCTATTTTTGAACTATTTTCCAACAACAGATTGAAACAATTTCAT
AGCTAACTTTTTAACCATATACAACCTGGAAAAATAACTATCTTTCGGTG
GTTGAGCAGGCACGTTCAATTATTTTATCAATACAAAAAAGacatgaatg
aaaaaaaattatttttgaaaaattattgggggggggcaaCTGCCCCTGCT
GCCCCCCGGTTGCTACGGGCCtgcaacctggttgcttataaaaaacgtgt
atggtaCGGTTAGTTAAAATGTTGTTCCCTGCACACTGGTTTTCTTTGCT
GATaagtcattaagtcattaatcgcacgatgggttattttttcttatttg
gcaccccctcaaagagagcaattaatcgttaattgcatcctgtagagagc
aattaatcgttaatcacactcttcgatgctgcgccaatgtttacaaaaat
gattttaatgttttttcttacactttttttgcatcgaacgttttaattgc
attcgaaattcattttttgagaacgaaaatcaataaacaacaataaaaga
aagacacagaGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNagaaaaatataaaactctcagtgtaatttctgtaatt
tactttcctaactgggaaaaagtagtgaaagccattgtgcgattagctcg
taatcacataataactcgtgatttttttgtttcgaattttcgtcgtcctt
tcggactcggaaaattaataacaaaaaaatcactcgtgcaattatattcg
aattgcactcgttatcatgtgattacatataatatactaatcacatgttt
tgactgcattgatgcaattttgcaacccgtgtattgagACGCCTGGGATA
ATCTAAATACCTTTGAGATGTGGATATCATGGACTTTATTCTATTGCTTT
TTCCTTCTAGAAAACAAAATTGGAAGAATTTTACGCTTCAGAAAAATACA
AGTTATTGATGGGATTCATTTCAAAAACCTTGAAGCGACACAACGATGGA
AAAGCTTTTATCGCAGGAGAAAAGGTAAATTATAAAATTTAGCGGTTAAA
AGGATATAGAATGTATGTATTTAATGTCACCTTTGCGCGGGGGTTCTGCT
GAGACCTGTTTAAAGTTTTTGTAGGTCAAAGTTTGACATGACAGGCACAA
CTATTGACGAAAAACATAGGGAAATTgacgaattttgaaattgtttttta
acgAAAAATGACCCATGCTCAAACACATGAAGAAATATGGgtcttttaag
attttaaaattttaagagaCCTTTAGTCTAGTTTACAAGATGCTAAAGTC
GAGCCAGTACGCTTAGCACACTGGAAAGttgtttgattaaaaatatttcc
atctagtttgtgatacaggggtgtcgGTGGCATGCTATGAAATATATTCT
TTGCTGGTCTAGCAtgatagccccccccccccagcggtttgcgtgaatgc
gtgaatgggcattttcggttgcgtgagtgcgtgaaaattgaaaaaaaaat
gcgtgaatgcgtgaattgaaaaaacttgcgtgaacgtgaaaatccacttt
atgattgcgtgaatgcgtgaatctgggctatttcgTGCGTGAATATgtga
attttcacttttttccaccgGTTGTATGCAGTGTTcctgattttccaatg
tttccccgatttttactgaaaattttctgattgggttattgcgtgaaaat
cgaggaaaatttgcgtgaatgcgtgaattacgAAAAggattgcgtgattg
cgtgaattgagagtccgctggggggcctcgtGATATGACGCCATTTTAGG
GAGATTTATGTTTTCTGCAAATGACATGGTACAGGCGAGTAAAATATTGA
GTTTTATTCCCTCTGTTGAAGGGTTCCCCCTTGATGAAAAGAACTTTCGA
ACGTTTTTCTTCATCTTATTGATGAACTCTGTATTCTTTTTAAGCTTTCG
TTGGCTGATTTCAATCTTGTTGGAATGTTATGTTTCATTGAATTAGATTT
GAAAGAGTTTCCAGAAATCTCAGCTCTTCGTGAACGAGTACTTAGCGTTG
AAAAGATCAAAAAATTCATGGAAACACAAAAGGAATAATTTATTTTAATA
ATGTTTTGTAAGTATATAAAACAATATTCTCGCCGGAACCGTTGGTTGGA
CCTTGgctttccaacggttctggtggctagTCAGAAGACGACATGAAAGC
GACTGTATTCGCTtcattttaacaatattttgtataattttgtataggtt
tttatatttttttagataaatttatgaaatttttgcagaacatcaacttt
taaaattgcattccgaaaaattaaaagttaaaatttcgcgattgccagtt
tctggaaattttcgcgtgtatttaatttcgcgaaatttggcctaaaaatc
gcgaaattaagtacccgcgaaataTAATACCTATAAGGTAAGTAATACTC
CCAGCATATTTTTATAGAGGTTTGTAGAAGGGGTTTTCACCTTTTCTATC
CATACAAGCATGTCTTCCCTTCACAATGGGATTTCACATTTTGTTCTCTT
CAAAAAATGTTAGTGGGAATTCGGCAGGTGGAAACTCTGACAATAAGATA
tccctttcttctcttttttcttgaaattttaaaagaaatttcattTCTCA
TTTGAAACAAGAAATTGTGATTTTAAACCTGAAACTTTAGATTTTTGTTT
TACAATCATTTTCACATCATGGTATGAAATCTTAGTTTCTGAGTGCTTCG
GTtcgtttcaaagttttttttgaccTATAAAAACAGTTTTATGTTTATGT
TATGAAAATTCTGTTGGCTGACATACTTTCAAAAAAGCGTTGTATATAAA
GAGTATAGTATTAAAGATTATCAATCAATATCTTCTGTTATTAAAATCTT
TAATTCTCTTCTTTGTCGGATGTCAGAAACAGCCAACTACCATTTAATTG
AAGTAACACTCGATGAGTGGGTGGTTTGAACTAGTATAGTCTAGAATGTt
tgaactacacgttttttataagagcatccaatatttcagatgttcttaac
tttttgagttttaagcctaaaaatgttcttaacatgttcttatattcaca
attttgtaagtatttttgcatattttcctaagaAATTAGGtggaaaagcc
ttaaaatgttctaattattttggccatcgaagccttatgttcttataaaa
aaagtaattCATGGTCTGGATCATTCTAGAATGTTCTCCTTCTAGAACAA
ATTGTTTTATAATTgtttaagtttttttctttataagcattgtgtttata
agcatatctaggatCATATATGGCGAAAATTTAAGCATGTGCTAAACATC
ACCTTGAACCTTCATTTTTAGAACTTGTTTGTTTTTAgctctaaaatttt
gcttaagatataagcatcccttaaagcatttttcagctttgtaaatctct
cgatctaagcatttccgagccagcttttggatttttgtatgcttataaaa
aaaacatgtagtggTTATTAATTGTTTGTAATACGATATTTTGCTGAAGT
AATCTAATTCGTTCTTGTATAAATAGACGTGTTAGAGAAAGGGGAGGCAT
CTCATTTCGGTTCAGACTTTCTGCTTGCAACGTTGAGTGAAGAGAAAAAA
TACAGATTTCAAAATGGTCAAGTACACATTGAACTACTTTGATACAGCTG
GTCGTGGTGAAGCAATCAGGTTAATGTTTCATGCCGCTGGAGTTGACTTC
AATGATAACAGAATGTCTGGAGAGGAGTGGGCCAAAAATAAAACAGATGG
TATGTTCTTATCTTTTACGTCTTTCTGCTTTTGTAAATTAGCACTTACAC
ATCCTGTCTTGTTGACCTAGCCAGAAATTAATCTGGCTATTTCGTATTTG
TAAGTCTAGTTGTTCTAAGTTATTCGGATCTACTTTTGCAATCTATCGCA
AGAAATAAGTTCATTCTCATTGTTTGGTTCGCATCTTTGACTTGACTTGa
catatttgtttattttccttTTAGCCAAAAGATTTCCACTTCACCAAATG
CCAACTTTGGAAGTTGATGATAACGTCATCTGTCAATCAAGTGCTATTGT
TCGATTCGTTGCTAGGGAACTTGGCTTCTATGGCAGTAGTTCGTTGGAAC
AAGCTGTGATCGATCAAGTTTGTGAGACGTTCAGTGACATTGGAGAACAG
ttgatcaaaattatatttggaGGGAATGACGAGGAAGCAAAGGTACCAGA
AATTTTTCCTTATTCTCagcttcagttgagctacaatctgacaatgtctg
tctgtgtgtggctgtctgtctgtctgtatgtctgtcacaaaaactttagg
gcagcctggagacttcaaaaattgttcgatttggctgaaattttgcacac
ttgttctttgggtgaatatctggggttctacaattgggcctatgaatagt
ttgatggcactgaagttgagcccagtgcgttgcgcacgttcgactatttt
gaAATCTATTGCAAAACGTTCAGCCAActctcaaaaacatattttcacAG
CTTGTAATttgtcaacttgaaaaatatagcttttatTGTTCATTCTTTTA
AGAAAACAAAATTGCAAGAATTTTACGCCTCTGACAAATACAAGTTGTTG
ATGGGATTCATTTCAAAAACCTTGAAGCGACACAACGAGGGAAAAGCTTA
CATaattggagaaaaggtaaaaatcCGTTCTTTTTAAACGATTTTATATT
GCTTCTTTTGACAACACAATTTCCTTTGACCCCTAACCCTTGATGCCCat
aaatattgcaaaatctGTTTCAAAGGAAGTTCTGTTTTTCCTTAATCACA
TCCTTGTATCCTTAAACAGTCCCAATGCCCCCCCTGTTCATAACTTAAGT
ACTGCTCCCTGTGACGCCAAACGTATTTATGCCAACCTTAGCTGCGACAG
CTCTAGAACAAAAACGATAAAGTtggtttttttttacaagtcTTTATTTG
AGTTTGATTTATGTCTCTGTTTTAGATTTCCATAGCTGATTTCGTCTTGG
TTGGACTTTTATGTATGATCGAATTAGACTTGAAGGAGTTTCCAGAAATC
TCAGCACTTCGTAAACGAGTATTGAGcattgaaaatatcaaaaaatacat
GGACacacagaaaaaataatttattatttGACGCTATTTGTATAATagtt
tttgaataaatttaaatagaaaattttctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064494-exon-scaffold_418-1491911889:146897..147044 | TCONS_00064494-exon-scaffold_418-1491911889:146897..147044 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1510915933:146897..147044 | TCONS_00064494-exon-scaffold_418-1510915933:146897..147044 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1575043694:146897..147044 | TCONS_00064494-exon-scaffold_418-1575043694:146897..147044 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1491911889:147608..147825 | TCONS_00064494-exon-scaffold_418-1491911889:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1510915933:147608..147825 | TCONS_00064494-exon-scaffold_418-1510915933:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1575043694:147608..147825 | TCONS_00064494-exon-scaffold_418-1575043694:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1491911889:149157..149270 | TCONS_00064494-exon-scaffold_418-1491911889:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1510915933:149157..149270 | TCONS_00064494-exon-scaffold_418-1510915933:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1575043694:149157..149270 | TCONS_00064494-exon-scaffold_418-1575043694:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1491911889:153272..153476 | TCONS_00064494-exon-scaffold_418-1491911889:153272..153476 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1510915933:153272..153476 | TCONS_00064494-exon-scaffold_418-1510915933:153272..153476 | Clytia hemisphaerica | exon |
| TCONS_00064494-exon-scaffold_418-1575043694:153272..153476 | TCONS_00064494-exon-scaffold_418-1575043694:153272..153476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:146897..153476 + |
Blast
BLAST of TCONS_00064494 vs. Swiss-Prot (Human)
Match: GSTA2 (Glutathione S-transferase A2 OS=Homo sapiens GN=GSTA2 PE=1 SV=4) HSP 1 Score: 77.0258 bits (188), Expect = 5.346e-17 Identity = 56/186 (30.11%), Postives = 93/186 (50.00%), Query Frame = 1
Query: 61 AISLIFHAAGVEFNDNYMTREQWLENKSNAQRFPLHQLPTLVVDDNVICQSKAICRFLARELGFYGNSSLEQAVIDEVCETLHELGVELMKIALAGHDAETKKTKLEEFYASEKYKLLMGFISKTLKRHNDGKAFIAGEKISIADFVLVGLLCMI-ELD---LKEFPEISALRKRVLSIENIKKYM 606
+I + AAGVEF + ++ + L+ N Q+P + +D + Q++AI ++A + YG E+A+ID E + +LG M + L E + KL K + F K LK H G+ ++ G K+S AD LV LL + ELD + FP + AL+ R+ ++ +KK++
Sbjct: 18 SIRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGE--MILLLPFSQPEEQDAKLALIQEKTKNRYFPAF-EKVLKSH--GQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFL 198
The following BLAST results are available for this feature:
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