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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064493 ID=TCONS_00064493|Name=TCONS_00064493|organism=Clytia hemisphaerica|type=transcript|length=795bp
tttagtgaaaacaaaaataaatccagaatttcaaaatggtgaaGTATACT
TTGAACCACTTCAATAAAAACTTCAATGCTATCAGCTTAATATTTCATGC
TGCTGGAGTTGAATTCAATGACAATTATATGACCCGAGAGCAGTGGCTGG
AAAACAAATCGAATGCTCAAAGATTTCCACTCCACCAATTGCCGACTTTA
GTGGTGGATGATAACGTCATCTGTCAATCAAAAGCTATTTGTCGATTTCT
TGCTAGAGAGCTTGGTTTCTATGGCAACAGTTCTTTGGAACAAGCTGTAA
TAGATGAAGTTTGTGAAACATTACACGAATTAGGAGTGGAACTAATGAAA
ATTGCTTTAGCTGGACACGATGCTGAAACCAAGAAAACAAAATTGGAAGA
ATTTTACGCTTCAGAAAAATACAAGTTATTGATGGGATTCATTTCAAAAA
CCTTGAAGCGACACAACGATGGAAAAGCTTTTATCGCAGGAGAAAAGCTT
TCGTTGGCTGATTTCAATCTTGTTGGAATGTTATGTTTCATTGAATTAGA
TTTGAAAGAGTTTCCAGAAATCTCAGCTCTTCGTGAACGAGTACTTAGCG
TTGAAAAGATCAAAAAATTCATGGAAACACAAAAGGAATAATTTATTTTA
ATAATGTTTTGTAAGTATATAAAACAATATTCTCGCCGGAACCGTTGGTT
GGACCTTGgctttccaacggttctggtggctagTCAGAAGACGACATGAA
AGCGACTGTATTCGCTtcattttaacaatattttgtataattttg Run BLAST on NCBI transcript from alignment at scaffold_418:146880..150488+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064493 ID=TCONS_00064493|Name=TCONS_00064493|organism=Clytia hemisphaerica|type=transcript|length=3609bp|location=Sequence derived from alignment at scaffold_418:146880..150488+ (Clytia hemisphaerica)
tttagtgaaaacaaaaataaatccagaatttcaaaatggtgaaGTATACT
TTGAACCACTTCAATAAAAACTTCAATGCTATCAGCTTAATATTTCATGC
TGCTGGAGTTGAATTCAATGACAATTATATGACCCGAGAGCAGTGGCTGG
AAAACAAATCGAATGGTATGTATATTTTTGCCCGGGGAGGGGgtgcactc
aaggtaaacgaccgtacgtgcggcccttaagggtcccttttccaagcttc
ccaaagtgcactctaaaggtttaaaatttggaaaatctgacgATATTGcc
aaaaaattggtcaaattttttcgaGAAAATGCATCTTAAGGGTCaatttt
tcgcccaaatttactcaaatctagctaaattttctctgcactgtaaaggt
ccgatttcaaaggcctaattttgggccgcacgtcatcattttttgaatCG
AGCTCCCcccagatttttttctgttgtGTTCTTTTCATTCTGTCATTGCT
AAAATGTTTTGACACCCGTTACGATCACGATTACGCAAGAATAGCGAAAA
ATAGTCCTATCAAGCAATCACTGTATAAACAGAGTTACGCTATCACGCAG
TGAAAGAGAAGCCCCACACAGCATCGAGCTAGCCGCTCTGTGGCTTCAAG
TCTGTCTTAAGTCTGAAAAGTAGCAACAGACTGTATTATGGGATTGATTT
GTTTCAATACTTTTACTTGTTTTTTCAGCTCAAAGATTTCCACTCCACCA
ATTGCCGACTTTAGTGGTGGATGATAACGTCATCTGTCAATCAAAAGCTA
TTTGTCGATTTCTTGCTAGAGAGCTTGGTTTCTATGGCAACAGTTCTTTG
GAACAAGCTGTAATAGATGAAGTTTGTGAAACATTACACGAATTAGGAGT
GGAACTAATGAAAATTGCTTTAGCTGGACACGATGCTGAAACCAAGGTAT
TGGAGCTTCTTCACAAAGGGGAACTCAAGGCATCGGGTAAAATGACGTGG
CGGCGTGAAAATCATAGCTAGTTCtctgaataaattgaaataaaattggc
ttccacacccggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTC
TagattttttagataaaaatacCCTATTTTTGAACTATTTTCCAACAACA
GATTGAAACAATTTCATAGCTAACTTTTTAACCATATACAACCTGGAAAA
ATAACTATCTTTCGGTGGTTGAGCAGGCACGTTCAATTATTTTATCAATA
CAAAAAAGacatgaatgaaaaaaaattatttttgaaaaattattgggggg
gggcaaCTGCCCCTGCTGCCCCCCGGTTGCTACGGGCCtgcaacctggtt
gcttataaaaaacgtgtatggtaCGGTTAGTTAAAATGTTGTTCCCTGCA
CACTGGTTTTCTTTGCTGATaagtcattaagtcattaatcgcacgatggg
ttattttttcttatttggcaccccctcaaagagagcaattaatcgttaat
tgcatcctgtagagagcaattaatcgttaatcacactcttcgatgctgcg
ccaatgtttacaaaaatgattttaatgttttttcttacactttttttgca
tcgaacgttttaattgcattcgaaattcattttttgagaacgaaaatcaa
taaacaacaataaaagaaagacacagaGAGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaaaaatataaaactctca
gtgtaatttctgtaatttactttcctaactgggaaaaagtagtgaaagcc
attgtgcgattagctcgtaatcacataataactcgtgatttttttgtttc
gaattttcgtcgtcctttcggactcggaaaattaataacaaaaaaatcac
tcgtgcaattatattcgaattgcactcgttatcatgtgattacatataat
atactaatcacatgttttgactgcattgatgcaattttgcaacccgtgta
ttgagACGCCTGGGATAATCTAAATACCTTTGAGATGTGGATATCATGGA
CTTTATTCTATTGCTTTTTCCTTCTAGAAAACAAAATTGGAAGAATTTTA
CGCTTCAGAAAAATACAAGTTATTGATGGGATTCATTTCAAAAACCTTGA
AGCGACACAACGATGGAAAAGCTTTTATCGCAGGAGAAAAGGTAAATTAT
AAAATTTAGCGGTTAAAAGGATATAGAATGTATGTATTTAATGTCACCTT
TGCGCGGGGGTTCTGCTGAGACCTGTTTAAAGTTTTTGTAGGTCAAAGTT
TGACATGACAGGCACAACTATTGACGAAAAACATAGGGAAATTgacgaat
tttgaaattgttttttaacgAAAAATGACCCATGCTCAAACACATGAAGA
AATATGGgtcttttaagattttaaaattttaagagaCCTTTAGTCTAGTT
TACAAGATGCTAAAGTCGAGCCAGTACGCTTAGCACACTGGAAAGttgtt
tgattaaaaatatttccatctagtttgtgatacaggggtgtcgGTGGCAT
GCTATGAAATATATTCTTTGCTGGTCTAGCAtgatagcccccccccccca
gcggtttgcgtgaatgcgtgaatgggcattttcggttgcgtgagtgcgtg
aaaattgaaaaaaaaatgcgtgaatgcgtgaattgaaaaaacttgcgtga
acgtgaaaatccactttatgattgcgtgaatgcgtgaatctgggctattt
cgTGCGTGAATATgtgaattttcacttttttccaccgGTTGTATGCAGTG
TTcctgattttccaatgtttccccgatttttactgaaaattttctgattg
ggttattgcgtgaaaatcgaggaaaatttgcgtgaatgcgtgaattacgA
AAAggattgcgtgattgcgtgaattgagagtccgctggggggcctcgtGA
TATGACGCCATTTTAGGGAGATTTATGTTTTCTGCAAATGACATGGTACA
GGCGAGTAAAATATTGAGTTTTATTCCCTCTGTTGAAGGGTTCCCCCTTG
ATGAAAAGAACTTTCGAACGTTTTTCTTCATCTTATTGATGAACTCTGTA
TTCTTTTTAAGCTTTCGTTGGCTGATTTCAATCTTGTTGGAATGTTATGT
TTCATTGAATTAGATTTGAAAGAGTTTCCAGAAATCTCAGCTCTTCGTGA
ACGAGTACTTAGCGTTGAAAAGATCAAAAAATTCATGGAAACACAAAAGG
AATAATTTATTTTAATAATGTTTTGTAAGTATATAAAACAATATTCTCGC
CGGAACCGTTGGTTGGACCTTGgctttccaacggttctggtggctagTCA
GAAGACGACATGAAAGCGACTGTATTCGCTtcattttaacaatattttgt
ataattttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064493-exon-scaffold_418-1491911889:146880..147044 | TCONS_00064493-exon-scaffold_418-1491911889:146880..147044 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1510915933:146880..147044 | TCONS_00064493-exon-scaffold_418-1510915933:146880..147044 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1575043694:146880..147044 | TCONS_00064493-exon-scaffold_418-1575043694:146880..147044 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1491911889:147608..147825 | TCONS_00064493-exon-scaffold_418-1491911889:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1510915933:147608..147825 | TCONS_00064493-exon-scaffold_418-1510915933:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1575043694:147608..147825 | TCONS_00064493-exon-scaffold_418-1575043694:147608..147825 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1491911889:149157..149270 | TCONS_00064493-exon-scaffold_418-1491911889:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1510915933:149157..149270 | TCONS_00064493-exon-scaffold_418-1510915933:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1575043694:149157..149270 | TCONS_00064493-exon-scaffold_418-1575043694:149157..149270 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1491911889:150191..150488 | TCONS_00064493-exon-scaffold_418-1491911889:150191..150488 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1510915933:150191..150488 | TCONS_00064493-exon-scaffold_418-1510915933:150191..150488 | Clytia hemisphaerica | exon |
| TCONS_00064493-exon-scaffold_418-1575043694:150191..150488 | TCONS_00064493-exon-scaffold_418-1575043694:150191..150488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:146880..150488 + |
Blast
BLAST of TCONS_00064493 vs. Swiss-Prot (Human)
Match: GSTA2 (Glutathione S-transferase A2 OS=Homo sapiens GN=GSTA2 PE=1 SV=4) HSP 1 Score: 82.4185 bits (202), Expect = 1.237e-18 Identity = 57/188 (30.32%), Postives = 96/188 (51.06%), Query Frame = 3
Query: 78 AISLIFHAAGVEFNDNYMTREQWLENKSNAQRFPLHQLPTLVVDDNVICQSKAICRFLARELGFYGNSSLEQAVIDEVCETLHELGVELMKIALAGHDAETKKTKLEEFYASEKYKLLMGFISKTLKRHNDGKAFIAGEKLSLADFNLVGMLCFI-ELD---LKEFPEISALRERVLSVEKIKKFMET 629
+I + AAGVEF + ++ + L+ N Q+P + +D + Q++AI ++A + YG E+A+ID E + +LG M + L E + KL K + F K LK H G+ ++ G KLS AD +LV +L ++ ELD + FP + AL+ R+ ++ +KKF++
Sbjct: 18 SIRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGE--MILLLPFSQPEEQDAKLALIQEKTKNRYFPAF-EKVLKSH--GQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQP 200
The following BLAST results are available for this feature:
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