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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064488 ID=TCONS_00064488|Name=TCONS_00064488|organism=Clytia hemisphaerica|type=transcript|length=950bp
AACGTTTCTTGTATTTGAAATGAAACTTAATACTTCTGCTTTAAAATTTA
TATCACTCATCTGAAAGTGTGATTGTGAGCACATCAAAGATCCTTGAGCA
CATAATACAAAGATTTCGGTTCTTTcgactttttcatttttagtcaatac
aaaaattattcacaaaattCGATAATGGTGAAGTACACATTGAACTACTT
TGATACAGCTGGTCGTGCAGAAGCAATCAGGTTGATGTTTCATGCCGCTG
GAGTTGACTTCAATGATAACAGAATGTCCAGAGAGGAATGGCTAGAAAAT
AAAACAGATGCTCGAAGATTTCCACTCCATCAAATGCCAACTTTGGAAGT
TGATGATAACGTTATCTGTCAATCAAGTGCTATCGGTCGATTTGTTGCTA
GGGAACTTGGCTTCTATGGAAACAATTCTCTGGAACAGGCTGTGATCGAT
GAAGTTTGTGAAACATTGCATGATTTGGGTTTGGAACTGATCAAAATTAT
ATTTGCCGGATACGACGATGAAACAAAGAAAACAAAATTGGAAGAATTTT
ACGCTTCAGAAAAATACAAGTTATTGATGGGATTCATTTCAAAAACCTTG
AAGCGACACAACGATGGAAAAGCTTTTATCGCAGGAGAAAAGCTTTCCCT
GGCTGATTTCAATCTGGTTGGAATcttgattttcattgaattaGATTTGA
AGGATTTTCCAGAAATCTCAGCACTTCGTGAACGAGTACTTGGCGTTGAA
AAGATCAAAAAATACATGGACACACAGAAAAAGTGATTCACTATTTGACA
CTATTAGTATCATCttttattaatttcatttttagaaaatttttaatcGC
ACGTAATTTTCATTTCCAATTAATTTATCTCTAGACTTTTTGAATTATAA
AGGTATATTCATTTGTCAGCAAGTAAATTGTCCGAATTTGATATGGTTTC Run BLAST on NCBI transcript from alignment at scaffold_418:139674..146186+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064488 ID=TCONS_00064488|Name=TCONS_00064488|organism=Clytia hemisphaerica|type=transcript|length=6513bp|location=Sequence derived from alignment at scaffold_418:139674..146186+ (Clytia hemisphaerica)
AACGTTTCTTGTATTTGAAATGAAACTTAATACTTCTGCTTTAAAATTTA
TATCACTCATCTGAAAGTGTGATTGTGAGCACATCAAAGATCCTTGAGCA
CATAATACAAAGATTTCGGTTCTTTcgactttttcatttttagtcaatac
aaaaattattcacaaaattCGATAATGGTGAAGTACACATTGAACTACTT
TGATACAGCTGGTCGTGCAGAAGCAATCAGGTTGATGTTTCATGCCGCTG
GAGTTGACTTCAATGATAACAGAATGTCCAGAGAGGAATGGCTAGAAAAT
AAAACAGATGGTATGTTCACTCTATTCACTATCTTTTAGTCATATCTTGT
GATTGACTTGGCATGTGACAGAGAGCCAGTATTTGAGAAGAAATTATATT
ACAATCAGCCCATTACATTCTTATGTGTCAATTTTAATTACCTTTTATGT
TAAACTATTTTTTGTTCGTTCTGTTTCTTATAATAAATGCTCAATAATAA
TCAAAAGCTGTTTGATGGCTTTGATGGTGATGACTAAAGATTTATAGTCA
CTAAGgattaaagaaaaatatagtTGTCATTCCTGTGGAATAAAGCACCC
AGCAAATGATGACGCCATCAACCGAAACAAACACTCTTAAGGGTACATGA
CGAGccttattttcattgttttcaaggaGCTGTTTTTCTACCTCTGTACA
CTTCTCTGCTTAGCCTACCCCTTCAACTTTGAACCTGCTTGTATGACATC
TCATTTTATTTCTTCCAGAGTACACACGCTTATCTTCTATGTTTTTGTAA
GATAATGTCAGCCTTCATTAAAGATTGGTTTGTTTCAAATTCTAGCTCGA
AGATTTCCACTCCATCAAATGCCAACTTTGGAAGTTGATGATAACGTTAT
CTGTCAATCAAGTGCTATCGGTCGATTTGTTGCTAGGGAACTTGGCTTCT
ATGGAAACAATTCTCTGGAACAGGCTGTGATCGATGAAGTTTGTGAAACA
TTGCATGATTTGGGTTTGGAACTGATCAAAATTATATTTGCCGGATACGA
CGATGAAACAAAGGTAGCTACTGAACTCTTATTTTGTGAATTAATAAAAT
GAATTTAGACTACCCTTGATAAATTCAAGATAGCTTTGTACAGCACcaga
ccccgagaatgtaggtaaAATTTAAATCAGATCTGAAAAATGCAGACGAG
TCctggaaaacccgagttatgaaAAAACCAAGTTTTGACGTCATAACTCA
GTTTTTTAAGGTACTCCCTAATTTTCCGAGTTAATTTTAACTCGGTCATT
TTAGGTACATCTCGAATTTTCGAGTTACATAACTTGGTTTTTTAAGGTGC
ATCTTAATTTTTCGAATGgaaaacccgcgaaattttctgtttgcatccat
tcgcgaaaattaatacccgcgaaatgcaattttttttacctCGCGAAAAT
AAATCTCCGCGAAAGTTTCTCGCCTTAAGGTAATAACAATATACTTCCAG
GCTTACAACTTTCGAACTTGGTGATTTTTGGCTTCGAAGGACATAAACGC
TAGCTCAGGAGAGGACTCGAGGATTGTTTACATCAGAGGAAACTCCGTTC
TATttgattgttaaaaaaattctatgacACAGCATTCGAAAAGTAGAATG
ATTGAGCTTTCCAAATATATGTAGCACTTGGGGTATTCAACCTCATTCta
tgcgtattatcagctttttgatgcttactgagaggtagtttgattcgcaa
acctctatagatatatctcCTATATAGGTTTACTTAATAGTGTACGGCTT
GCCTTCCCGCTATGGTGGCTCTTATGGTGGccgattttatcttttttggc
GAGTTACTACGGAAAGGGACGAGTTTTATATGGCGAgtcagaaaataata
aaaaaatatgttctgtCTTCACTTTGACTTTATATAACAGTAAGAGAGTC
TGTATTAAAAATGTTATGAAAAAGTGTAAAACAGTTTAATGAAAAAGCCT
AGTTATTTGAGTTCTATAAACATCAGCTTTCTGACTTCAATATTACATTT
TACAGGAAGTCAgagaaaagatcaaaacaaagaatcctttaaaggcctgt
ttccatcgatcgcgcgaACGTGCACGCTAGGCCAAAATTCTTAAAGTAGA
TTTGGCCGCACACTCCGCGCGATCAACGTttgatttccatcaaaaacatg
cacaatctgtatgtttacatttttttgtttactcagcagtttttctcttt
cttgattggttaaaaattatcaattgaGATGTGCGCTCCTGTacgctcaa
aaaagttgaaaattttcagcgtaGAAAAGAGCACAAAAGCGTACAAGAGC
GTACACTTTTGTGtacaagaaaatttaattcgTGACGTCAATAggctatt
ttaggaaattttgccctagcgtgcacgctcgcgcgatcgatggaaacagg
ccttaaAACGAAAGCACTCTGTTCTAAAAAAATAacttaataaatgaaaa
aatcctcTTGCATCCCTATAATAGTATTGAATAAGGTTTTTTTCCTCTTG
TTGAGGaaaagaaactaaaaaaaaaattgaaagaagaaaCCATTCTAAAA
TGGGTTTTGAGATCAGAGAAAGTTTGTACcttaaaaccattaaaaatgaa
aaaatattatacaAAATTTATTAAGTTTCCTTCCAATTTATAGATGTATC
ACCAAGACATCTAAGAACTATCAACTGAAATCATATCCTCTAATATTTGA
GCCTGACTGAGTCTGTCGGGTCTGCGAAAATCCAAAACAAAAACTCAATC
TCTCCAAAGTTCTCAAAACCGAcaaaaatatgagaaatattcCATCACAG
CTGCACGGTTTATGCTTTGCGGAATGATATACCAACAAGGCCAAACTAGA
GGTATAAACTCTTGTCCAGAGTCAGTTTTCAATGGCTAAAACTTGAGAAA
AAAACttgcaaaaaaattgactttttaaacTCCTTTTAAAGTAgctttga
aaacaagaaatctTCCAGAAAACCAAAGAATCTTGCTCTGTAACAAAGAA
CAAAGTAAATTTGACATGCCTGTTGCTTTATTGTAGGCTCCAAAGCGACA
ATACTTGTTGAAACTTGAAAGAATTTCAAGATCTTGTAACCAAAACAtca
gccaaaatcaaaacaaacaaaaaatcttaatttgaaTCATTATTTCATGC
CACTGAGACACAACTTTCCCTTAATGCATTCCATAGATACAACTGAACAT
AAATTTGCACATACAAAGCTGTTAACTCTAAATTATAacttccaaaaacc
aaaataaactccaaaaaagagaaattctcTACTTCGCTtcggcagccatg
ttgaattcAAAATGTGAACAATCAAGCGAGCCTGTATCAAACTAACACGT
GCATTTTTAATATCGGTATCAATAATGACAATATTTGTTATTAGTTTGTT
ACAGGCTATCAAAAATCTAAACCGTAACGGGGAGAGTTCCTTCACAAATT
CATCATCATAAGGACTCGCCAGCTAAAATAGCTTTTTCGCCGAAATTCGG
CGAAAAGCGGCATATTCTGGGAAAGAGGATCTACCGAGTATTAAgcagcc
tctataagaaacttttttcgctagaggatgagcagaagcctaactgagag
ggggaactcgcatcagccaacaccagggtattcaccggcgtcaatcagta
acgtaaataaagcctggaatataCGGGGACGAGGTATTTCCCTAAAGAAA
GTGACGCTGTGCAGGTCTATGACAGTATGTTTGACCAACTTGGTTGTGTA
AAAAAATTAACTCGGAAAATTAAGGTGCACctgaaaaaaccgagttatga
cgtcataactcgggttttctaGGCCTTGATGTAGATTtacatataaaaaa
acattgaacgttttcaacaaaattttgatagataAGCTAATTTTTTTGGC
CCTTGAatttgactcccattttcgttttAACCCGGTGTGAAAAGGtaata
aaaacttttgaattgaattctAATCTTAagtttcgcggatgagctcaacc
gtaAAATTTTAATCCCATTAAAAGAGCTGGTATTGTTCCTTTCTAGAAAA
CAAAATTGGAAGAATTTTACGCTTCAGAAAAATACAAGTTATTGATGGGA
TTCATTTCAAAAACCTTGAAGCGACACAACGATGGAAAAGCTTTTATCGC
AGGAGAAAAGGTATTATTGGGAAATTCAAAATCGCATGCCTTCTAATGTG
ACGAAGCGAAATTCGAGGGCTAAGAAAACTTGCGCGCGGGAAATGAACGT
TTAAGATTCTGGCCGCAACTACCCTGTCAGCAGGGCCCTATTCCGAGAGA
TTTCAGGAGATTTGAGGAcattaaaaatctatctttacaTTTTGGAGATG
ATGttattaccttattggaactaattttcgcgggttttaattttagcgtt
tttcgcggtttttcgtcgaaatcacgaaaatttgatcccgcgaaaaattt
tgagagtcgaaaaccgcgaaaattaattcccgcgaaatacaattttttcc
aattttatcgaaaaatttgaaaaatccctaggaaaatgaaagaaatttgt
ccaaaaaaaggcaaaaccgcgaaaattaaaacccgcaaaaattccagaat
ggaaaaaaccgcgaaaattaatacccgcgaaatgcaatttttcggatatt
ttttttcgaccgcgaaaattagttccaataaggtaatcTCGGGATTTCAC
TGGTCAAGTCTGTCTTGATTGGGCTGACCCTACAATTTTTTGCTACCTAT
TTCCGAATCGAGCGTGTGACCCAATAATTCTTTGAGCATGCTAGGAATGT
ACtctaaaaatattcatgatgaaattggcaaaaaaattaaCCATCGTCGA
ATATAGTTTGCTTactactcgtcaattttaattcacaagctttgtcacat
tgaattgacacgaatATGGAGCAAGATCAGTCTGACagagggaaagaaaa
acaaatttttgcttATTCAACACGAAATCGAACACAAATTAACATAGGAA
AGCCGGCCTGGTataaaacatgtgtctgatatgaaacaaaactgaaatct
taaatgatttttgttggacctaccgggaggtcctttaatttgaccgttgt
ccgttcgtctgttacaagcttttctcgggattggctcattagtttttttt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNgaaaattttttttcgtcgtaaaatacgaattttcttttttggggg
aaattctgttttaccattttcctgttagcagcttttctcgggatcggctt
attattttttttacattttttgcacaatgatacaaaaaagcaatgcctaa
aaagtgacggagcccgattttgaaaaaaaaattgggggtaaatttgggcc
aaaaactacttaaaaataaggttttttggacttggtgcaaaatttttgac
agtaagatagagtgcaaggtaccttaaaatgtggctgaagtaatttttct
cggaaaattttttttcgtcataaaattttcaaaaaaagacgaccaattta
cacaatgataaaagaaaataaatcagacatttttgcattgttctaagact
tattgtgtttgctcaataccaatagtaaaatgtagaacacctacttttat
ctgattttgatcaacaggtaggtccattcagcatgttgcttgttttcttT
TAAAGCTTTCCCTGGCTGATTTCAATCTGGTTGGAATcttgattttcatt
gaattaGATTTGAAGGATTTTCCAGAAATCTCAGCACTTCGTGAACGAGT
ACTTGGCGTTGAAAAGATCAAAAAATACATGGACACACAGAAAAAGTGAT
TCACTATTTGACACTATTAGTATCATCttttattaatttcatttttagaa
aatttttaatcGCACGTAATTTTCATTTCCAATTAATTTATCTCTAGACT
TTTTGAATTATAAAGGTATATTCATTTGTCAGCAAGTAAATTGTCCGAAT
TTGATATGGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064488-exon-scaffold_418-1491911889:139674..139983 | TCONS_00064488-exon-scaffold_418-1491911889:139674..139983 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1510915933:139674..139983 | TCONS_00064488-exon-scaffold_418-1510915933:139674..139983 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1575043694:139674..139983 | TCONS_00064488-exon-scaffold_418-1575043694:139674..139983 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1491911889:140519..140736 | TCONS_00064488-exon-scaffold_418-1491911889:140519..140736 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1510915933:140519..140736 | TCONS_00064488-exon-scaffold_418-1510915933:140519..140736 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1575043694:140519..140736 | TCONS_00064488-exon-scaffold_418-1575043694:140519..140736 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1491911889:143770..143883 | TCONS_00064488-exon-scaffold_418-1491911889:143770..143883 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1510915933:143770..143883 | TCONS_00064488-exon-scaffold_418-1510915933:143770..143883 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1575043694:143770..143883 | TCONS_00064488-exon-scaffold_418-1575043694:143770..143883 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1491911889:145879..146186 | TCONS_00064488-exon-scaffold_418-1491911889:145879..146186 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1510915933:145879..146186 | TCONS_00064488-exon-scaffold_418-1510915933:145879..146186 | Clytia hemisphaerica | exon |
| TCONS_00064488-exon-scaffold_418-1575043694:145879..146186 | TCONS_00064488-exon-scaffold_418-1575043694:145879..146186 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:139674..146186 + |
Blast
BLAST of TCONS_00064488 vs. Swiss-Prot (Human)
Match: GSTA2 (Glutathione S-transferase A2 OS=Homo sapiens GN=GSTA2 PE=1 SV=4) HSP 1 Score: 92.0485 bits (227), Expect = 9.641e-22 Identity = 61/202 (30.20%), Postives = 106/202 (52.48%), Query Frame = 1
Query: 181 KYTLNYFDTAGRAEAIRLMFHAAGVDFNDNRMSREEWLENKTDARRFPLHQMPTLEVDDNVICQSSAIGRFVARELGFYGNNSLEQAVIDEVCETLHDLGLELIKIIFAGYDDETKKTKLEEFYASEKYKLLMGFISKTLKRHNDGKAFIAGEKLSLADFNLVGILIFI-ELD---LKDFPEISALRERVLGVEKIKKYMDT 774
K L+Y + GR E+IR + AAGV+F + + E L+ + Q+P +E+D + Q+ AI ++A + YG + E+A+ID E + DLG ++ + F+ +++ K L + +Y K LK H G+ ++ G KLS AD +LV +L ++ ELD + FP + AL+ R+ + +KK++
Sbjct: 4 KPKLHYSNIRGRMESIRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKEKALIDMYIEGIADLGEMILLLPFSQPEEQDAKLALIQEKTKNRY---FPAFEKVLKSH--GQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQP 200
The following BLAST results are available for this feature:
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