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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064487 ID=TCONS_00064487|Name=TCONS_00064487|organism=Clytia hemisphaerica|type=transcript|length=770bp
aaaaatttgaaaattattttcttttttttggctttttcggaaaaaaatgg
GGGCGGCAGAAAAATTCCGAAAAAGTCGGATTATCGGGGAAATATTTCTG
CTGACGAGGCAATTCTTAATGGCGGCAAGGGCGTTTCTAATCGAACGTTA
AAAATCTCGTTTGCTTTTCTCGCTCGTGTGCCGGCGAGAAAGCCTTCCGA
CATATTGGATCTTTCTTTCACGTTTTCAAGCTGATTACAGCAAGCCATCG
AAATGGTCCACAGTAAAGTTTGGTACAGTCATCCTCGCACCTACGGTCCT
GGTTCCAGGAAATGccGTGTCTGCTCTAACCCTCATGGATTGATTCGCAA
ATATGGCTTAAACATTTGCCGTCAATGTTTCAAAGAATACGCCTCTGATA
TTGGATTCAGAAAGtaCAAGTAAATGTATTTGATGTACGAAAGCTGTTGG
ATTGGTCGAATGACGTGCAAATATGCTGTACATAAATGACACTTGATATT
TAGACCGAAATAACAGACTCTCGACGCAATTGTATCTGTTTCTTGTTCGA
TTCCAACATCTCCCTTTGCTGCTTCTAAAATATACTTCCTCTTTTAATGG
GCTGTGTATTTCGCTTGTGGCAAATATTGACACCCGTATCTATCCTCCTT
GGTGTTTCCTTGTAGCATTAAGGGGTAAAATTCTGGTACATCTTTCTCGT
CATCCATGATGATTTATCACATAATTAAGAGTTCTTATAGtatcgtgctt
ttgctgaaaagtgtgccgag Run BLAST on NCBI transcript from alignment at scaffold_418:127403..134962+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064487 ID=TCONS_00064487|Name=TCONS_00064487|organism=Clytia hemisphaerica|type=transcript|length=7560bp|location=Sequence derived from alignment at scaffold_418:127403..134962+ (Clytia hemisphaerica)
aaaaatttgaaaattattttcttttttttggctttttcggaaaaaaatgg
GGGCGGCAGAAAAATTCCGAAAAAGTCGGATTATCGGGGAAATATTTCTG
CTGACGAGGCAATTCTTAATGGCGGCAAGGGCGTTTCTAATCGAACGTTA
AAAATCTCGTTTGCTTTTCTCGCTCGTGTGCCGGCGAGAAAGCCTTCCGA
CATATTGGATCTTTCTTTCACGTTTTCAAGCTGATTACAGCAAGCCATCG
AAATGGTCCACAGTAAAGTTTGGTACAGTCATCCTCGCACCTACGGTCCT
GGTTCCAGGAAATGGTAAGACTTATTCTCAAGCTCCTTTTctttatttca
tgaaattttcccGGTTGAGACGTGATTAGTTACAACATttttaaaccaat
ttttttGTCAGCAATTTTGAATGGGGCATGATCTTCTTCTATCAGTGTTG
TACCTTTAGACGATTATCCGTTTAGTGTGGACATAAATGTAGCATCATTT
CTGTCCAGATTCATTTAAAACAATTGCAACACTAATGTGTATTGAAGAAT
TTCTTACTTTTAGTTTGTCATGAATACACCTTCCCGTAATGGGGATTCTG
TTGGACAAAATTCTCTCAAATTTTAGTAACTCTTCTATACCTTATTGAAG
ATGAACAAGTTTTATTTTGTCAGTTCACAAACTAAACAAATCAATCTCAA
GTTTTCTCATCGAGATTtatccaaaatgcataaaacataatgcatattaa
ataaaatattattacaaaaTGAAGCTTCTAAGTTACATATTTATTATTAA
GCTGATTGCCCAAACAAATTTATTTAATAATGCATATAGActttttcgcc
tttccatccgccatattgaattgtattcgaaaattatggtggccgaattg
ccgtggtgaaattaccttagaaagtatgcaaaacatatgcaaaaagaaag
tattaatgtaaaacttacatgcataattggcattatattaaagtgtaatc
ttgtagaagaaagcatgaaatgctgataaaaattgaggtataaaacatgc
cttgaaaatcttcctatcaaaagttatgggggttgaaagttttttgatga
cgtcatcataagccttttcaggcaaaacttaaaaaacctcgtaattttgg
tacaaattgaccaaattccatgttttatacatgaattcatattcattttt
actgctttcagtttgcgtgttttgaaagtttgatgtgtgtactccgtctt
ggtggaattttttaatggcatgaaaacagaatatgcaatgtctttaaNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaact
tgcatatgttttgcatattttccaactaaatccaaccacggctttttcgt
tcctctatttttgcatacaattcaagatggcagatggaaaggcgaaaaag
TCTATTgcatttgaaaaatctcaattttagaggctataataaggagaatt
tgaaagataatactttcaacaaaacaaatataccactttctgccagaaaa
taaagggtataaagctgtaaatttgaattttgaatgatgaagaaaatcca
tgatccactgaaaatgcttgtcacctttttgattttcatagatgtatttt
acagaacatagtatagtgtagaaaaaaacacgaaaatatctcctccttat
attacttttctaacttgaaaacgtaaattttatagcaaggcagcaatcaa
aaatatgttgtgTTCGGGTCTTCCGACCAAcagtttatttataagaaaac
ccGATTCGGAAAGTCAGTAAAATCGTCGGGTTTTTTTGGGCGCTGTTCGC
AGGTTCGGATCTTTCCTATAATGGCGGGCACAGGCGAACAAAGCAtgtct
ttgaatcattattttttgtttacttaacccacattgagtcccgtttAAGG
TTAACACGTGCGCGCGcacatttagtttggcaaattaaagatggcggcat
aagattctgttgattgccaacttgattcatcgggatttcctagatcttaa
aaatccaacaaaatttactaccgactgTCCGACCGACCGgttggatttga
agatgttttaagacccgaatggaacatatttttgattgccgcccaagatc
tttattctgagttttctcagagatctttgcgaacaattgctaataaattt
caacggatTTTCcatcttacaaagcattaaccatgtgaatactttttgtt
agataagccaatatccagccaatataaattaaagagcttcatgcgaaagc
tagatctaagaaaatagacttctacgaatttttttacatttgaatgctta
tgtgtttacctttttttgagaaagaagaaggggaaacctttctgatctgc
TGCATCTTCTTATTgtttatgctgacggaaaaccctttgttgttatgatt
cgaatgttttcatgatttgaaaagtaaatatcatgtctggggaaatcctt
ctgattggaatgtttacttaagAAATTCTTCTAAAAGAGGTATTCGTCGc
agttttagcctctacaaagggGAGTTataatataaaatcgttctgtaaat
tacacaatactattatgcatttgTACCTGCCGGTTTGGGAACGTGAACTA
CCAATGTCTGAACTTTTCAatctaacagattttttgaaattctgtaaaaa
agtTCCTAAATAGTTttactaccgtcaactgctctaacttgggacgattg
gtggAAACatggactgttgatatctgatCTGGCCTAGGACCCTCCCAGTG
CTCCGGTAACTTCCAAAGTTTTCCGTAGCAgttaaaaaaaacactatttt
tctctccaGACAGAAAGTTCCGGAGCTCTTCCGGTGCTTCcagagcaagt
gatttttaacacgttctaaaaaactgttttttttttttttatatatatta
caaaaaatattcaaaatattgatatGATATGATGGTTAAGCCattaaatg
aaattgaatttgtcacattGAAGCATCACTGGTTGAAatatcgaaaaaat
taaaaaacgtgCGGTCTCACTTCCATGAGTTGGctgagtttttaaaaata
tgcgCGTGCACAGTTAGTTTTCACATGATTAGCACAGCGAGCACTATCGT
AATTATATCGCATATATCTTTTGATTTGAAAGCCTACTCAATGCGTTTAC
TTTTTAATACGCCgctcattaactcaaatcaaatggctTTGGAGGTTTCg
ggaaatggtggccgaatggctgtcccatgttttgtcagatagtccgaagt
tagagcagttgactcTACTAATttaagtaaatgagataagataagataaa
ctTGAAAGCAACCAGTATTTATAACCTTTCATTCAATGCAAAAAGAAACA
GGGTTGCCACGTCTGCCAGAAATGTCTGAAATTAGGTTAAAGTCTGGAAA
ACGTCTGGAATTGGCATACCGGTCTAGAAAAGTCTGGAATTGGCATACGT
CTGGAAAAGAATAGAATTTGaaggaaatagtcctgaatgaaGCCTAGTAA
ACTTTCCGGTAATAGGAAACTTTTACCCTGGCATTTGaagtttctaaaaa
tttctGCTCGTTACACTCGCAACCAAATCTTTAAATCGTGTTCATTCTTA
AATTTCTCATTATGTTGTATTCCTCAATCTGGCCTTTCAAATGATGTTAA
GGAGAGACTGAAAACCTTCCTAATGGATAAAATGTCTGGAAAATATTggg
ttttttgtcaaaatatctgGNGTTAAGGAAAGACTGAAAACCTTCCTAAT
GGATAAAATGTCTGGAAAATATTgggttttttgtcaaaatatctgGAAAT
TCTCTGatattttcaggtaaaaaaatctggaaaaacatGGCTTTTTAGAC
TAAAAGTCTGGAATTTTGAACTTGGCAAACCTGTGGCAACCCTGGAAGTG
CTTTCCTTGCTGctatcttgttttagaatgacaTTATTTTTCATGCCAGT
TCACATGGAATTtgtttcatccaatcagattgcgtgatttcactttcgtt
ttctctagtccaataagatgCGAGATttgggtcacactactggctacagg
aactgaaagcaaacgATTAAGGCCAAtagttttggtttttctgaagggcA
AAAGGCTGGTACTATTTATTTAGatatgaacaaaaaagtaacttttttgg
gtgataattctcttacccccgtcccACGCCACCTTGATATGAGCAAGGAA
ACCATGTTGACCACctctactgaaaatttcagatcaaaataaacaaggaa
taaattcctgtaactcaaagaaaattggaaaaagctggttttgaccgttt
ctgatcctaaagtgatTTTTNGTCAAAATATCTGGAAATTCTCTGatatt
ttcaggtaaaaaatcCTAAAGTGATTTTTTGGTAATAGCTATGTAATTca
tttggatttctagaaagcttatcCATTGGTAGGGtggcttttcaaaaaaa
attgcctAAATCTATTTTGCCTTTCGCCATTTTACTCTACGCAAACAAAC
GTTAAGATCTATATGAATATTTTGACAATTAAGCTTGGTAATAATTAGAC
AGCTCACATTTCATCAGTTTTGATTTCAGCCTAATTATATGCCCAATAAT
TATTGACTGTCGATGactgtctttgaaaaatcaCCACAGTCAATAAAAAG
TATAGAAGCTAGATAATAAAACTTTTTGCTGTCATACATAATGCTGGCAA
AAGAATACAGACTAAAAGCTGCCATCAAAAAACAGCAACTCGGTAGCTTA
GTCGATTTATAAAGCTGTTAGTAAGTGGTTTTCTGTAGCGGACTTGTATT
GGACTAAGCAGACAGAAAGACTGTTACGGACTggttaaatttaaaaaagt
gtgATGCTTTGAGACCATCAgcttttcaggtacttaaaaTTGCTTGGGAA
GTCGCCTATCTTTAGGTGAATTCAAAAATAtcgaaacattttttgaaata
gttTAAAAGAGAGATGAGAACATTGTCACAGTCTATCAAcattttataag
gcattgttactCGCTTTGTTTACTTATGTATGTTTTTGCGTGCATATTTT
TATTTGGCTAGTTTGCAAAATGCTTAGAATTTTGCTGAAAATTACGAGAA
AGCTTCATGAATGGGTTTGGTAAAATAAGGGAACAGCCTTTCTGAATGTA
TTGATCTTTTGGATTTCAGTCATTGTGCTACTTCTAAAATATACTTTCCT
TTTTGATGGGCTGTGTATTTCGCTTGTGGCAAATATTGACAACTGAATCT
ATCCTCCTTGGTGTTTCCTTGTAGCATTAAGGGGTAAAATTCTGGGACAT
TTGAGTATCTCTCTTGGATAATACTTGGCAAGTTAGTGGATTTAAGGAAC
CTTAAGATATATCACTGTGCTGCTTCTAAAATATACTTCCCCTTTTGATG
GGCTGTGTATTTCGCTTGTGGCAAATATTGACAACTGAATCTATCCTCCT
TGGTGTTTCCTTGTAGCATTAAGGGGTAAAATTCTGGGACATTTGAGCAT
CTATCTTGAATAATACTTGGCAAGTTAGTGGATTTAAGGAACCTTAAGAT
ATATCACTGTGCTGCTTCTAAAATATACTTCCCCTTTTGAAGGGCTGTTT
ATTTCGCTTGTAGCAAACATTGACACCTGAATCTATCCTCTTTGGTGTTT
CCTTGTAGTATTAAGGGGTAAAATTCTAGGACATTTGAATATATCTCTTG
AATAATACTTAACAACAATGGTTCGGGTGTTTGCAAGATGGGCAAacagc
tttttaaagctatagATTGGGTCTTGGTGGATTTAAGGGACCTTAAGATA
TATCACTGTGCTGCTTCTAAAATATACTTCCCCTTTTGATGGGCTGTGTA
TTTCGCTTGTAGCAAACATTGACACCTGAATCTATCCTCCTTTATGTTTC
CTTATAGTGTGAAGGGGTAAAGTTCTGGGACATCTTGTTCCCTCTAATAG
AATagcatatatttattttattgtcTTGTCTTGTAATCTAATAGCGCTCC
GTTATGCAAatgtcataattattacttttcaaatttgtccGACATTCAAT
CCCATAATCCCTttcactttgatttcaaaatcgTGAGAGTTGTTACATTT
TCTTTGTTATAAGTGTGATTAATGTGCACAAGAAATTAACGCAATGAACG
ATGGGATTGAAACTCGGGCAAATAAAGAAAgtgatgtctatttttagatt
cactaCGGTGTGCTATTCAAagtgttttcatctttttcagccGTGTCTGC
TCTAACCCTCATGGATTGATTCGCAAATATGGCTTAAACATTTGCCGTCA
ATGTTTCAAAGAATACGCCTCTGATATTGGATTCAGAAAGGtaagatttt
caaaagtaaTTAATGATATGGATTTAATTGCTGCTTCTAAAATATACTTT
CCTATTTGATGGACTGTGTATTTCGCTTGTAGCAAATATCAACCCCAGAA
TCTATCCTCCATAAAGTTTCTTTATCGCATTTAAGGGGTAAAGTtctggg
acaagctggagtttttacaagctcttatttgatttagttggtcgttaaga
tgtaataaaagaatattattactttttctaaagaacgcgtcatctccatc
actttaaatgaccaattagtgaagtatcttgtaaaaactccaaggcatca
cAAAGTTCTGGAATATATATTTTCTAGTTATTTTTGGATTGAATTTCTCT
AAGGTCTATTTCCTtggttttttctttcaaaaatctttaaagcccTCGGT
TTGGAATAAAAACACCTTCAGATATTCGGACTGTGCTTTAGTTTTAGCTT
TTTTGATCAGATAGTTCTTTTGTATTTGATTTGGGAAATTTTTCAACTCT
ACTCTACGTCTGAAAGCAAGAGACATTTCAatcaaacttttgttttgatt
tgtacTTTTATTTTTCTGGTTACACTttcttaatttatttatttttcttt
tcagtaCAAGTAAATGTATTTGATGTACGAAAGCTGTTGGATTGGTCGAA
TGACGTGCAAATATGCTGTACATAAATGACACTTGATATTTAGACCGAAA
TAACAGACTCTCGACGCAATTGTATCTGTTTCTTGTTCGATTCCAACATC
TCCCTTTGCTGCTTCTAAAATATACTTCCTCTTTTAATGGGCTGTGTATT
TCGCTTGTGGCAAATATTGACACCCGTATCTATCCTCCTTGGTGTTTCCT
TGTAGCATTAAGGGGTAAAATTCTGGTACATCTTTCTCGTCATCCATGAT
GATTTATCACATAATTAAGAGTTCTTATAGtatcgtgcttttgctgaaaa
gtgtgccgag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064487-exon-scaffold_418-1491911889:127403..127716 | TCONS_00064487-exon-scaffold_418-1491911889:127403..127716 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1510915933:127403..127716 | TCONS_00064487-exon-scaffold_418-1510915933:127403..127716 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1575043694:127403..127716 | TCONS_00064487-exon-scaffold_418-1575043694:127403..127716 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1491911889:133893..133992 | TCONS_00064487-exon-scaffold_418-1491911889:133893..133992 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1510915933:133893..133992 | TCONS_00064487-exon-scaffold_418-1510915933:133893..133992 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1575043694:133893..133992 | TCONS_00064487-exon-scaffold_418-1575043694:133893..133992 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1491911889:134607..134962 | TCONS_00064487-exon-scaffold_418-1491911889:134607..134962 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1510915933:134607..134962 | TCONS_00064487-exon-scaffold_418-1510915933:134607..134962 | Clytia hemisphaerica | exon |
| TCONS_00064487-exon-scaffold_418-1575043694:134607..134962 | TCONS_00064487-exon-scaffold_418-1575043694:134607..134962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:127403..134962 + |
Blast
BLAST of TCONS_00064487 vs. Swiss-Prot (Human)
Match: RS29 (40S ribosomal protein S29 OS=Homo sapiens GN=RPS29 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 1.223e-21 Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1
Query: 253 MVHSKVWYSHPRTYGPGSRKCRVCSNPHGLIRKYGLNICRQCFKEYASDIGFRK 414
M H ++++SHPR +G GSR CRVCSN HGLIRKYGLN+CRQCF++YA DIGF K
Sbjct: 1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 54
The following BLAST results are available for this feature:
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