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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064485 ID=TCONS_00064485|Name=TCONS_00064485|organism=Clytia hemisphaerica|type=transcript|length=2327bpRun BLAST on NCBI protein sequence of TCONS_00064485-protein >TCONS_00064485-protein ID=TCONS_00064485-protein|Name=TCONS_00064485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp MSTCERKVPQDRFHIAYQIFYLLGCTTLLPWNFFITANAYFSAKLKNKPNRun BLAST on NCBI transcript from alignment at scaffold_418:102383..112058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064485 ID=TCONS_00064485|Name=TCONS_00064485|organism=Clytia hemisphaerica|type=transcript|length=9676bp|location=Sequence derived from alignment at scaffold_418:102383..112058+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_418:102383..112058+ >TCONS_00064485 ID=TCONS_00064485|Name=TCONS_00064485|organism=Clytia hemisphaerica|type=CDS|length=16704bp|location=Sequence derived from alignment at scaffold_418:102383..112058+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064485 vs. Swiss-Prot (Human)
Match: S29A2 (Equilibrative nucleoside transporter 2 OS=Homo sapiens GN=SLC29A2 PE=1 SV=3) HSP 1 Score: 182.956 bits (463), Expect = 4.997e-50 Identity = 154/465 (33.12%), Postives = 232/465 (49.89%), Query Frame = 1
Query: 493 KVPQDRFHIAYQIFYLLGCTTLLPWNFFITANAYFSAKLKNKPNLES--------------TFQNYFSVGSMGPNMFIMILNVFLFHKCSRFVRMVVSIFMLLVSFTITASFVLVNTSTWTEEFFIATMIILVLISGFGAMLQGALFGLAGMMPPRYIQAVMAGQGLGGFFVCIVSILSSVGGSKITDSSFGYFCTGIFAMIISLLAYVYLERLPIVKYYTNITKGVCFCTCECENECHLXXXXXXXXXXXXXXXXXXXCHLNSXXXXXXXXXXXXXXXXXXXXXXXXXKDINYLRIIKKIKCMMLTVYITFLVTLSVFPSLTARIESTWADQNKWTESLFVLVGCFLTYNLFDYIGKSAVSFFQKPTNERPWXXXXXXXXXXXFIPLFLFCNVQPRISNIPVAFSHDSLPIIFMALFAFTGGYLGSLPFIYGPSMVEPHEQEITATLIVFSLVAGLTSGAALSF 1845
P+D +H+ F++LG TLLPWNFFITA YF A+L N + F N+ ++ S P + +LN FL+ VR++ S+ +L+ F +TA+ V V+ S FF TM + I+ F A+LQG+LFG G MP Y ++GQGL G F + +LS G S+ GYF T +++S++ Y+ L L + Y K E E + L + N + + + +K+ + + + +KI L + + F VTLSVFP++TA + S+ KW++ F + CFL +N+ D++G+S S+F P +E LL +L LR LF+PLF+ C+V P+ S +P+ F D+ I FM LFA + GYL SL P V PHE+E+ L+ F L GL+ GA+LSF
Sbjct: 5 DAPRDSYHLVGISFFILGLGTLLPWNFFITAIPYFQARLAGAGNSTARILSTNHTGPEDAFNFNNWVTLLSQLPLLLFTLLNSFLYQCVPETVRILGSLLAILLLFALTAALVKVDMSP--GPFFSITMASVCFINSFSAVLQGSLFGQLGTMPSTYSTLFLSGQGLAGIFAALAMLLSMASGVDAETSALGYFITPCVGILMSIVCYLSLPHLKFAR-YYLANKSSQAQAQELETKAELLQSDENGIPS------------SPQKVALTLDLDLEKEPESEPDEPQKPGKPSVFTVFQKIWLTALCLVLVFTVTLSVFPAITAMVTSS-TSPGKWSQ-FFNPICCFLLFNIMDWLGRSLTSYFLWP-DEDSRLLPLLVCLRFLFVPLFMLCHV-PQRSRLPILFPQDAYFITFMLLFAVSNGYLVSLTMCLAPRQVLPHEREVAGALMTFFLALGLSCGASLSF 450 The following BLAST results are available for this feature:
BLAST of TCONS_00064485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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