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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064481 ID=TCONS_00064481|Name=TCONS_00064481|organism=Clytia hemisphaerica|type=transcript|length=546bp
AGGAAGGCAAACGTCTTGGACAAGCACTTGGagataaagatattttagtt
ATGGGTAACCATGGTTTACTGACCGTTGGTGAAACTATACCCATGGCGTA
CGATCGTCATTATTATTTTGAGCGCGCGGCCGAAACTCAAGTACTGGCGT
ATCAAACTGGAAAACCTCTAAGTTACCTACCGGACGACGTAGCCAAGCGG
ACGGAGGAAGGAATTTACGCTTACGTCACAAAGGAAGTTGTCGCCAAACA
TTTGAACGCATTGAGAAATGTTTTCATGAAAGAAGATCCCACTTTTATTG
ACCCTAAGAATTCGGAATATATGGAGTACGTTGGTTGATCTGGAAGGATG
ATTTCCTAACTGACATACAACATTTTTCGACGTTAATTTAACGTTgcatg
gacgttgtgaacattacataaacgttgaaacaagaTTGTATTACAGCtgg
ttttctgaaattttatacttttttaacAGACGGGGAAGGTCTTTGGAACA
GTTGGGGCTGATTTGATTAAatcaatttttgcatttttggaaTTGG Run BLAST on NCBI protein sequence of TCONS_00064481-protein >TCONS_00064481-protein ID=TCONS_00064481-protein|Name=TCONS_00064481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
EGKRLGQALGDKDILVMGNHGLLTVGETIPMAYDRHYYFERAAETQVLAY
QTGKPLSYLPDDVAKRTEEGIYAYVTKEVVAKHLNALRNVFMKEDPTFID
PKNSEYMEYVG Run BLAST on NCBI transcript from alignment at scaffold_418:81638..82740+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064481 ID=TCONS_00064481|Name=TCONS_00064481|organism=Clytia hemisphaerica|type=transcript|length=1103bp|location=Sequence derived from alignment at scaffold_418:81638..82740+ (Clytia hemisphaerica)
AGGAAGGCAAACGTCTTGGACAAGCACTTGGagataaagatattttagtt
ATGGGTAACCATGGTTTACTGACCGTTGGTGAAACTATACCCATGGCGTA
CGATCGTCATTATTATTTTGAGCGCGCGGCCGAAACTCAAGTACTGGCGT
ATCAAACTGGAAAACCTCTAAGGTaagttttttgtttcaaaataacaaat
acATAGGTAGATTGAATAAAAACAGGCTGACATCAGACATCATCAGGGGG
TCCGGAATGGAAAACGCCCGGGGAAAATATCTGCTAATatgaggtgtccg
ccttttaaaGTGNTCTCAATATCTTGTCTTGACGATGAAGATAAGTGACC
CTCAGTTTTCTAGATATATTTACCTTGACGAtggaatatttaaaaaaata
acctGGATAAAGCAACGCATAGGAAACATAAAAATCCAAGAATTCTCTTA
TACAGCTCAACCCTTAGCAGTGCGTCGAGAAAAGTTTACCTTGTATTTTT
GTTACCAGTCTCCTAAAAACATGATCGCGCTGGAGTTGATAAAGTGTATA
ATGAACATTTATCAAACTTAGTGACAGATCCAAAAACCAAAACTCAGAAC
TTGATctgtacccagctggcacacaacgttgtttcaacgtttatctaacg
ttcacaacgtccatataacgttatatgaatgttgaaacaacgttgtgtgc
cagctgggaatttATCATCTTCATTACAGTTACCTACCGGACGACGTAGC
CAAGCGGACGGAGGAAGGAATTTACGCTTACGTCACAAAGGAAGTTGTCG
CCAAACATTTGAACGCATTGAGAAATGTTTTCATGAAAGAAGATCCCACT
TTTATTGACCCTAAGAATTCGGAATATATGGAGTACGTTGGTTGATCTGG
AAGGATGATTTCCTAACTGACATACAACATTTTTCGACGTTAATTTAACG
TTgcatggacgttgtgaacattacataaacgttgaaacaagaTTGTATTA
CAGCtggttttctgaaattttatacttttttaacAGACGGGGAAGGTCTT
TGGAACAGTTGGGGCTGATTTGATTAAatcaatttttgcatttttggaaT
TGG Coding sequence (CDS) from alignment at scaffold_418:81638..82740+ >TCONS_00064481 ID=TCONS_00064481|Name=TCONS_00064481|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_418:81638..82740+ (Clytia hemisphaerica)
GAAGGCAAACGTCTTGGACAAGCACTTGGagataaagatattttagttAT
GGGTAACCATGGTTTACTGACCGTTGGTGAAACTATACCCATGGCGTACG
ATCGTCATTATTATTTTGAGCGCGCGGCCGAAACTCAAGTACTGGCGTAT
CAAACTGGAAAACCTCTAAGTTACCTACCGGACGACGTAGCCAAGCGGAC
GGAGGAAGGAATTTACGCTTACGTCACAAAGGAAGTTGTCGCCAAACATT
TGAACGCATTGAGAAATGTTTTCATGAAAGAAGATCCCACTTTTATTGAC
CCTAAGAATTCGGAATATATGGAGTACGTTGGTTGAGAAGGCAAACGTCT
TGGACAAGCACTTGGagataaagatattttagttATGGGTAACCATGGTT
TACTGACCGTTGGTGAAACTATACCCATGGCGTACGATCGTCATTATTAT
TTTGAGCGCGCGGCCGAAACTCAAGTACTGGCGTATCAAACTGGAAAACC
TCTAAGTTACCTACCGGACGACGTAGCCAAGCGGACGGAGGAAGGAATTT
ACGCTTACGTCACAAAGGAAGTTGTCGCCAAACATTTGAACGCATTGAGA
AATGTTTTCATGAAAGAAGATCCCACTTTTATTGACCCTAAGAATTCGGA
ATATATGGAGTACGTTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064481-exon-scaffold_418-1491911889:81638..81809 | TCONS_00064481-exon-scaffold_418-1491911889:81638..81809 | Clytia hemisphaerica | exon |
| TCONS_00064481-exon-scaffold_418-1510915933:81638..81809 | TCONS_00064481-exon-scaffold_418-1510915933:81638..81809 | Clytia hemisphaerica | exon |
| TCONS_00064481-exon-scaffold_418-1575043694:81638..81809 | TCONS_00064481-exon-scaffold_418-1575043694:81638..81809 | Clytia hemisphaerica | exon |
| TCONS_00064481-exon-scaffold_418-1491911889:82367..82740 | TCONS_00064481-exon-scaffold_418-1491911889:82367..82740 | Clytia hemisphaerica | exon |
| TCONS_00064481-exon-scaffold_418-1510915933:82367..82740 | TCONS_00064481-exon-scaffold_418-1510915933:82367..82740 | Clytia hemisphaerica | exon |
| TCONS_00064481-exon-scaffold_418-1575043694:82367..82740 | TCONS_00064481-exon-scaffold_418-1575043694:82367..82740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_418 | supercontig | scaffold_418:81638..82740 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001303 | Aldolase_II/adducin_N |
Blast
The following BLAST results are available for this feature:
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