TCONS_00064478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064478
Unique NameTCONS_00064478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064478 ID=TCONS_00064478|Name=TCONS_00064478|organism=Clytia hemisphaerica|type=transcript|length=523bp
AGTCGTGCAATCGCTATTTCAATAATTTAAAGAGAGGCATCAAGGAGAAA
GAAACCCTCACAGAAGAAGAATTGAaactcaaaattgtgaaaaatcgtCG
ATATGGTAGACGAAATAAGGAGGCAATACGTCGACAAAAGTTGGCTGCCG
CTTTCTTTGACGACCTcgacgaagaagaaaaggagATGATAAATTCTATA
TCTGGAGATGTGATCACGGACGAGGATTCGGACGTCGACGACAAAAGCAT
AAAAACTCTCACCCGTCGAAAACTTACCTGGCGcagtgaaaagtttgaaa
atcttttaaaacggATCGAGCCGGAGCGGAGTGGCAAATTATTGTATCGT
GTGGATGGTCCACCGTCGACGCGAGAGCCGTCGGAAAATTTACCACGCAA
CTTTATTCAGCCAATCGAAGAGACTGcctcgtaaagttttttatttaaca
gCATGGATTAACACATGTATTTCTTTTGTATATAACTAATATTTATAACA
TCAAATCATTATTATATTTTAAC
Run BLAST on NCBI

protein sequence of TCONS_00064478-protein

>TCONS_00064478-protein ID=TCONS_00064478-protein|Name=TCONS_00064478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
SCNRYFNNLKRGIKEKETLTEEELKLKIVKNRRYGRRNKEAIRRQKLAAA
FFDDLDEEEKEMINSISGDVITDEDSDVDDKSIKTLTRRKLTWRSEKFEN
LLKRIEPERSGKLLYRVDGPPSTREPSENLPRNFIQPIEETAS
Run BLAST on NCBI

transcript from alignment at scaffold_418:31345..32072+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064478 ID=TCONS_00064478|Name=TCONS_00064478|organism=Clytia hemisphaerica|type=transcript|length=728bp|location=Sequence derived from alignment at scaffold_418:31345..32072+ (Clytia hemisphaerica)
AGTCGTGCAATCGCTATTTCAATAATTTAAAGAGAGGCATCAAGGAGAAA
GAAACCCTCACAGAAGAAGAATTGAaactcaaaattgtgaaaaatcgtCG
ATATGGTAGACGAAATAAGGTAAACATTAATATAACATTCCCTAATTGTT
AATTGCATACCAGGgtgattattttcattttcccgAGTATATTACTCAAA
GTGTAGAAAGTGAATTAATGCAGTCAAAAGCAACGCTGAGTCTGCCATGT
AGCTGTCCTCTTTGGGTAAACATTTTAACGGGTCAACTacttatgtattt
tttttttttttttttcataactaGGAGGCAATACGTCGACAAAAGTTGGC
TGCCGCTTTCTTTGACGACCTcgacgaagaagaaaaggagATGATAAATT
CTATATCTGGAGATGTGATCACGGACGAGGATTCGGACGTCGACGACAAA
AGCATAAAAACTCTCACCCGTCGAAAACTTACCTGGCGcagtgaaaagtt
tgaaaatcttttaaaacggATCGAGCCGGAGCGGAGTGGCAAATTATTGT
ATCGTGTGGATGGTCCACCGTCGACGCGAGAGCCGTCGGAAAATTTACCA
CGCAACTTTATTCAGCCAATCGAAGAGACTGcctcgtaaagttttttatt
taacagCATGGATTAACACATGTATTTCTTTTGTATATAACTAATATTTA
TAACATCAAATCATTATTATATTTTAAC

Coding sequence (CDS) from alignment at scaffold_418:31345..32072+

>TCONS_00064478 ID=TCONS_00064478|Name=TCONS_00064478|organism=Clytia hemisphaerica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_418:31345..32072+ (Clytia hemisphaerica)
TCGTGCAATCGCTATTTCAATAATTTAAAGAGAGGCATCAAGGAGAAAGA
AACCCTCACAGAAGAAGAATTGAaactcaaaattgtgaaaaatcgtCGAT
ATGGTAGACGAAATAAGGAGGCAATACGTCGACAAAAGTTGGCTGCCGCT
TTCTTTGACGACCTcgacgaagaagaaaaggagATGATAAATTCTATATC
TGGAGATGTGATCACGGACGAGGATTCGGACGTCGACGACAAAAGCATAA
AAACTCTCACCCGTCGAAAACTTACCTGGCGcagtgaaaagtttgaaaat
cttttaaaacggATCGAGCCGGAGCGGAGTGGCAAATTATTGTATCGTGT
GGATGGTCCACCGTCGACGCGAGAGCCGTCGGAAAATTTACCACGCAACT
TTATTCAGCCAATCGAAGAGACTGcctcgtaaTCGTGCAATCGCTATTTC
AATAATTTAAAGAGAGGCATCAAGGAGAAAGAAACCCTCACAGAAGAAGA
ATTGAaactcaaaattgtgaaaaatcgtCGATATGGTAGACGAAATAAGG
AGGCAATACGTCGACAAAAGTTGGCTGCCGCTTTCTTTGACGACCTcgac
gaagaagaaaaggagATGATAAATTCTATATCTGGAGATGTGATCACGGA
CGAGGATTCGGACGTCGACGACAAAAGCATAAAAACTCTCACCCGTCGAA
AACTTACCTGGCGcagtgaaaagtttgaaaatcttttaaaacggATCGAG
CCGGAGCGGAGTGGCAAATTATTGTATCGTGTGGATGGTCCACCGTCGAC
GCGAGAGCCGTCGGAAAATTTACCACGCAACTTTATTCAGCCAATCGAAG
AGACTGcctcgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040440XLOC_040440Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064478-proteinTCONS_00064478-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064478-exon-scaffold_418-1491911889:31345..31463TCONS_00064478-exon-scaffold_418-1491911889:31345..31463Clytia hemisphaericaexon
TCONS_00064478-exon-scaffold_418-1510915933:31345..31463TCONS_00064478-exon-scaffold_418-1510915933:31345..31463Clytia hemisphaericaexon
TCONS_00064478-exon-scaffold_418-1575043694:31345..31463TCONS_00064478-exon-scaffold_418-1575043694:31345..31463Clytia hemisphaericaexon
TCONS_00064478-exon-scaffold_418-1491911889:31669..32072TCONS_00064478-exon-scaffold_418-1491911889:31669..32072Clytia hemisphaericaexon
TCONS_00064478-exon-scaffold_418-1510915933:31669..32072TCONS_00064478-exon-scaffold_418-1510915933:31669..32072Clytia hemisphaericaexon
TCONS_00064478-exon-scaffold_418-1575043694:31669..32072TCONS_00064478-exon-scaffold_418-1575043694:31669..32072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_418supercontigscaffold_418:31345..32072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.24285	1.54251	0	0.750952	21.7887	16.8565	9.44202	10.3354	5.52227	3.77391	2.51835	4.81589	4.73406	8.42805	8.98204	8.74405	22.3073	13.1274	6.60589	6.28417	14.5291	19.3422	3.62734	5.77112	0.121309	0.21653	7.59141	5.62163	2.63353	1.91654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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