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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064477 ID=TCONS_00064477|Name=TCONS_00064477|organism=Clytia hemisphaerica|type=transcript|length=947bp
CTTGGAAACTCTGTGGCCTTTTTtgcatttgaaaattcttgggATTAAAT
AACATTGTTTGTCCTTTGAAATATCAAGTTCAGCTATTTGCTAAAATTCT
TCGAAGATATTAACTGGGCAGTACTTCGAGTTCAATCTAGCAATTGGAAT
TTTGTTACCTTCATGATGTCGGTCATTCTTTGACTTTTCTACAATAATTT
CTAACCTGTCGGGTTTGATGCGCACGTGTCCGAGTTTCAATTCCAGAATT
TCCTCTACTCTCATGAATCCGGTGAAACCTATCGTCGCAAGTACTAAGAA
TCGAAGATTTGGAATTGTGTGGTCTTCTCTGTATTTGTCGACTAGCTTTC
TGATTACTTCTGGTTCTAATGGTTCCATTTTTTCCTTTGGGGTTGCTGTG
AGTCTTGAACATCCTTCAAGGACTGACTGTAGGAATGGGTCTTCGGTTGG
AGAATTTAATCCTGCCATAATATGAGCCCATCGGATACCGTAGAATGCGG
AAATGACTGATCCTTTCGTTGATCTGGTGATTCTCAGGTGGTTAAGATAA
AGAGCGACGTCGAGTGGTTTTGCTGGTATTGCTTGAATTTCTGGTTTTGT
TGATGTCCATTCTGTCCATTTTTGCCAGGCTTTGGAGTATTTATCGTTTG
TTGATTTTGCGTGTGAAGCTTAGAGCACCGTCGTTAGCGAGTATTTGAGG
TTGTTAAGTTCTGTGTTCTCAAATGACTGATTCCACCAGGATTTTGTGTC
TAAAACGAAAATCTCTAAGGACATGAAAAACTGTTACACAATCTAAAGAT
GCTCGTATCTTTTAATTCTAGTTAGAAACTCGTATTAAGTTCGATTTGAT
TTAATGTTCGATGTTACCATACTACGGTACCTAGGTCGTATTTGCCTCTT
CATGCTCTCAGCTTTCCATACTACGGAACTTAGGCCTTCTTGCCTTT Run BLAST on NCBI protein sequence of TCONS_00064477-protein >TCONS_00064477-protein ID=TCONS_00064477-protein|Name=TCONS_00064477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MAGLNSPTEDPFLQSVLEGCSRLTATPKEKMEPLEPEVIRKLVDKYREDH
TIPNLRFLVLATIGFTGFMRVEEILELKLGHVRIKPDRLEIIVEKSKNDR
HHEGNKIPIARLNSKYCPVNIFEEF Run BLAST on NCBI transcript from alignment at scaffold_417:47473..48419 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064477 ID=TCONS_00064477|Name=TCONS_00064477|organism=Clytia hemisphaerica|type=transcript|length=947bp|location=Sequence derived from alignment at scaffold_417:47473..48419 (Clytia hemisphaerica)
AAAGGCAAGAAGGCCTAAGTTCCGTAGTATGGAAAGCTGAGAGCATGAAG
AGGCAAATACGACCTAGGTACCGTAGTATGGTAACATCGAACATTAAATC
AAATCGAACTTAATACGAGTTTCTAACTAGAATTAAAAGATACGAGCATC
TTTAGATTGTGTAACAGTTTTTCATGTCCTTAGAGATTTTCGTTTTAGAC
ACAAAATCCTGGTGGAATCAGTCATTTGAGAACACAGAACTTAACAACCT
CAAATACTCGCTAACGACGGTGCTCTAAGCTTCACACGCAAAATCAACAA
ACGATAAATACTCCAAAGCCTGGCAAAAATGGACAGAATGGACATCAACA
AAACCAGAAATTCAAGCAATACCAGCAAAACCACTCGACGTCGCTCTTTA
TCTTAACCACCTGAGAATCACCAGATCAACGAAAGGATCAGTCATTTCCG
CATTCTACGGTATCCGATGGGCTCATATTATGGCAGGATTAAATTCTCCA
ACCGAAGACCCATTCCTACAGTCAGTCCTTGAAGGATGTTCAAGACTCAC
AGCAACCCCAAAGGAAAAAATGGAACCATTAGAACCAGAAGTAATCAGAA
AGCTAGTCGACAAATACAGAGAAGACCACACAATTCCAAATCTTCGATTC
TTAGTACTTGCGACGATAGGTTTCACCGGATTCATGAGAGTAGAGGAAAT
TCTGGAATTGAAACTCGGACACGTGCGCATCAAACCCGACAGGTTAGAAA
TTATTGTAGAAAAGTCAAAGAATGACCGACATCATGAAGGTAACAAAATT
CCAATTGCTAGATTGAACTCGAAGTACTGCCCAGTTAATATCTTCGAAGA
ATTTTAGCAAATAGCTGAACTTGATATTTCAAAGGACAAACAATGTTATT
TAATcccaagaattttcaaatgcaAAAAAGGCCACAGAGTTTCCAAG Coding sequence (CDS) from alignment at scaffold_417:47473..48419 >TCONS_00064477 ID=TCONS_00064477|Name=TCONS_00064477|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_417:47473..48419 (Clytia hemisphaerica)
ATGGCAGGATTAAATTCTCCAACCGAAGACCCATTCCTACAGTCAGTCCT
TGAAGGATGTTCAAGACTCACAGCAACCCCAAAGGAAAAAATGGAACCAT
TAGAACCAGAAGTAATCAGAAAGCTAGTCGACAAATACAGAGAAGACCAC
ACAATTCCAAATCTTCGATTCTTAGTACTTGCGACGATAGGTTTCACCGG
ATTCATGAGAGTAGAGGAAATTCTGGAATTGAAACTCGGACACGTGCGCA
TCAAACCCGACAGGTTAGAAATTATTGTAGAAAAGTCAAAGAATGACCGA
CATCATGAAGGTAACAAAATTCCAATTGCTAGATTGAACTCGAAGTACTG
CCCAGTTAATATCTTCGAAGAATTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064477-exon-scaffold_417-1491911889:47473..48419 | TCONS_00064477-exon-scaffold_417-1491911889:47473..48419 | Clytia hemisphaerica | exon |
| TCONS_00064477-exon-scaffold_417-1510915933:47473..48419 | TCONS_00064477-exon-scaffold_417-1510915933:47473..48419 | Clytia hemisphaerica | exon |
| TCONS_00064477-exon-scaffold_417-1575043694:47473..48419 | TCONS_00064477-exon-scaffold_417-1575043694:47473..48419 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_417 | supercontig | scaffold_417:47473..48419 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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