TCONS_00064474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064474
Unique NameTCONS_00064474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length774

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=transcript|length=774bp
AGTTAAGCCTTTTCTGAGAAAATGTGAATTCCAacagtccaaaaaaaaaa
taaacaaaacgacAAAATGGCGTCAAATCATGATATGTATGATCAGAATG
GTAGTGCAAATGGTGATATTATTGTCTTTGGTTTTCAAAAGattgaaGAT
TTTCTACAAAAACGGGGTTGTTCGCATTTGCTCCAACATTTCGTACTTCA
GAAAATAGACGACACTGTTGCCTCATTCTGTGATGACAAAACCCTACTCG
ATTTGGGTTTATTGTATGGTGATTTAATTTCATTCAAACAAACATTTCGC
ACTTCAAATGACAATGGCACAAGCTCCCAAATTTTGCACTACAGAGAAAG
GGCTCAGCAGTTGAGTTCCAAACTGAAACGAACCCATACAGAACGAATAA
GCACAACCAACCGACCAGTGACCGTTAAAAGTCACTTCGAAATCCAATTT
GGCATCAAATgtctcgagaaaaaaaaatatgttcatAAACTGAACAAAAC
AATGACTTTTCAAGTGGTAAGGTCAGCCACATATGATCAACTTCATAAAA
TATGTAGACAGAAATTCAAAATTGCAGATAGTATTGAATCATTTATTGCT
ACATAtactggaaagaaaatagaagaGTCCTTTAAAGATTTGCAAGACTA
TCATGAGAAACATgctaaagagaaaaaaaaagtgcTCAATTTATATTTAT
ATGTGCCCGTGGTTTATGCAAGACTCGAGTTTAAGTGGGCATTAGAACAA
AATGTTGAAAGCTCGTCATCAGAT
Run BLAST on NCBI

protein sequence of TCONS_00064474-protein

>TCONS_00064474-protein ID=TCONS_00064474-protein|Name=TCONS_00064474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MASNHDMYDQNGSANGDIIVFGFQKIEDFLQKRGCSHLLQHFVLQKIDDT
VASFCDDKTLLDLGLLYGDLISFKQTFRTSNDNGTSSQILHYRERAQQLS
SKLKRTHTERISTTNRPVTVKSHFEIQFGIKCLEKKKYVHKLNKTMTFQV
VRSATYDQLHKICRQKFKIADSIESFIATYTGKKIEESFKDLQDYHEKHA
KEKKKVLNLYLYVPVVYARLEFKWALEQNVESSSSD
Run BLAST on NCBI

transcript from alignment at scaffold_417:50310..51595-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_417:50310..51595- (Clytia hemisphaerica)
AGTTAAGCCTTTTCTGAGAAAATGTGAATTCCAACAGTCCAAAAAAAAAA
TAAACAAAACGACAAAATGGCGTCAAATCATGATATGTATGATCAGAATG
GTAGTGCAAATGGTGATATTATTGTCTTTGGTTTTCAAAAGGTAAGTTTT
ATTTGAATAAATATCTGTATTTTTTTCTTTTTAGCCTGTAATTTTTACCA
GGGGCAAGGTTGCCTGCTGCCTGGTTTGAAAAAGACTCATTTATCCAGGG
CGATGTCAATCAATCAAAGTTGATCGAATCTAATCGAATGATTAAGGTGA
TACATTGCACTACTCTGTCATACTTTTCACTCACCTTATTTCCTTTGTTT
TGCTCATGAAATTTTGATCTTTAGATTGATCTCATGTTTACAGATTGAGA
CATATGTGATCAATTACAAATCAAAACATAACAAAAATTCACTTTTGTTT
TTAAAATGTACATATCGCTATTCAGTAAAATACACAGTGCAAAGTATGGC
AAAGTAGTGTAATTTATCACCTTTCGACGGTATTCAACAAATTGGATGAA
TATATACCTTGAACGTACAATGGCTTTAACAAAAAATCACAAAGTAAGTA
AATAAGTATATTATAAACCTCGATATTCACACATTTCCTCTTTTTTTTTT
TAGATTGAAGATTTTCTACAAAAACGGGGTTGTTCGCATTTGCTCCAACA
TTTCGTACTTCAGAAAATAGACGACACTGTTGCCTCATTCTGTGATGACA
AAACCCTACTCGATTTGGGTTTATTGTATGGTGATTTAATTTCATTCAAA
CAAACATTTCGCACTTCAAATGACAATGGCACAAGCTCCCAAATTTTGCA
CTACAGAGAAAGGGCTCAGCAGTTGAGTTCCAAACTGAAACGAACCCATA
CAGAACGAATAAGCACAACCAACCGACCAGTGACCGTTAAAAGTCACTTC
GAAATCCAATTTGGCATCAAATGTCTCGAGAAAAAAAAATATGTTCATAA
ACTGAACAAAACAATGACTTTTCAAGTGGTAAGGTCAGCCACATATGATC
AACTTCATAAAATATGTAGACAGAAATTCAAAATTGCAGATAGTATTGAA
TCATTTATTGCTACATATACTGGAAAGAAAATAGAAGAGTCCTTTAAAGA
TTTGCAAGACTATCATGAGAAACATGCTAAAGAGAAAAAAAAAGTGCTCA
ATTTATATTTATATGTGCCCGTGGTTTATGCAAGACTCGAGTTTAAGTGG
GCATTAGAACAAAATGTTGAAAGCTCGTCATCAGAT

Coding sequence (CDS) from alignment at scaffold_417:50310..51595-

>TCONS_00064474 ID=TCONS_00064474|Name=TCONS_00064474|organism=Clytia hemisphaerica|type=CDS|length=1416bp|location=Sequence derived from alignment at scaffold_417:50310..51595- (Clytia hemisphaerica)
ATTGAAGATTTTCTACAAAAACGGGGTTGTTCGCATTTGCTCCAACATTT
CGTACTTCAGAAAATAGACGACACTGTTGCCTCATTCTGTGATGACAAAA
CCCTACTCGATTTGGGTTTATTGTATGGTGATTTAATTTCATTCAAACAA
ACATTTCGCACTTCAAATGACAATGGCACAAGCTCCCAAATTTTGCACTA
CAGAGAAAGGGCTCAGCAGTTGAGTTCCAAACTGAAACGAACCCATACAG
AACGAATAAGCACAACCAACCGACCAGTGACCGTTAAAAGTCACTTCGAA
ATCCAATTTGGCATCAAATGTCTCGAGAAAAAAAAATATGTTCATAAACT
GAACAAAACAATGACTTTTCAAGTGGTAAGGTCAGCCACATATGATCAAC
TTCATAAAATATGTAGACAGAAATTCAAAATTGCAGATAGTATTGAATCA
TTTATTGCTACATATACTGGAAAGAAAATAGAAGAGTCCTTTAAAGATTT
GCAAGACTATCATGAGAAACATGCTAAAGAGAAAAAAAAAGTGCTCAATT
TATATTTATATGTGCCCGTGGTTTATGCAAGACTCGAGTTTAAGTGGGCA
TTAGAACAAAATGTTGAAAGCTCGTCATCAGATATGGCGTCAAATCATGA
TATGTATGATCAGAATGGTAGTGCAAATGGTGATATTATTGTCTTTGGTT
TTCAAAAGATTGAAGATTTTCTACAAAAACGGGGTTGTTCGCATTTGCTC
CAACATTTCGTACTTCAGAAAATAGACGACACTGTTGCCTCATTCTGTGA
TGACAAAACCCTACTCGATTTGGGTTTATTGTATGGTGATTTAATTTCAT
TCAAACAAACATTTCGCACTTCAAATGACAATGGCACAAGCTCCCAAATT
TTGCACTACAGAGAAAGGGCTCAGCAGTTGAGTTCCAAACTGAAACGAAC
CCATACAGAACGAATAAGCACAACCAACCGACCAGTGACCGTTAAAAGTC
ACTTCGAAATCCAATTTGGCATCAAATGTCTCGAGAAAAAAAAATATGTT
CATAAACTGAACAAAACAATGACTTTTCAAGTGGTAAGGTCAGCCACATA
TGATCAACTTCATAAAATATGTAGACAGAAATTCAAAATTGCAGATAGTA
TTGAATCATTTATTGCTACATATACTGGAAAGAAAATAGAAGAGTCCTTT
AAAGATTTGCAAGACTATCATGAGAAACATGCTAAAGAGAAAAAAAAAGT
GCTCAATTTATATTTATATGTGCCCGTGGTTTATGCAAGACTCGAGTTTA
AGTGGGCATTAGAACAAAATGTTGAAAGCTCGTCATCAGATATGGCGTCA
AATCATGATATGTATGATCAGAATGGTAGTGCAAATGGTGATATTATTGT
CTTTGGTTTTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040436XLOC_040436Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064474-proteinTCONS_00064474-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064474-exon-scaffold_417-1575043694:51455..51595TCONS_00064474-exon-scaffold_417-1575043694:51455..51595Clytia hemisphaericaexon
TCONS_00064474-exon-scaffold_417-1575043694:50310..50942TCONS_00064474-exon-scaffold_417-1575043694:50310..50942Clytia hemisphaericaexon
TCONS_00064474-exon-scaffold_417-1510915933:51455..51595TCONS_00064474-exon-scaffold_417-1510915933:51455..51595Clytia hemisphaericaexon
TCONS_00064474-exon-scaffold_417-1510915933:50310..50942TCONS_00064474-exon-scaffold_417-1510915933:50310..50942Clytia hemisphaericaexon
TCONS_00064474-exon-scaffold_417-1491911889:51455..51595TCONS_00064474-exon-scaffold_417-1491911889:51455..51595Clytia hemisphaericaexon
TCONS_00064474-exon-scaffold_417-1491911889:50310..50942TCONS_00064474-exon-scaffold_417-1491911889:50310..50942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_417supercontigscaffold_417:50310..51595 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0755781	0	0.0655425	0	0.0836389	0.0417613	0	0	0.038264	0	0	0	0	0	0	0	0	0	0.120337	0.0861009	0	0.139389	0.213024
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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