TCONS_00064473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064473
Unique NameTCONS_00064473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length260

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064473 ID=TCONS_00064473|Name=TCONS_00064473|organism=Clytia hemisphaerica|type=transcript|length=260bp
CACAAAGAGGAATTGGCGCTATACAATGAAAGGGTTGATTCTTATCTAGA
CTTGGTCAAAGATGAAAGTAAGGTTCGAGACTACATCAAAATCTATACTA
CAATTATGCATTTGACGGAAATGGAATTTATTAGGGCTGTCGTGCTCAAT
TCCAAGCGAACAAAACCTTTGGTGGACTCGCTTTTGACGTTACAACACGT
TAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAATTGGTCACTTGTTGG
ATAAACTTGG
Run BLAST on NCBI

transcript from alignment at scaffold_417:25..643+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064473 ID=TCONS_00064473|Name=TCONS_00064473|organism=Clytia hemisphaerica|type=transcript|length=619bp|location=Sequence derived from alignment at scaffold_417:25..643+ (Clytia hemisphaerica)
CACAAAGAGGAATTGGCGCTATACAATGAAAGGGTTGATTCTTATCTAGA
CTTGGTCAAAGATGAAAGTAAGGTTCGAGTAAGGTtttaaattgtttatt
ctttaaaatgtcatttaaaaGATGTAAATTAACACATTTGAGAATCACCT
AGTGATGTTTGAACAACGACCTGTATTCACATTTAAAACATTTCTCACGC
ATGGAAGCTCATTCAATAGCNAGTAAGGTtttaaattgtttattctttaa
aatgtcatttaaaaGATGTAAATTAACACATTTGAGAATCACCTAGTGAT
GTTTGAACAACGACCTGTATTTTAAAACATTTCTCACGCATGGAAGCTCA
TTCAATAGCTCACTACGTTATGCTTCAATTATTGATTGGAAAAATACCAA
GCACAAATATTATTTGGAAATTTAACTTACCTTTTAGGACTACATCAAAA
TCTATACTACAATTATGCATTTGACGGAAATGGAATTTATTAGGGCTGTC
GTGCTCAATTCCAAGCGAACAAAACCTTTGGTGGACTCGCTTTTGACGTT
ACAACACGTTAAAAAAAGCCAATTTCCCGGATTTAGAAGCCAAATTGGTC
ACTTGTTGGATAAACTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040435XLOC_040435Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064473-exon-scaffold_417-1491911889:25..102TCONS_00064473-exon-scaffold_417-1491911889:25..102Clytia hemisphaericaexon
TCONS_00064473-exon-scaffold_417-1510915933:25..102TCONS_00064473-exon-scaffold_417-1510915933:25..102Clytia hemisphaericaexon
TCONS_00064473-exon-scaffold_417-1575043694:25..102TCONS_00064473-exon-scaffold_417-1575043694:25..102Clytia hemisphaericaexon
TCONS_00064473-exon-scaffold_417-1491911889:462..643TCONS_00064473-exon-scaffold_417-1491911889:462..643Clytia hemisphaericaexon
TCONS_00064473-exon-scaffold_417-1510915933:462..643TCONS_00064473-exon-scaffold_417-1510915933:462..643Clytia hemisphaericaexon
TCONS_00064473-exon-scaffold_417-1575043694:462..643TCONS_00064473-exon-scaffold_417-1575043694:462..643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_417supercontigscaffold_417:25..643 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	2.09873	2.53203	3.16061	2.76602	2.74093	1.33021	3.93491	0.436605	0.453418	2.98217	4.40045	0.492818	2.52561	4.88498	0.730254	0	0.928787	0	2.73728	0	0.629048	0.900166	0.960681	0.728643	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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