TCONS_00064465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064465
Unique NameTCONS_00064465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064465 ID=TCONS_00064465|Name=TCONS_00064465|organism=Clytia hemisphaerica|type=transcript|length=863bp
TgacataactttttcattcaataattaaaaaaactacattTGCTAAAGAA
ACTAAAAAAGGACTCCTAATTGAACATATCATAAATATTTATACATACTG
GGAAAAATAAAATAGCATAGTCAgcatttttatttacaaaatatgTGGTA
TAAGTTGTATGAACCACAGATTATGAAAACAATTTATAATAATCCACCAA
CTTAGAATAATGGATCGGGAACATTTTTGAATCTCGATTGATGACATGAC
ATCCTAAATCTCATTTCTTAAACGATATTAGATAAATTTCGTATTACAAT
TTGTTAAAATTCGTCTACTTATCCTGATCAAATCTTGCATTTGATGACTT
GAATTTTACACTTAAGACCCTTAAAGATCTGATTTAGAAGAGCTAAGAAT
GATCAGTTTCCCTCTTAATATCATGATATCGATCAGGCTTTAGAATAATC
GTGACAAGTCGATGGTGTTGCAGATACATTAtatccaatgaagtataagc
tcGAAGGGCtggaagtcaatctctttggtaggatttgaagccaacaaatc
ctaccaaagttgcgcggccttgagcgactcgcctggtttttacacaaatg
acagattgaaactaaaatttaccgctaaatttcgaaaaaaacatcaatcg
taaacaaaggaattgctagattcaatctgttgtcaaaaatacggcacagg
cgcattttttaagacttcactttttcttgcctgagaaaagtTAAGACATT
CTACTCTAGATTCTACTCCCTTCgggttttaaactcaatgattatatccc
ctttctcacagacccggtataATCTTTACAGTCAGTGGGGgtgaaaataa
cggactgaattcg
Run BLAST on NCBI

transcript from alignment at scaffold_415:224969..225831

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064465 ID=TCONS_00064465|Name=TCONS_00064465|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at scaffold_415:224969..225831 (Clytia hemisphaerica)
cgaattcagtccgttattttcacCCCCACTGACTGTAAAGATtataccgg
gtctgtgagaaaggggatataatcattgagtttaaaacccGAAGGGAGTA
GAATCTAGAGTAGAATGTCTTAacttttctcaggcaagaaaaagtgaagt
cttaaaaaatgcgcctgtgccgtatttttgacaacagattgaatctagca
attcctttgtttacgattgatgtttttttcgaaatttagcggtaaatttt
agtttcaatctgtcatttgtgtaaaaaccaggcgagtcgctcaaggccgc
gcaactttggtaggatttgttggcttcaaatcctaccaaagagattgact
tccaGCCCTTCgagcttatacttcattggataTAATGTATCTGCAACACC
ATCGACTTGTCACGATTATTCTAAAGCCTGATCGATATCATGATATTAAG
AGGGAAACTGATCATTCTTAGCTCTTCTAAATCAGATCTTTAAGGGTCTT
AAGTGTAAAATTCAAGTCATCAAATGCAAGATTTGATCAGGATAAGTAGA
CGAATTTTAACAAATTGTAATACGAAATTTATCTAATATCGTTTAAGAAA
TGAGATTTAGGATGTCATGTCATCAATCGAGATTCAAAAATGTTCCCGAT
CCATTATTCTAAGTTGGTGGATTATTATAAATTGTTTTCATAATCTGTGG
TTCATACAACTTATACCAcatattttgtaaataaaaatgcTGACTATGCT
ATTTTATTTTTCCCAGTATGTATAAATATTTATGATATGTTCAATTAGGA
GTCCTTTTTTAGTTTCTTTAGCAaatgtagtttttttaattattgaatga
aaaagttatgtcA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040428XLOC_040428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064465-exon-scaffold_415-1491911889:224969..225831TCONS_00064465-exon-scaffold_415-1491911889:224969..225831Clytia hemisphaericaexon
TCONS_00064465-exon-scaffold_415-1510915933:224969..225831TCONS_00064465-exon-scaffold_415-1510915933:224969..225831Clytia hemisphaericaexon
TCONS_00064465-exon-scaffold_415-1575043694:224969..225831TCONS_00064465-exon-scaffold_415-1575043694:224969..225831Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:224969..225831 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0598729	0.0535597	0.0917603	0.152044	0.697361	0.526355	0.738966	1.21077	0.531516	0.479721	0.499128	0.285339	0.634673	0.82283	0.373779	0.453241	0.131251	0.380042	0.508394	0.650007	1.07245	1.11564	0.903616	1.3366	0.772528	1.31261	0.880384	0.67706	0.442127	0.269229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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