TCONS_00064452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064452
Unique NameTCONS_00064452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064452 ID=TCONS_00064452|Name=TCONS_00064452|organism=Clytia hemisphaerica|type=transcript|length=339bp
CGATTTGACCCAAGATCGACCAAAAAACACAGATCTACACAATGTCAAGA
TCAAGAAAGTCACTCCGGTACAAAAAAGtaCTGCTCAACGAAGAAGTCCA
TCAATGGTATCTAAAAACATTGTCAGTACGACGCCAGACGCTCTTTTCGA
CCAAAATGATCACGGAAGACTGTGGAGCATGTACGACACTTCACTTGTCA
CCTTCTGTATCGGAATATGGTTTCTCCTCATCAAGGTCTGCAGTATTGTC
ACCAATGATGATGATCCATTCTGGTAGTGAAGTCATCTTCAACTAAATAC
GTATACatttgtaaataattttctcaTCCTGGATTCTTT
Run BLAST on NCBI

transcript from alignment at scaffold_415:215373..215877-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064452 ID=TCONS_00064452|Name=TCONS_00064452|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_415:215373..215877- (Clytia hemisphaerica)
CGATTTGACCCAAGATCGACCAAAAAACACAGATCTACACAATGTCAAGA
TCAAGAAAGTCACTCCGGTACAAAAAAGGTATCTAAGCTAATGAAGAATC
TTGAATTTTACTCCGTTTCACTTTTTTCCTCTCTGCTTCTAGACATTTTC
ATTCAATACTAATAGCTATTGCTTCTTAACCATTTTACAAGGGTCGATTA
GTAAAGCTTTCTTTCCATTAAACATTATTTTTCTGATTTTTTAGTACTGC
TCAACGAAGAAGTCCATCAATGGTATCTAAAAACATTGTCAGTACGACGC
CAGACGCTCTTTTCGACCAAAATGATCACGGAAGACTGTGGAGCATGTAC
GACACTTCACTTGTCACCTTCTGTATCGGAATATGGTTTCTCCTCATCAA
GGTCTGCAGTATTGTCACCAATGATGATGATCCATTCTGGTAGTGAAGTC
ATCTTCAACTAAATACGTATACATTTGTAAATAATTTTCTCATCCTGGAT
TCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040415XLOC_040415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064452-exon-scaffold_415-1575043694:215800..215877TCONS_00064452-exon-scaffold_415-1575043694:215800..215877Clytia hemisphaericaexon
TCONS_00064452-exon-scaffold_415-1575043694:215373..215633TCONS_00064452-exon-scaffold_415-1575043694:215373..215633Clytia hemisphaericaexon
TCONS_00064452-exon-scaffold_415-1510915933:215800..215877TCONS_00064452-exon-scaffold_415-1510915933:215800..215877Clytia hemisphaericaexon
TCONS_00064452-exon-scaffold_415-1510915933:215373..215633TCONS_00064452-exon-scaffold_415-1510915933:215373..215633Clytia hemisphaericaexon
TCONS_00064452-exon-scaffold_415-1491911889:215800..215877TCONS_00064452-exon-scaffold_415-1491911889:215800..215877Clytia hemisphaericaexon
TCONS_00064452-exon-scaffold_415-1491911889:215373..215633TCONS_00064452-exon-scaffold_415-1491911889:215373..215633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:215373..215877 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.266124	0	0	0	0	0	0	0	0	0	0	0.1815	0	0.154964	0.332599	0	0	0	0	0	0	0	0	0.293004	0.522999	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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