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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064441 ID=TCONS_00064441|Name=TCONS_00064441|organism=Clytia hemisphaerica|type=transcript|length=2890bpRun BLAST on NCBI protein sequence of TCONS_00064441-protein >TCONS_00064441-protein ID=TCONS_00064441-protein|Name=TCONS_00064441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=619bp IASSSTSMLQIFYNKKSTMVSMKDGKQTPNSRRTSQGKSKEEKLSKQLDERun BLAST on NCBI transcript from alignment at scaffold_415:26256..82999- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064441 ID=TCONS_00064441|Name=TCONS_00064441|organism=Clytia hemisphaerica|type=transcript|length=56744bp|location=Sequence derived from alignment at scaffold_415:26256..82999- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_415:26256..82999- >TCONS_00064441 ID=TCONS_00064441|Name=TCONS_00064441|organism=Clytia hemisphaerica|type=CDS|length=26040bp|location=Sequence derived from alignment at scaffold_415:26256..82999- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064441 vs. Swiss-Prot (Human)
Match: ARMC4 (Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=1 SV=1) HSP 1 Score: 769.615 bits (1986), Expect = 0.000e+0 Identity = 389/547 (71.12%), Postives = 462/547 (84.46%), Query Frame = 3
Query: 210 RRHESNADLPSEYWQIQKLVKYLKGGNQTATIIALVAMRDFNLQLETCQLAIRDVGGLEVLINLLETNELKCQIGSLKILKDISTNLQIRKTIVDLGGLQTMVKILNSSNKELKCLAAETISHXXXXXXXXXXXXQYGGIQQLVCLLNCG---------DVLKAPDFLIDVARAGALALWSCSKSTKNKIAIKNAGGIPLLAKLLKSNNENMLIPVVGTLQECAQEPTYRSAIRTEGMVEDLVFNLKKENAELQRHCASAIFKCAEDKETRDLVRQYGGLEPLATLLGNTDKKDLLVAVTGAVWKCAISEENVLVFQELKAIEQLVVLLNNQPEEVLINVVGALGECAKIPINRAAIRKANGISPMVGLLTGTNQQLLVNVTKAVGKCAMEQENMAIVDRLDGVRLLWSLLKNPNPEVQSSAAWAICPCIENAKDAGEMVRSFVGGLELIVSLLKSEETEVLASVCAAIANIAKDEENLAVITDHGVVPMLAKLTHTSDDRLRHHLAEAIARCCTWGNNRVAFGQAGAVAPLVDYLNSKNSDVHRAT 1823
R E++ADLPSEYWQIQKLVKYLKGGNQTAT+IAL +MRDF+L ETCQLAIRDVGGLEVLINLLET+E+KC+IGSLKILK+IS N QIR+ IVDLGGL MV IL+S +K LKCLAAETI++VA+F+RARR VRQ+GGI +LV LL+C + +A D ++VAR GALALWSCSKS NK AI+ AGGIPLLA+LLK+++ENMLIPVVGTLQECA E YR+AI+ E ++E+LV NL EN +LQ HCA AI++CAEDKETRDLVR +GGL+PLA+LL NTD K+ L AVTGA+WKC+IS+ENV F+E KAIE LV LL +QPEEVL+NVVGALGEC + NR +RK GI P+V LL G NQ LLVNVTKAVG CA+E E+M I+DRLDGVRLLWSLLKNP+P+V++SAAWA+CPCI+NAKDAGEMVRSFVGGLELIV+LLKS+ EVLASVCAAI NIAKD+ENLAVITDHGVVP+L+KL +T++++LRHHLAEAI+RCC WG NRVAFG+ AVAPLV YL S +++VHRAT
Sbjct: 439 HRQEASADLPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFSLAQETCQLAIRDVGGLEVLINLLETDEVKCKIGSLKILKEISHNPQIRQNIVDLGGLPIMVNILDSPHKSLKCLAAETIANVAKFKRARRVVRQHGGITKLVALLDCAHDSTKPAQSSLYEARD--VEVARCGALALWSCSKSHTNKEAIRKAGGIPLLARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCAEDKETRDLVRLHGGLKPLASLLNNTDNKERLAAVTGAIWKCSISKENVTKFREYKAIETLVGLLTDQPEEVLVNVVGALGECCQERENRVIVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMMIIDRLDGVRLLWSLLKNPHPDVKASAAWALCPCIKNAKDAGEMVRSFVGGLELIVNLLKSDNKEVLASVCAAITNIAKDQENLAVITDHGVVPLLSKLANTNNNKLRHHLAEAISRCCMWGRNRVAFGEHKAVAPLVRYLKSNDTNVHRAT 983 HSP 2 Score: 113.235 bits (282), Expect = 2.829e-25 Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 1
Query: 1825 AFGQAGAVAPLVDYLNSKNSDVHRATAKALFQLSRDPKNCIAMHESLVVESLVKMVGSKDDVLQEAAAGSLANIRKLALANEKAKY 2082
AFG+ AVAPLV YL S +++VHRATA+AL+QLS D NCI MHE+ V+ L+ MVGS D LQEAAAG ++NIR+LALA EKA+Y
Sbjct: 958 AFGEHKAVAPLVRYLKSNDTNVHRATAQALYQLSEDADNCITMHENGAVKLLLDMVGSPDQDLQEAAAGCISNIRRLALATEKARY 1043 The following BLAST results are available for this feature:
BLAST of TCONS_00064441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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