TCONS_00064438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064438
Unique NameTCONS_00064438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064438 ID=TCONS_00064438|Name=TCONS_00064438|organism=Clytia hemisphaerica|type=transcript|length=1120bp
AAATTTTTGAGATAAACAGGACTCTCCTCGTAAATTTATGACAAAAACAG
GAATCCCTATAAGTAATCTTTTGAAGAGGAAAGTATCATCCAAAAATTGT
TATGGATCGGAAGCTGTACGGTCGAATCTGTTGgttacaaaaatattctt
ccagtAGGGGGGGAGCCCCAGAAAAAGGATAGCTGGAAAAGACCAAATGG
GAGTATTAGGCCCCAGATGGGGGACCTGAAAACCTGGAGGAGGTCATAGA
AGACTGCTGTTTTTCTCAATAATTTAAGGCAGGCAAAATTTACCTggcac
tttttttaatttgatctgCTTAAACCGCTGACTATATACTCCATCGAATG
TACTGTCTGCAATTGAAAGTAAGCGATTCTTATAGTGGTCCTCGAATTCA
ACCATCAATTTATCCAGCAACATGTTGATGTTAAATTGACGTTGTCGTCT
CAAAATTGAATCCTTGATAACGAGAAATTGAGATTCCACATAGTTATTGG
TGTGTGAACCACGGATTAGAATTTCAGAACGAAAACATTTTGCCCAACTT
TTGCTTAATGAAAACAGTTCTTCAAAGTATGAAATGCAATGTTCGTATTT
TGACGTAACATTCGACTCCTGAAGCAGGACTGAAGTCTCTTCAAATTCCT
CCAAGTTTAGTGCGTAAATGACATTCTTAAACAGCTTCATAATTTCAACC
CTATCGTTTTGAGATACCCCATGATTTTTATCATACAACCATCTCCAGAC
TTGCTGGAGAATATGAAAAATGCAAAGAAGCAAAGTTGAATCAGGCCATA
TCTTATGCAGACTATTCCGTAGTTCACCACAATTGTCTGTCATAAAAATG
TCGGGCCCGGTTGGACTATTGTAAAATGCTTCTTCCGGTAGTATTCCTTT
GTATAGGGTCAGTGCTTTAACGATAGTTTCTTCTCGCTCGTCGCTGGTAA
TGATAATACCGAGTGGTAAAGCACCTGCAACGGAATGTGTAACCAAGAGA
AAGAATCGCAAATTATGCTCGTCGAGATTTGATGTGGAGTCAATGAAAAC
TATTTCTGAAGATTCCCTGACCTACAAACATAATAAAAcataatgaaaat
ttaatattgGTAAGACTTNN
Run BLAST on NCBI

transcript from alignment at scaffold_415:339592..340944+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064438 ID=TCONS_00064438|Name=TCONS_00064438|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at scaffold_415:339592..340944+ (Clytia hemisphaerica)
AAATTTTTGAGATAAACAGGACTCTCCTCGTAAATTTATGACAAAAACAG
GAATCCCTATAAGTAATCTTTTGAAGAGGAAAGTATCATCCAAAAATTGT
TATGGATCGGAAGCTGTACGGTCGAATCTGTTGgttacaaaaatattctt
ccagtAGGGGGGGAGCCCCAGAAAAAGGATAGCTGGAAAAGACCAAATGG
GAGTATTAGGCCCCAGATGGGGGACCTGAAAACCTGGAGGAGGTCATAGA
AGACTGCTGTTTTTCTCAATAATTTAAGGCAGGCAAAATTTACCTggcac
tttttttaatttgatctgCTTAAACCGCTGACTATATACTCCATCGAATG
TACTGTCTGCAATTGAAAGTAAGCGATTCTTATAGTGGTCCTCGAATTCA
ACCATCAATTTATCCAGCAACATGTTGATGTTAAATTGACGTTGTCGTCT
CAAAATTGAATCCTTGATAACGAGAAATTGAGATTCCACATAGTTATTGG
TGTGTGAACCACGGATTAGAATTTCAGAACGAAAACATTTTGCCCAACTT
TTGCTTAATGAAAACAGTTCTTCAAAGTATGAAATGCAATGTTCGTATTT
TGACGTAACATTCGACTCCTGAAGCAGGACTGAAGTCTCTTCAAATTCCT
CCAAGTTTAGTGCGTAAATGACATTCTTAAACAGCTTCATAATTTCAACC
CTATCGTTTTGAGATACCCCATGATTTTTATCATACAACCATCTCCAGAC
TTGCTGGAGAATATGAAAAATGCAAAGAAGCAAAGTTGAATCAGGCCATA
TCTTATGCAGACTATTCCGTAGTTCACCACAATTGTCTGTCATAAAAATG
TCGGGCCCGGTTGGACTATTGTAAAATGCTTCTTCCGGTAGTATTCCTTT
GTATAGGGTCAGTGCTTTAACGATAGTTTCTTCTCGCTCGTCGCTGGTAA
TGATAATACCTGCAAGAAGACAATGAGTTTCAAATTAGTAAGATAAAAAA
GAGTTTCATAAAAAGGCTGTCAAGAATCTGAAATGCTCATAACTTATGGA
ATGATATAAATGATTGACCCCAAAAGTAGCAAAACAAAAAGCGTTTAGAG
GTCAATCAGCTTAGAGATTTGTCTGATATCTTTTGTCTGAATGAATATTC
CGAGAAATATTTTAATGCGATAGAATTATGCGCAATACATACCGAGTGGT
AAAGCACCTGCAACGGAATGTGTAACCAAGAGAAAGAATCGCAAATTATG
CTCGTCGAGATTTGATGTGGAGTCAATGAAAACTATTTCTGAAGATTCCC
TGACCTACAAACATAATAAAAcataatgaaaatttaatattgGTAAGACT
TNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040407XLOC_040407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064438-exon-scaffold_415-1491911889:339592..340546TCONS_00064438-exon-scaffold_415-1491911889:339592..340546Clytia hemisphaericaexon
TCONS_00064438-exon-scaffold_415-1510915933:339592..340546TCONS_00064438-exon-scaffold_415-1510915933:339592..340546Clytia hemisphaericaexon
TCONS_00064438-exon-scaffold_415-1575043694:339592..340546TCONS_00064438-exon-scaffold_415-1575043694:339592..340546Clytia hemisphaericaexon
TCONS_00064438-exon-scaffold_415-1491911889:340780..340944TCONS_00064438-exon-scaffold_415-1491911889:340780..340944Clytia hemisphaericaexon
TCONS_00064438-exon-scaffold_415-1510915933:340780..340944TCONS_00064438-exon-scaffold_415-1510915933:340780..340944Clytia hemisphaericaexon
TCONS_00064438-exon-scaffold_415-1575043694:340780..340944TCONS_00064438-exon-scaffold_415-1575043694:340780..340944Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_415supercontigscaffold_415:339592..340944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0785279	0.165477	0	0.0431392	0.157553	0.226891	0.667416	0.549893	0.901712	0.804864	0.831865	0.581715	0.885233	0.310204	0.333145	0.528096	0.517623	0.421825	0.248388	0.346561	0.702357	0.351754	0.22026	0.291626	1.02422	1.00789	0.728861	0.887536	0.345796	0.220195
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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