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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064433 ID=TCONS_00064433|Name=TCONS_00064433|organism=Clytia hemisphaerica|type=transcript|length=2696bp
ATTCAGTGGAAAGAAAATATACATAGACAGGAATAATTGGATCCGATTTT
ATTGTTAGAAAAACTATCCTACACTGTCTACCATGTTTGAATGCCCCCTT
TTGGATGGGAACGACATATTATGTCAGTCAGGGGGTAAATTGATTGATGA
CTAATTCCATTACCATATCCATGCTAGCATATATCATAAACCCCCGTCTA
TCAAAATTACACAAAATTATGACAatgcttttaatttttaaaaaagggag
gaaaaaaattcatcaattgATGCAAATTCtattaaaatttatcaaaaaca
aaatttttatagTATGTTAATGTTCATAAAACATTGGGGTTTAAAGGCTC
AACCTTTTAGTTTGACGAAGTAATCCATTGGTGTAAGACGATACAAAGCA
CTTTCTGTTGGAGAACATCTTTCTGTTAAGAAGATTTTACAAGTGCTAAT
TTGGAAGAAACGAGATAATCGCACAGATCATTGATATTACCTTCATAAAG
GTGTAagtacattttcattttttccactGATTAAAATGTAGTCTGTTTAT
ATTCAAACTGTTTATTTTGACATCTCACTTTTCCTGCTTCTACACTCTTT
TTCCTAAGAACCGGTAATTTTTGTTGAGActcagctgttcttattttttg
cactttgaacctaaaattgttcttatcatgttcttaattttatgGCAAAA
TTAAGGTAGCATAGACCTATCCTATTTTCACTACTTCGACCCTCAATTTG
ACTAAAACTCAGTCATTTCAGGATTAGCATTGTTCTtaactctttttttc
atttcatcatttttgaGCCTCTCTTTTCTTATaagattgttcttaaaaaa
gagTTTTCTTGATGTTTATAAATTTTGGATCGGTAAATTTGTCGAagatc
gggctccgtcacattcgagggttcatagtcatgcacctttgtgccaaaaa
tcaaaaaaaattgaataagccaatcttgagaaaagctggcaactaACGCA
CACACacacgaacgaacatgggttaataaatacgtttttttataataaca
aattATATGAACATAAGGTCAAGTATAACGTCCCCGGGGGGGATAACGTC
ATAAGTCAAGAacaagtcaagaacattttaaggctttgaggaccctataa
cacctattttcttagaaaaatggatagaaatactcacaaaatggtgaaaa
taagataaaaacatgtaaagaatatttttacacccgaatgcttcaaaaaa
aattggatgttttttcaaaaaaaacgtgtagttacaCGAATTGGAAACCT
TTTTCGAAATATATAATGGCTTAAATTTTCAAGGTCATTCctgaaacaac
aacaaaaaacagaagaaaaaaaggaaaaacaaaaatttaattagCATGTG
CCTAAATCGTCAGGCATCAATCATAATGTCGTCATTCCAAAAGGATAATG
ATTAAAAGCACAGTTTGAGATTGCAGTCTTCATTTCTAATCACCAACAAA
AATTCAGCTTGGTTTCTGCAAGATTTGATTTATCAACAAAAACGTAATAC
AATTCACACCATCTTTCTAACGAGATTATTTTGCTCCATAATATTTCCGT
TGCCTGCCTGATGCCAAATGTTTAATCAGATGAGCATATATTAAATACAT
TTGATGTAATTAGTAACTCTTAATTATCACTAACTTTCGATAAATAAAAG
CAGTTTAATTATTTCATATGCATTACCTTCATGATTAACATGTCAGTGTT
TCCATGCAAAGCTGGATACGATTCGGGTAAAGGCAACAATTCTCATATAT
TTCTTCCACTGGGTCCGAAGTCATTTCTGTAGGGAACTAGTTTACAATCT
AAATATTGAATAATCGAAGATTCTGGTTCGGTTATTTTCTGCATGTCTAG
TTTTTCTTGTCGATCAAACAAGTTGTGAATATAGAATGTGTCATTCCAGA
GTCGGATCAAATGCCTTTTTATAAAAGCAAATAATCAATAGAACCGTAAG
ATTATTGAAAGACTACATGTGGTATCTTGTTGTTATTCCGATTACCAATA
ACTTTGCTCATtctctttcaaaatttgataataacGATTCCAATATTTAA
TGATATGCCTTTATTTCAGTGAGAGCAATTGCCATCTAGTCATACACAGA
TATAGCTCTTTTATAACCAATTTCAATTTGCAGTTTCAATATCCAATAAT
CCAGTTTTCATTTGGAATCACTTTGAAAAAAAGCAAGGATCAAAAGTTTT
CGTAACATTTACAGAATGATAACGCATAATACCCATTCTTGTaggttttt
aatttatttttacgcTTTTTTGATAGTAGCTaaattgaaagtgaaagaaa
ttaaactgcaaaaaacaaaaatgttacaaaacatatactgatggcgaaat
atatagcatggtatgggctgacagtttgaatttcccagatcctattaaag
gttggaaatttagccaataaaattttgttattcttttactggtcacacta
tCTTAGAGAATTTTAAaaccgaaatttggtttttattttagttagcgagg
acagcgctaaattcgaatttcccactgttaattttttgaggcagcacagg
tcatacccgtcctgtatacatcagattataaaaatacaggaagGGTCTCC
TGTCTACCATAAAACCCCTTAACGCTAAATTGCTGTTGAAACAAAG Run BLAST on NCBI transcript from alignment at scaffold_415:226842..229537+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064433 ID=TCONS_00064433|Name=TCONS_00064433|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at scaffold_415:226842..229537+ (Clytia hemisphaerica)
ATTCAGTGGAAAGAAAATATACATAGACAGGAATAATTGGATCCGATTTT
ATTGTTAGAAAAACTATCCTACACTGTCTACCATGTTTGAATGCCCCCTT
TTGGATGGGAACGACATATTATGTCAGTCAGGGGGTAAATTGATTGATGA
CTAATTCCATTACCATATCCATGCTAGCATATATCATAAACCCCCGTCTA
TCAAAATTACACAAAATTATGACAatgcttttaatttttaaaaaagggag
gaaaaaaattcatcaattgATGCAAATTCtattaaaatttatcaaaaaca
aaatttttatagTATGTTAATGTTCATAAAACATTGGGGTTTAAAGGCTC
AACCTTTTAGTTTGACGAAGTAATCCATTGGTGTAAGACGATACAAAGCA
CTTTCTGTTGGAGAACATCTTTCTGTTAAGAAGATTTTACAAGTGCTAAT
TTGGAAGAAACGAGATAATCGCACAGATCATTGATATTACCTTCATAAAG
GTGTAagtacattttcattttttccactGATTAAAATGTAGTCTGTTTAT
ATTCAAACTGTTTATTTTGACATCTCACTTTTCCTGCTTCTACACTCTTT
TTCCTAAGAACCGGTAATTTTTGTTGAGActcagctgttcttattttttg
cactttgaacctaaaattgttcttatcatgttcttaattttatgGCAAAA
TTAAGGTAGCATAGACCTATCCTATTTTCACTACTTCGACCCTCAATTTG
ACTAAAACTCAGTCATTTCAGGATTAGCATTGTTCTtaactctttttttc
atttcatcatttttgaGCCTCTCTTTTCTTATaagattgttcttaaaaaa
gagTTTTCTTGATGTTTATAAATTTTGGATCGGTAAATTTGTCGAagatc
gggctccgtcacattcgagggttcatagtcatgcacctttgtgccaaaaa
tcaaaaaaaattgaataagccaatcttgagaaaagctggcaactaACGCA
CACACacacgaacgaacatgggttaataaatacgtttttttataataaca
aattATATGAACATAAGGTCAAGTATAACGTCCCCGGGGGGGATAACGTC
ATAAGTCAAGAacaagtcaagaacattttaaggctttgaggaccctataa
cacctattttcttagaaaaatggatagaaatactcacaaaatggtgaaaa
taagataaaaacatgtaaagaatatttttacacccgaatgcttcaaaaaa
aattggatgttttttcaaaaaaaacgtgtagttacaCGAATTGGAAACCT
TTTTCGAAATATATAATGGCTTAAATTTTCAAGGTCATTCctgaaacaac
aacaaaaaacagaagaaaaaaaggaaaaacaaaaatttaattagCATGTG
CCTAAATCGTCAGGCATCAATCATAATGTCGTCATTCCAAAAGGATAATG
ATTAAAAGCACAGTTTGAGATTGCAGTCTTCATTTCTAATCACCAACAAA
AATTCAGCTTGGTTTCTGCAAGATTTGATTTATCAACAAAAACGTAATAC
AATTCACACCATCTTTCTAACGAGATTATTTTGCTCCATAATATTTCCGT
TGCCTGCCTGATGCCAAATGTTTAATCAGATGAGCATATATTAAATACAT
TTGATGTAATTAGTAACTCTTAATTATCACTAACTTTCGATAAATAAAAG
CAGTTTAATTATTTCATATGCATTACCTTCATGATTAACATGTCAGTGTT
TCCATGCAAAGCTGGATACGATTCGGGTAAAGGCAACAATTCTCATATAT
TTCTTCCACTGGGTCCGAAGTCATTTCTGTAGGGAACTAGTTTACAATCT
AAATATTGAATAATCGAAGATTCTGGTTCGGTTATTTTCTGCATGTCTAG
TTTTTCTTGTCGATCAAACAAGTTGTGAATATAGAATGTGTCATTCCAGA
GTCGGATCAAATGCCTTTTTATAAAAGCAAATAATCAATAGAACCGTAAG
ATTATTGAAAGACTACATGTGGTATCTTGTTGTTATTCCGATTACCAATA
ACTTTGCTCATtctctttcaaaatttgataataacGATTCCAATATTTAA
TGATATGCCTTTATTTCAGTGAGAGCAATTGCCATCTAGTCATACACAGA
TATAGCTCTTTTATAACCAATTTCAATTTGCAGTTTCAATATCCAATAAT
CCAGTTTTCATTTGGAATCACTTTGAAAAAAAGCAAGGATCAAAAGTTTT
CGTAACATTTACAGAATGATAACGCATAATACCCATTCTTGTaggttttt
aatttatttttacgcTTTTTTGATAGTAGCTaaattgaaagtgaaagaaa
ttaaactgcaaaaaacaaaaatgttacaaaacatatactgatggcgaaat
atatagcatggtatgggctgacagtttgaatttcccagatcctattaaag
gttggaaatttagccaataaaattttgttattcttttactggtcacacta
tCTTAGAGAATTTTAAaaccgaaatttggtttttattttagttagcgagg
acagcgctaaattcgaatttcccactgttaattttttgaggcagcacagg
tcatacccgtcctgtatacatcagattataaaaatacaggaagGGTCTCC
TGTCTACCATAAAACCCCTTAACGCTAAATTGCTGTTGAAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064433-exon-scaffold_415-1491911889:226842..229537 | TCONS_00064433-exon-scaffold_415-1491911889:226842..229537 | Clytia hemisphaerica | exon |
| TCONS_00064433-exon-scaffold_415-1510915933:226842..229537 | TCONS_00064433-exon-scaffold_415-1510915933:226842..229537 | Clytia hemisphaerica | exon |
| TCONS_00064433-exon-scaffold_415-1575043694:226842..229537 | TCONS_00064433-exon-scaffold_415-1575043694:226842..229537 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_415 | supercontig | scaffold_415:226842..229537 + |
Blast
The following BLAST results are available for this feature:
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