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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064427 ID=TCONS_00064427|Name=TCONS_00064427|organism=Clytia hemisphaerica|type=transcript|length=994bp
NAAAGCGCATTCGTGGAAGTAGAAACAAAGGCAACTACTAGAAATATTCA
GCTTTTGTAAGAATTTATTATTGGCTTTTCTTGGATATTGAGTAGAACAT
TTTATTTTGGTCATGATTGCCACAGTTAACTCTCACAAGTGGGATATACC
TACccactaacggtcttttcccgttacgcgtggcagggttgaatatggac
gtcgccccAAAGGAAGGCCACTTAAAAATGGTGatattgaaagaaatttc
actGTGAGAAATTAACAATAGCAATGATTTTATCAAAGATATTTACCAAT
AATTTGGTATTTATTTTTATACCTTGTCGGTTAAGATTCCTGGAAGTTCT
GTGTTATTGACTTGATTATATTCACCATCCAATTCTGATTCTTCATCATA
AGCTGAGTCTGACACTGTGTTATCTACTTCATGCCTTATGGTTTGTGAAA
TTGAGATGTGGTGGTTAGATGTGGTGGCTGGTGATCCTCCTGGTTTTGGT
GGTGGCAGGTGAGAACGACTTTCATTATTAATAAGACTTTCATGCTCAGT
AGTACACGTAGCAGTACAACTTTCAACACAAGTAGGAGCATCAAAAACag
cagccaaatccgacctacTGGCTTTTGTTTCAATGAAATTCAttaaattg
cttcatttttatgTAGTCTCAATCTCAGGCTGTGTGCAtgtttattgttg
tttttcACCTATGGCTAAATCTTCATGATGCACCGACAAGCACGGAGAct
tagaaaaatttttgaaacttttcaatactTTACCCTGGTTCGAACCTACA
TGTTTCCGATTACGAAACAACACGTAGTCTATACCACTGGGCCACGATGG
CTGCTGATTTTCCGAAATTCAAGGTTATTTATGGAGTGACACATATAGTA
TATACGGGTGAACAGACCtcacgagttaggctaactgttatgatcGCCAT
TCCTCCAGGAAGACCCCACACACGGGTGCACCACCGGGAGGGTG Run BLAST on NCBI protein sequence of TCONS_00064427-protein >TCONS_00064427-protein ID=TCONS_00064427-protein|Name=TCONS_00064427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MNFIETKASRSDLAAVFDAPTCVESCTATCTTEHESLINNESRSHLPPPK
PGGSPATTSNHHISISQTIRHEVDNTVSDSAYDEESELDGEYNQVNNTEL
PGILTDKV Run BLAST on NCBI transcript from alignment at scaffold_414:82349..83342 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064427 ID=TCONS_00064427|Name=TCONS_00064427|organism=Clytia hemisphaerica|type=transcript|length=994bp|location=Sequence derived from alignment at scaffold_414:82349..83342 (Clytia hemisphaerica)
CACCCTCCCGGTGGTGCACCCGTGTGTGGGGTCTTCCTGGAGGAATGGCg
atcataacagttagcctaactcgtgaGGTCTGTTCACCCGTATATACTAT
ATGTGTCACTCCATAAATAACCTTGAATTTCGGAAAATCAGCAGCCATCG
TGGCCCAGTGGTATAGACTACGTGTTGTTTCGTAATCGGAAACATGTAGG
TTCGAACCAGGGTAAagtattgaaaagtttcaaaaatttttctaagTCTC
CGTGCTTGTCGGTGCATCATGAAGATTTAGCCATAGGTgaaaaacaacaa
taaacaTGCACACAGCCTGAGATTGAGACTAcataaaaatgaagcaattt
aaTGAATTTCATTGAAACAAAAGCCAgtaggtcggatttggctgctGTTT
TTGATGCTCCTACTTGTGTTGAAAGTTGTACTGCTACGTGTACTACTGAG
CATGAAAGTCTTATTAATAATGAAAGTCGTTCTCACCTGCCACCACCAAA
ACCAGGAGGATCACCAGCCACCACATCTAACCACCACATCTCAATTTCAC
AAACCATAAGGCATGAAGTAGATAACACAGTGTCAGACTCAGCTTATGAT
GAAGAATCAGAATTGGATGGTGAATATAATCAAGTCAATAACACAGAACT
TCCAGGAATCTTAACCGACAAGGTATAAAAATAAATACCAAATTATTGGT
AAATATCTTTGATAAAATCATTGCTATTGTTAATTTCTCACagtgaaatt
tctttcaatatCACCATTTTTAAGTGGCCTTCCTTTggggcgacgtccat
attcaaccctgccacgcgtaacgggaaaagaccgttagtggGTAGGTATA
TCCCACTTGTGAGAGTTAACTGTGGCAATCATGACCAAAATAAAATGTTC
TACTCAATATCCAAGAAAAGCCAATAATAAATTCTTACAAAAGCTGAATA
TTTCTAGTAGTTGCCTTTGTTTCTACTTCCACGAATGCGCTTTN Coding sequence (CDS) from alignment at scaffold_414:82349..83342 >TCONS_00064427 ID=TCONS_00064427|Name=TCONS_00064427|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_414:82349..83342 (Clytia hemisphaerica)
aTGAATTTCATTGAAACAAAAGCCAgtaggtcggatttggctgctGTTTT
TGATGCTCCTACTTGTGTTGAAAGTTGTACTGCTACGTGTACTACTGAGC
ATGAAAGTCTTATTAATAATGAAAGTCGTTCTCACCTGCCACCACCAAAA
CCAGGAGGATCACCAGCCACCACATCTAACCACCACATCTCAATTTCACA
AACCATAAGGCATGAAGTAGATAACACAGTGTCAGACTCAGCTTATGATG
AAGAATCAGAATTGGATGGTGAATATAATCAAGTCAATAACACAGAACTT
CCAGGAATCTTAACCGACAAGGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064427-exon-scaffold_414-1491911889:82349..83342 | TCONS_00064427-exon-scaffold_414-1491911889:82349..83342 | Clytia hemisphaerica | exon |
| TCONS_00064427-exon-scaffold_414-1510915933:82349..83342 | TCONS_00064427-exon-scaffold_414-1510915933:82349..83342 | Clytia hemisphaerica | exon |
| TCONS_00064427-exon-scaffold_414-1575043694:82349..83342 | TCONS_00064427-exon-scaffold_414-1575043694:82349..83342 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_414 | supercontig | scaffold_414:82349..83342 . |
Blast
The following BLAST results are available for this feature:
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