TCONS_00064426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064426
Unique NameTCONS_00064426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064426 ID=TCONS_00064426|Name=TCONS_00064426|organism=Clytia hemisphaerica|type=transcript|length=254bp
GCTGCCTATCCCTAACAAAACGCTGCGCTCGCCTGTGCGCTACGCGCACA
ATATTTTGCCCGCGCGCACCCGCGCGGTGTACTTGCAAGGCCGGTGCAtc
ttatctggtaccagatgtggaaatatgctacgacacgctcTGCTCTGAAG
ATCgggcatattttaacatctggaaggtttgcaTTACGGAATTTGACTTG
ACCGCGTTTGAACATTTTGTGAGGAGCTTGGAAACGATCAACATAGCAAG
TTAG
Run BLAST on NCBI

transcript from alignment at scaffold_414:81958..82211

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064426 ID=TCONS_00064426|Name=TCONS_00064426|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_414:81958..82211 (Clytia hemisphaerica)
CTAACTTGCTATGTTGATCGTTTCCAAGCTCCTCACAAAATGTTCAAACG
CGGTCAAGTCAAATTCCGTAAtgcaaaccttccagatgttaaaatatgcc
cGATCTTCAGAGCAgagcgtgtcgtagcatatttccacatctggtaccag
ataagaTGCACCGGCCTTGCAAGTACACCGCGCGGGTGCGCGCGGGCAAA
ATATTGTGCGCGTAGCGCACAGGCGAGCGCAGCGTTTTGTTAGGGATAGG
CAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040400XLOC_040400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064426-exon-scaffold_414-1491911889:81958..82211TCONS_00064426-exon-scaffold_414-1491911889:81958..82211Clytia hemisphaericaexon
TCONS_00064426-exon-scaffold_414-1510915933:81958..82211TCONS_00064426-exon-scaffold_414-1510915933:81958..82211Clytia hemisphaericaexon
TCONS_00064426-exon-scaffold_414-1575043694:81958..82211TCONS_00064426-exon-scaffold_414-1575043694:81958..82211Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:81958..82211 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55572	2.10619	6.41661	3.98754	0	3.83605	2.77682	6.06579	6.06686	3.00591	12.3017	2.87689	3.83051	4.47528	2.04405	0	1.08092	1.10791	0	0	0.696086	2.03716	0	0.750479	6.1838	11.0378	2.96157	0	0	0.814142
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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