TCONS_00064419 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064419
Unique NameTCONS_00064419
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064419 ID=TCONS_00064419|Name=TCONS_00064419|organism=Clytia hemisphaerica|type=transcript|length=3752bp
AAATTTTTCAGCGATGTCATACCTTCGTTAGCTTGACTTGGCCcagatgg
aaaaaaatatataatcatattccgcggaatacaaaatataaaaaaaacat
cattattccgcggaatagctattccggccggaacagctattccggttccg
gcattccgTCGTTCCGCCGTTCAGCGTTTTGTCTATACCCCAAGTTTTAA
TATAGATCCACACAGATATCTGTGTATAGATCGCGGTTAACATTGTTTAT
CGGTTCCGTTCGTTCCGTCACGATTGGGAAGATGCGAACAGGAATTCAAT
ATGGCGCATCCACGTGTCTGCTCTAAAAAGTTGGGAATTTCACTGGACCA
AATTGATTGCCATTAAATGCACCATTTCTTTTTTAAGTATTGTACATTTT
TCCAGACTTtcgaaaaatctttcttttttggttTACAACATGTTAGTGAG
CCCGAAATTTGGCACAACTCAAAATATTATGTATATACTTTATTGATAGT
GATTGAGTGTTTTTGTCCAATCCAATTTTGCTAATTATTCTAaaacagtt
acctagagacaagatgatttattaaatttttcttgagggaaagtaatgta
tgtggagtaatttgttattcaatagaccgtCACGTTCTCATCCTAAACAC
AATCACTATAGCAAATTTATAAAACACTGattgaatgaaattttctacAT
AAATTTTTGGTGGTATTTGTGATTTTTCACGTTTTTGGTACCAAGTGGAT
GAATAATGGTTAAGCTCTAAAATTGATTTGTGAATGACACCTTACGACCC
ACTGCAtaatggcccgagaattctctttttattggaatttgcaTGATATG
AAGTCgaactttttttgtaaaattgaatCTATGTTGCATAAATGACTGGA
CAAGCTAAATCTATTAAATGAATGACTTTCCCAGTGCACCATTTATCtgt
cttttgtatttttttacacagcgtcaaaatcttaaatatcATCCCCTACA
CATACATAACTATTTATCAACTAACCGGTAGTGAAAATATGACTCATCGT
GGGGGCAAACGTAACTTTGATGTACCAGAAGGTATGTTAATTGTTAATTT
GGCAAGTTTTTATTCTTAAATAAAGCAGAATAAAGGCAACTAACTTCAGC
ACTCAGAAAATATAAGGCTTCAACTTGATTCAAGTGATAGCAATATCAAC
CTCTTAGCCTTCTTACCCAGCATCTTTGCAATAAGAGATAAAAATATAGC
AATGAAAATCGCGTGATGAGATTTTGTAGGAAATGCAAAACCTATGCAAC
TTTACCCAGAAAGCATCTTTTGAAGAGACATTTTTAAGCTCAATAGAGCA
GTGTAAGgtagaaatttattttcattgactTTCAAAACTTAAGTTCTtta
tagaaaatgttttaaaaaataacaCTGCAATTACTGAATTTCACCAATAT
TTTTCCTAGTCTGAAAGTACCTAGATTGCAAAGATAGTTATGTCTTCATT
ATTCTTCAATTATTTCTCATAGAAAGTGGCATTATTGTTAACATAATATA
TGAAGACCAAATCAAATCTAGTGGGGATGCAGCCAGCTACGATATTCGAG
AGCTTGGAAATTTGTCGGACTACCCAAAGGATGATAATGGAAAGAcaatt
ggaattttcgtaagtCAACCATATATATCTTGTAATCTATAGTGAATCTA
TAATATACATGTATGTTAAAGACAACGCTGTATACTGGCTAACGTACCTT
TTACATATTTAGTTTATTCAGACAGACTTTGTATGTATTTATGTGTGCCT
GAAGTCAAAAAAGAGACAGGCTATTGAGGTTAATAAAGCCTCTCAAAAAC
AAAGTAATTCTGAGACTGTCTGAGAAATGAAAGTGATTAGCATTAGCCAG
TACATTTTTAAATcctaaaaattaacattttaatgttgctgttatGATAA
TTGGTGACTATGGGAAAATGTTGACCACAGGTCGCATAACATCAATTATC
TATAATCAGTTTTCTCAATAGTGATTGACAATTGTATTTCAGGGCTATAA
AAAAAGTAGAATGCTCACTGCTTTACTGCGCTTTATACAAGACACAGTAT
ATTTTCTCTTCATTGgttatattttcatttattcTTAATATTTAGAAATT
GCAAAATGCCCCAAAGAGCTTAGAAGATCTCGTGGAGGGAGAAAGAGTGT
TTGCAATTTTCAAGCACGAGAAACATGTAAAGCACTATCCTGCcacaatt
ttaaaaatcaaaggCAGAAAGAGTAAGTGTATCATTGTAATTATACCGTC
AATTCAGACCTTTTTTAGACAAAAAAGTATTCATACCCTCTTTTATCATG
AAAATGATTCTATGATGTGATGATACTTCAATCAAGTTATTTGTGTGTTT
GTCACTTCAAATCTTAAATTTGATGCCTAATTTTCAAGCTTTTACATAAa
gagaacaataaaagaaaaatatttgatttttagaGAGATTGAATGTATAT
GTGCTTTGTGTGAAAATGGCTGGTTTTATGATTTCCGAGAAGATTGACCT
TTCCTATTAAATTGTTGGGCTTGGAATATGGTATAATAATAGTAATGATG
ATAAAACTTCtaataataacaaaaatacAAGCAAGAATAATCATTTTTAG
AGAGAAAGATTCCcgagaagaagaaaaacaataaGCAGGACACAAAACTC
ATTCAAGAGCAAACAAAAACAAGgaacaaaaataatgaaatgatgTACAC
AAACTCACTACCAGGTGCCTCATCTTCATCACCACTTAGAAAACGTAAGA
GCTTTATTTGTTCTTTGTCTTTATATAATACAATTCATTATTATATTGTA
ATAATTTGAAAGTAGTTATAAGCAAAGTCTTGATAGGTTCTTTTCACATC
AACTTCCACCAGAGCAACAAAACAACTTGAGAAGAAAGAAGGCAGCAGAG
AAACGACAACAAGAAGAAGACGAGATTGAGAAGGAGATCCAACTCAGGAT
GTCTGATGAAAACAAAGGTAAATGTTATAATGGGAATTGAATTTAAATCC
AAGGAACTTTTCTGTAGTAAGTTACTATACTAATATATAttccttttatt
ttattttatttttaaggtCTTGATGGAATGTTTCAATCAAAAAGTCATTT
ACAGGTGTTGCAAGGTATGTACAAGGTGATCTTGATCCTGGAGTGAAATG
AGGAATAATGTCAACCCCAGGATGAAACTCTTTTCGACCGGCGTCAAAAT
TAGGCAAAATCTGACATATTTGAACAAAGTAGCATTTCTTCCAAGAATGA
TTGGGAAAAATTGCTAGGTAGGAAATTTAAATGCTAGGGTGAAAAGTtca
attttgatctgttctgcaAAATGCCCTGCGACGCCAGTTTTGGTCCATCA
TACATAGGCTAGGGCTGTGAAATTATGCAGCGATATGATAAAGCTGCGGA
ATTTTGCAGCGTTGCGGAGCTATGGACAACGGCGCTAAAAAATGCGAAAT
TTCGCAACGTTGCGGATCTATGCAATTTCCCGAATAACTGAATGTAactg
aacacaatcgaataattgcgtttgacaatacaccttatcggaaattccac
aaaaacaattgcgctaaaatggatccgttgaaattgggaggtaaacataa
atggtAGCAAGAGTAGCGCCAAAAGTTCCTGCGTAAAACAAGAACTCATT
TGCTTATATCTGGCTTTTTTAtatgttcctaaaaatacactgaatttgaa
aa
Run BLAST on NCBI

transcript from alignment at scaffold_414:66235..70361-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064419 ID=TCONS_00064419|Name=TCONS_00064419|organism=Clytia hemisphaerica|type=transcript|length=4127bp|location=Sequence derived from alignment at scaffold_414:66235..70361- (Clytia hemisphaerica)
AAATTTTTCAGCGATGTCATACCTTCGTTAGCTTGACTTGGCCCAGATGG
AAAAAAATATATAATCATATTCCGCGGAATACAAAATATAAAAAAAACAT
CATTATTCCGCGGAATAGCTATTCCGGCCGGAACAGCTATTCCGGTTCCG
GCATTCCGTCGTTCCGCCGTTCAGCGTTTTGTCTATACCCCAAGTTTTAA
TATAGATCCACACAGATATCTGTGTATAGATCGCGGTTAACATTGTTTAT
CGGTTCCGTTCGTTCCGTCACGATTGGGAAGATGCGAACAGGAATTCAAT
ATGGCGCATCCACGTGTCTGCTCTAAAAAGTTGGGAATTTCACTGGACCA
AATTGATTGCCATTAAATGCACCATTTCTTTTTTAAGTATTGTACATTTT
TCCAGACTTTCGAAAAATCTTTCTTTTTTGGTTTACAACATGTTAGTGAG
CCCGAAATTTGGCACAACTCAAAATATTATGTATATACTTTATTGATAGT
GATTGAGTGTTTTTGTCCAATCCAATTTTGCTAATTATTCTAAAACAGTT
ACCTAGAGACAAGATGATTTATTAAATTTTTCTTGAGGGAAAGTAATGTA
TGTGGAGTAATTTGTTATTCAATAGACCGTCACGTTCTCATCCTAAACAC
AATCACTATAGCAAATTTATAAAACACTGATTGAATGAAATTTTCTACAT
AAATTTTTGGTGGTATTTGTGATTTTTCACGTTTTTGGTACCAAGTGGAT
GAATAATGGTTAAGCTCTAAAATTGATTTGTGAATGACACCTTACGACCC
ACTGCATAATGGCCCGAGAATTCTCTTTTTATTGGAATTTGCATGATATG
AAGTCGAACTTTTTTTGTAAAATTGAATCTATGTTGCATAAATGACTGGA
CAAGCTAAATCTATTAAATGAATGACTTTCCCAGTGCACCATTTATCTGT
CTTTTGTATTTTTTTACACAGCGTCAAAATCTTAAATATCATCCCCTACA
CATACATAACTATTTATCAACTAACCGGTAGTGAAAATATGACTCATCGT
GGGGGCAAACGTAACTTTGATGTACCAGAAGGTATGTTAATTGTTAATTT
GGCAAGTTTTTATTCTTAAATAAAGCAGAATAAAGGCAACTAACTTCAGC
ACTCAGAAAATATAAGGCTTCAACTTGATTCAAGTGATAGCAATATCAAC
CTCTTAGCCTTCTTACCCAGCATCTTTGCAATAAGAGATAAAAATATAGC
AATGAAAATCGCGTGATGAGATTTTGTAGGAAATGCAAAACCTATGCAAC
TTTACCCAGAAAGCATCTTTTGAAGAGACATTTTTAAGCTCAATAGAGCA
GTGTAAGGTAGAAATTTATTTTCATTGACTTTCAAAACTTAAGTTCTTTA
TAGAAAATGTTTTAAAAAATAACACTGCAATTACTGAATTTCACCAATAT
TTTTCCTAGTCTGAAAGTACCTAGATTGCAAAGATAGTTATGTCTTCATT
ATTCTTCAATTATTTCTCATAGAAAGTGGCATTATTGTTAACATAATATA
TGAAGACCAAATCAAATCTAGTGGGGATGCAGCCAGCTACGATATTCGAG
AGCTTGGAAATTTGTCGGACTACCCAAAGGATGATAATGGAAAGACAATT
GGAATTTTCGTAAGTCAACCATATATATCTTGTAATCTATAGTGAATCTA
TAATATACATGTATGTTAAAGACAACGCTGTATACTGGCTAACGTACCTT
TTACATATTTAGTTTATTCAGACAGACTTTGTATGTATTTATGTGTGCCT
GAAGTCAAAAAAGAGACAGGCTATTGAGGTTAATAAAGCCTCTCAAAAAC
AAAGTAATTCTGAGACTGTCTGAGAAATGAAAGTGATTAGCATTAGCCAG
TACATTTTTAAATCCTAAAAATTAACATTTTAATGTTGCTGTTATGATAA
TTGGTGACTATGGGAAAATGTTGACCACAGGTCGCATAACATCAATTATC
TATAATCAGTTTTCTCAATAGTGATTGACAATTGTATTTCAGGGCTATAA
AAAAAGTAGAATGCTCACTGCTTTACTGCGCTTTATACAAGACACAGTAT
ATTTTCTCTTCATTGGTTATATTTTCATTTATTCTTAATATTTAGAAATT
GCAAAATGCCCCAAAGAGCTTAGAAGATCTCGTGGAGGGAGAAAGAGTGT
TTGCAATTTTCAAGCACGAGAAACATGTAAAGCACTATCCTGCCACAATT
TTAAAAATCAAAGGCAGAAAGAGTAAGTGTATCATTGTAATTATACCGTC
AATTCAGACCTTTTTTAGACAAAAAAGTATTCATACCCTCTTTTATCATG
AAAATGATTCTATGATGTGATGATACTTCAATCAAGTTATTTGTGTGTTT
GTCACTTCAAATCTTAAATTTGATGCCTAATTTTCAAGCTTTTACATAAA
GAGAACAATAAAAGAAAAATATTTGATTTTTAGAGAGATTGAATGTATAT
GTGCTTTGTGTGAAAATGGCTGGTTTTATGATTTCCGAGAAGATTGACCT
TTCCTATTAAATTGTTGGGCTTGGAATATGGTATAATAATAGTAATGATG
ATAAAACTTCTAATAATAACAAAAATACAAGCAAGAATAATCATTTTTAG
AGAGAAAGATTCCCGAGAAGAAGAAAAACAATAAGCAGGACACAAAACTC
ATTCAAGGTGAGACACCAGAAAATATGGAAGATTTCACTTGACTTAATGT
ACATAACTTTTTAGGTGAAGTCAGAATGAAAATCATTTCAGTTTCTAATG
CCTGGAATTAAATTTTAAAATAAAGTTCTACATAACATATTTTTTGTCAG
TGAAGTTGCCAGGTGTGTAGATGACATACTTTCATATTTATTTTAATCAT
TCCAGAGACTCTCTCTGCTCCTACCACACCAGGTAATTCATTTCAGTTCT
AATTCAGAACTTTTTAAGTGCTCCTCTAACCTTTTCTTTAACTTGTAGGT
TTTATTCAATTTTTACAATAAAAAGTCATACAGATGAATTCTTGACGAAA
TGTTTGAATATTCTGTAACTTCTTTTTGATAGAGCAAACAAAAACAAGGA
ACAAAAATAATGAAATGATGTACACAAACTCACTACCAGGTGCCTCATCT
TCATCACCACTTAGAAAACGTAAGAGCTTTATTTGTTCTTTGTCTTTATA
TAATACAATTCATTATTATATTGTAATAATTTGAAAGTAGTTATAAGCAA
AGTCTTGATAGGTTCTTTTCACATCAACTTCCACCAGAGCAACAAAACAA
CTTGAGAAGAAAGAAGGCAGCAGAGAAACGACAACAAGAAGAAGACGAGA
TTGAGAAGGAGATCCAACTCAGGATGTCTGATGAAAACAAAGGTAAATGT
TATAATGGGAATTGAATTTAAATCCAAGGAACTTTTCTGTAGTAAGTTAC
TATACTAATATATATTCCTTTTATTTTATTTTATTTTTAAGGTCTTGATG
GAATGTTTCAATCAAAAAGTCATTTACAGGTGTTGCAAGGTATGTACAAG
GTGATCTTGATCCTGGAGTGAAATGAGGAATAATGTCAACCCCAGGATGA
AACTCTTTTCGACCGGCGTCAAAATTAGGCAAAATCTGACATATTTGAAC
AAAGTAGCATTTCTTCCAAGAATGATTGGGAAAAATTGCTAGGTAGGAAA
TTTAAATGCTAGGGTGAAAAGTTCAATTTTGATCTGTTCTGCAAAATGCC
CTGCGACGCCAGTTTTGGTCCATCATACATAGGCTAGGGCTGTGAAATTA
TGCAGCGATATGATAAAGCTGCGGAATTTTGCAGCGTTGCGGAGCTATGG
ACAACGGCGCTAAAAAATGCGAAATTTCGCAACGTTGCGGATCTATGCAA
TTTCCCGAATAACTGAATGTAACTGAACACAATCGAATAATTGCGTTTGA
CAATACACCTTATCGGAAATTCCACAAAAACAATTGCGCTAAAATGGATC
CGTTGAAATTGGGAGGTAAACATAAATGGTAGCAAGAGTAGCGCCAAAAG
TTCCTGCGTAAAACAAGAACTCATTTGCTTATATCTGGCTTTTTTATATG
TTCCTAAAAATACACTGAATTTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040394XLOC_040394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064419-exon-scaffold_414-1575043694:67655..70361TCONS_00064419-exon-scaffold_414-1575043694:67655..70361Clytia hemisphaericaexon
TCONS_00064419-exon-scaffold_414-1575043694:66235..67279TCONS_00064419-exon-scaffold_414-1575043694:66235..67279Clytia hemisphaericaexon
TCONS_00064419-exon-scaffold_414-1510915933:67655..70361TCONS_00064419-exon-scaffold_414-1510915933:67655..70361Clytia hemisphaericaexon
TCONS_00064419-exon-scaffold_414-1510915933:66235..67279TCONS_00064419-exon-scaffold_414-1510915933:66235..67279Clytia hemisphaericaexon
TCONS_00064419-exon-scaffold_414-1491911889:67655..70361TCONS_00064419-exon-scaffold_414-1491911889:67655..70361Clytia hemisphaericaexon
TCONS_00064419-exon-scaffold_414-1491911889:66235..67279TCONS_00064419-exon-scaffold_414-1491911889:66235..67279Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:66235..70361 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0409234	0.0622367	0.220603	0.111371	0.127046	0.18427	0.308295	0.340139	0.277497	0	0.692666	0.315166	0.253665	0.147915	0.0915595	0.167884	0.158547	0.166146	0.0323248	0.0895416	0.11012	0.134796	0.0922736	0.020924	0.100168	0.605013	0.159648	0.16494	0.0558965	0.0688455
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064419 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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