TCONS_00064418 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064418
Unique NameTCONS_00064418
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064418 ID=TCONS_00064418|Name=TCONS_00064418|organism=Clytia hemisphaerica|type=transcript|length=1486bp
TTGCTGATGGTACTAAAGTGAATGTGagaatggtcatttctggaggGCTT
TTTGATCTTCCTGCTAAATGTCTTGCGCAAGAAATGGTGCAGTTCAATGG
TTATTTTGGTTGTAGTTTTTGTGAGATAAAGGGTGAACAAGCAACATCAA
ATGGCAAGAAGAAAGGGTCAAAAACTGTGTTTCCCTTGAATAAAGATTGC
ATACCAAAATTAAGACAAGAAGACAGAACAATAGTTCAAGCTATACTTGC
TCTGGGACGAAATAAAACAattttcgggATAAAAGGATGTTCTATTTTGG
CAGAGTTACCTTATTTGAACATCATCTGGAACTTTCCATTCGATTACATG
CATGGTGTGTTTTTGGGTGTCTCAAAAACTTTAGCAAACCTGTGGTTTGA
TTCATCAAACTCAAAAAATCCATGGTATCTTGGAGGGATGAGCAACATTG
TTGAAAATCGACTCGTTGCAATAAAACCACCCGATGAAATTACAAGACTT
CCTAGAAGTATTATCAATCACCGTGGCTATTACAAAGCTAACGAGTATCG
CAACTGGTTATTCTTCTATGCACCTATTATCCTACAAGATGTTTTGCCAG
AACCGTACTATAGCCATTTTCTTCTCCTATCAAACGCAATGTTCATTTTA
CAAGAGGAGGAGTTGCCACCAACAAAAATTAGATGAGTCAGAAAGGATGC
TattcaaatttgttgaaagaatgGATAAAGTGTACGGGAAGTCAGCAGAT
TATAATAGTTCTTGGattatCTCATCAACCAATGTACGTCTGCGAATCCC
TGAGATTGCATCATCGCTAGTCGAAGGGTCTCCAGAATATCAATATTATC
ACACACTTTCATTAACCAGAACTGAAGCAAAAGCTGCTAAGACATCCTAT
GGACCATTCAAAACTCTTGATGCATTAGACCTAAAGTACATTGATAATAC
GAGTTTAATAAGACAAGGGGACATGCTTACAAAGTATGATAAATATCAAA
ATCGCTTCAATACATTCAAGTCTGAAAGTTATACACGATCCACAAGGAGG
GCCAATTTTGCAGTAATGGTTGAATTCAATGGTCTTTTGATTCCTGCTAT
TATTAAGTTTTTCATACAAGTAAATAGAGGGGAACGTAACCTTGCTGTCC
TCAACGTTTTAAAGTACTCTTCTAAAAGTTATGTGGGCAAGTAGAAGaat
acaaattcaaagttcAGCACATAAAATGCCTATTTAGAACAGATGAATGT
ATCGTTGTAGATGTTAACTGCATTAAGAAAAAAcagatttccattttttt
ggaTAAACATATTTACTTTTCAGATTTTGTCAATAGATATGAGAGTGACT
AGCTACCAGCCTAATATGATTTTTGGGTAACCTAATCATGAGGATTTTTT
ATATTAATAGTATTGTAAAGGATAAAATAATTAGTTTATATTATGTGAAG
CTCTTGTTGTCGCGCTCAGGTTTTCAAGATTGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_414:85431..89228+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064418 ID=TCONS_00064418|Name=TCONS_00064418|organism=Clytia hemisphaerica|type=transcript|length=3798bp|location=Sequence derived from alignment at scaffold_414:85431..89228+ (Clytia hemisphaerica)
TTGCTGATGGTACTAAAGTGAATGTGagaatggtcatttctggaggGCTT
TTTGATCTTCCTGGTATGTGATATTATTAATATGATTGATATGTTGTTTT
AGAAAATAGTAAACTATGAGTTATTAATATTTTAAGACTTAGAACATGTT
TAAACTTTTATAATCATACAGGAAAATCTGATCGAGGCTCAATATGAAgc
aaagtttcatttttaggCTAAGCTAATGCTTATTTAAATGCTTTACTTCA
AACTTTAGTTTAAGGGGGCTCACAGTCACAAACAGCTTTATTATATAAAG
TTCTAAAAAGAGTAAAAGTTATGTATACAGAAAAGCTACTCAATTTCATT
CCATTTCAGCTTAGAGATACTGTATGCTAAGCATAGTCTCAGCATGCTTA
AGTCATGCTCTATAAAAAGGGAGAATTTGTCAAACTAacaagattcatgt
aataattTCATGTTTAAATATTGTATAGCTTAGTTTTACAGGCTTTTATG
gtgttaaaatttttgttgttgttccttTTAGCTAAATGTCTTGCGCAAGA
AATGGTGCAGTTCAATGGTTATTTTGGTTGTAGTTTTTGTGAGATAAAGG
GTGAACAAGCAACATCAAATGGCAAGAAGAAAGGGTCAAAAACTGTGTTT
CCCTTGAATAAAGATTGCATACCAAAATTAAGACAAGAAGACAGAACAAT
AGTTCAAGCTATACTTGCTCTGGGACGAAATAAAACAGTAATTCTTCAAC
CTATTAATCCTAAGaagttcatttgtttttctaaaaataatttttacaaa
CACTAAATTTCGTAAATATTTCATCTGTTACAAAACCTTTTAAATTCTtc
tcttttttaagattttcgggATAAAAGGATGTTCTATTTTGGCAGAGTTA
CCTTATTTGAACATCATCTGGAACTTTCCATTCGATTACATGCATGGTGT
GTTTTTGGGTGTCTCAAAGTAAGTTGAATATATTATTATGACCTAACTTA
AGGAAGACTTTTATCCAGCATTGCCTAATGATGAGTGAACACGATTGCTG
ACTTATATGCTGTAAAGGGTAGACTAAAAGGTTTGCTCGCTAAGCTACAC
CAGATGTGagatatatttttaaaagaaaatttgcgAAACTTATcagactg
aaattccaaaattctttcaaaattaattttcccCTATTTTTGAAATTCAC
AACAACAATATGTTTGATGTTAccctttttttcttattctagAACTTTAG
CAAACCTGTGGTTTGATTCATCAAACTCAAAAAATCCATGGTATCTTGGA
GGGATGAGCAACATTGTTGAAAATCGACTCGTTGCAATAAAACCACCCGA
TGAAATTACAAGACTTCCTAGAAGTATTATCAATCACCGTGGCTATTACA
AAGGTATGGGCACTTAATTTCGGTACTTCTTGTTCTATTTTAATAtgtat
aattttttagaaatattattAAGAAAACATTACAATTTTAGCTAACGAGT
ATCGCAACTGGTTATTCTTCTATGCACCTATTATCCTACAAGATGTTTTG
CCAGAACCGTACTATAGGTATTTTGTtactcattcttttttttttcaatt
ctgaGGGTTTTTGTTTAATCTtaaaataattgaaacttaGAAATAGACCC
GGTTTTcagattttcagaattttgCTCTATTTCATTCAAGCCATTTTCTT
CTCCTATCAAACGCAATGTTCATTTTACAAGAGGAGGAGTTGCCACCAAC
AAAAATTAGATGAGTCAGAAAGGATGCTattcaaatttgttgaaagaatg
GATAAAGTGTACGGGAAGTCAGCAGATTATAATAGTTCTTGGGTAAAGTG
ACTTTTCACAAACTGTTTATTTTCATCTTATCTCCCTCTTAAATGTAACA
ACGATAATTACAATCATTCTTAACCTAAGCTCGTGGCTTTTTTTCCATAG
ATAAAGCTGCTTGTAAATCCAATGTACATATATTACATTACCCAGAGCAG
GTCAGATGGAACGGACCTCTATGGGCCTCAATGTCAGGTTTCACGTACGA
AAATTGGAATGGAGAGTTTAAATTCCTGTTTCACGGAACGCAAAACATAG
ATAAACAGGTTATTAAATTTTCTTGgtaattctttaaaagtaacATAAGT
AAGTAAGAGTAAGATAATGAGCTTAGTTTAttgtaaatttgtttgtttat
gatattttcagattatCTCATCAACCAATGTACGTCTGCGAATCCCTGAG
ATTGCATCATCGCTAGTCGAAGGGTCTCCAGAATATCAATATTATCACAC
ACTTTCATTAACCAGGTAATTAAAGTGATCCTAATGGCAATGGTCTATTT
TTTGATTTCACCAATTATCTTGGATATACCTCATGCTTACATGGTTATCA
TACTCATAAAACTTTGATTTTCACAAAATAACCACACTAGATTAAATTTC
CACAAAGTCGATAATGTTGTTTgcaaaatcataattttaaaatgAGGGAT
TTTCAGATTCTCATAATAACTAGATGTAGAACATCTAAAAAtcttatcaa
tttttttgtagaaacagtttatcaaatatttcaactccaaacatccaaaa
tattttatgaatGTCTTTAGTTTAAACTTGATTCAATTTTAGAACTGAAG
CAAAAGCTGCTAAGACATCCTATGGACCATTCAAAACTCTTGATGCATTA
GACCTAAAGTACATTGATAATACGAGTTTAATAAGACAAGGGTATGTACA
TGTTTTATTGTAGGAATAAGGTTTTTAGGTATAACGATGCTCGGCTTTTT
AAGTGTTCAAATTCAAGTCAGTCCAGAAAATATTTCTTGCAAGATTTGGA
CATACAATGTTCTAATGTTTCACTCAATACTTTTGCATTTGATTCAGGGA
CATGCTTACAAAGTATGATAAATATCAAAATCGCTTCAATACATTCAAGT
CTGAAAGTTATACACGATCCACAAGGAGGGCCAATTTTGCAGTAATGGTT
GAATTCAATGGTCTTTTGATTCCTGCTATTATTAAGTTTTTCATACAAGT
AAGCAATTATGAACATTATCCATTAACCACTATCTATTGTTAATATGTAA
TCTGTCACTAAAATTTCTTATTTCGTTTTTATATACTCCCAGTTTTATAA
ACTTTGTATTTTCTTTACCTTCTATGATTTTTTAGTAGAAAATTCAACTT
GAGTTCTAATAAAATTGCTTTGCATTTTATTCTCTCTTTTTCAGGTAAAT
AGAGGGGAACGTAACCTTGCTGTCCTCAACGTTTTAAAGTACTCTTCTAA
AAGTTATGTGGGCAAGTAGAAGaatacaaattcaaagttcAGCACATAAA
ATGCCTATTTAGGTAAGcttttcagtgaaatcttttggttttttctTTCA
ACTAATTTTATTCCGTATTTTATAATGGTCTTGGTTTTGGTCTTTCAATC
TTGCAATCTTTAAAacagatttatttttgaatgtGAATAATAACTAATTG
AACAGCTGGACTGTTTGATATGACAATTGATTACTTCTTTCAATTTCAGA
ACAGATGAATGTATCGTTGTAGATGTTAACTGCATTAAGAAAAAAcagat
ttccatttttttggaTAAACATATTTACTTTTCAGATTTTGTCAATAGAT
ATGAGAGTGACTAGCTACCAGCCTAATATGATTTTTGGGTAACCTAATCA
TGAGGATTTTTTATATTAATAGTATTGTAAAGGATAAAATAATTAGTTTA
TATTATGTGAAGCTCTTGTTGTCGCGCTCAGGTTTTCAAGATTGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040393XLOC_040393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064418-exon-scaffold_414-1491911889:85431..85493TCONS_00064418-exon-scaffold_414-1491911889:85431..85493Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:85431..85493TCONS_00064418-exon-scaffold_414-1510915933:85431..85493Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:85431..85493TCONS_00064418-exon-scaffold_414-1575043694:85431..85493Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:85962..86167TCONS_00064418-exon-scaffold_414-1491911889:85962..86167Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:85962..86167TCONS_00064418-exon-scaffold_414-1510915933:85962..86167Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:85962..86167TCONS_00064418-exon-scaffold_414-1575043694:85962..86167Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:86292..86398TCONS_00064418-exon-scaffold_414-1491911889:86292..86398Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:86292..86398TCONS_00064418-exon-scaffold_414-1510915933:86292..86398Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:86292..86398TCONS_00064418-exon-scaffold_414-1575043694:86292..86398Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:86673..86833TCONS_00064418-exon-scaffold_414-1491911889:86673..86833Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:86673..86833TCONS_00064418-exon-scaffold_414-1510915933:86673..86833Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:86673..86833TCONS_00064418-exon-scaffold_414-1575043694:86673..86833Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:86922..86997TCONS_00064418-exon-scaffold_414-1491911889:86922..86997Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:86922..86997TCONS_00064418-exon-scaffold_414-1510915933:86922..86997Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:86922..86997TCONS_00064418-exon-scaffold_414-1575043694:86922..86997Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:87121..87272TCONS_00064418-exon-scaffold_414-1491911889:87121..87272Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:87121..87272TCONS_00064418-exon-scaffold_414-1510915933:87121..87272Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:87121..87272TCONS_00064418-exon-scaffold_414-1575043694:87121..87272Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:87642..87745TCONS_00064418-exon-scaffold_414-1491911889:87642..87745Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:87642..87745TCONS_00064418-exon-scaffold_414-1510915933:87642..87745Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:87642..87745TCONS_00064418-exon-scaffold_414-1575043694:87642..87745Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:88073..88171TCONS_00064418-exon-scaffold_414-1491911889:88073..88171Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:88073..88171TCONS_00064418-exon-scaffold_414-1510915933:88073..88171Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:88073..88171TCONS_00064418-exon-scaffold_414-1575043694:88073..88171Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:88328..88478TCONS_00064418-exon-scaffold_414-1491911889:88328..88478Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:88328..88478TCONS_00064418-exon-scaffold_414-1510915933:88328..88478Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:88328..88478TCONS_00064418-exon-scaffold_414-1575043694:88328..88478Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:88675..88792TCONS_00064418-exon-scaffold_414-1491911889:88675..88792Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:88675..88792TCONS_00064418-exon-scaffold_414-1510915933:88675..88792Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:88675..88792TCONS_00064418-exon-scaffold_414-1575043694:88675..88792Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1491911889:88980..89228TCONS_00064418-exon-scaffold_414-1491911889:88980..89228Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1510915933:88980..89228TCONS_00064418-exon-scaffold_414-1510915933:88980..89228Clytia hemisphaericaexon
TCONS_00064418-exon-scaffold_414-1575043694:88980..89228TCONS_00064418-exon-scaffold_414-1575043694:88980..89228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_414supercontigscaffold_414:85431..89228 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0615502	0.243782	0.486304	0.167612	0.166548	0	0	0	0	0	1.85931	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0406558	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064418 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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