TCONS_00064401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064401
Unique NameTCONS_00064401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3162

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064401 ID=TCONS_00064401|Name=TCONS_00064401|organism=Clytia hemisphaerica|type=transcript|length=3162bp
AGAATTGGTAACCTAGCGCAGCTGCAGAGAAACATTATGATCGCAATATA
ATATGGTCACAGGATGTGCCTGACCTCAAAGTTGTATaaagttttaaatt
caaatggGGGATTGTTTTTCATCAGCCAGTACTTATTGCTACTGGGAGAG
ACCTATATTTTTTTGTTCCAGTGGTTAAATCAATAaaactctatttttct
tttagtttcACATCAATCATATCCAACTCGGTTGCTCAAGATATTACATT
TGGCATTGACTTTCCTCAAAAGAATACCCCACATGATGAAATAAAACCCA
GTTTACTCATAGTTTTACGTAATGAAGTCAAGAGTGGTCATCTCCAGATA
TCGAATTCTGTCCTTACGTGATGAAAATGGAAACCCTCGCTAGTCTTGGA
TTTTACGTAATAGCATGCAGAATCATTAGTGTTCATGGAGCCCTGCTAAG
CTGTGGTTTTACGTAATGTGGAGCTGTAAGCCTTCATCTTCACTTATATC
AAACCTTATGTGATGGAAAGTGAATCCATGGCTACTTCATGACTTTATGC
AATAGCAGAGATGTAGAGTTTCCAATACTCACTCATCCTCGCATGATGAA
ATTTGAAACCATAATCTGTGACTTTACCCAATCATAGTGATAATTTTTAC
CGTATCCAATACTGGACCTTGCATGATAGAGAGACTCTGGCTAGTCTTTG
GTTTTACGCAACAGTATGTGGAGTTGTAAGCGATCATTTCTATTATCGTA
AGCTTTCATGATGGAAAGTGAAACCCTGGATAGTTTGATTTTACGCAATC
GTATGGTGGAGTTGCAAGTGATCATTTCTAATATCCGATATGCATCCTTT
CATGAAGGAGAACGAAACCCCGGTTAGTCTGCGATTTTACGCAATGTATG
TGGAGTTGTAAACGATTAATTTTAATATTCAATATCCAACCTTTCATGAT
GGAAAGTGAAACCCGGTTAGTCTGTGATTTTATGCAATCGTATGGTGGAG
TTGTAAGCAATCATTTCTAATATCCGATATCCCATCTCACACGATAAAGA
GCAAAACCTGTGATGGTGGAGTTGTAAGCGATCATTCTAATATCTGATAT
CCAATCTCATCACACGATGGAAAGCGAGATCATGATATTCCAGCCCTCTA
CTACGCTATGGAAGGTGAAATCCTGATTAATTTACGGAGTAGTGAATGGA
GTCATAAGCATTCATAGACAGAGACCCAATCCTGCTTGAACGAATGAATA
GATTATCTGGAAGCTTAAATTAGGCAGCAACTGTCAGCTTCGCTGtgaca
aatattaaaaataatttatttttagctgatttttttcttctttactgagt
attttttttttcttacacaaataagaaaaataacattgttttttataaaa
atttcaatttcattattaattttttctcaACAAAGTAGAACTTCAAGACA
TACTGTTTGCCTCACTCATTGAAAGTTATACTTTCGGCAGTTTTATTTTG
TATGGCGATTTTTGGATTTCATCCGTTTTCTAAATTACATATTCTATCAT
acacaaaaaattacattttataatcttataaattttttatataaatatga
atattaaatgattatataattttttgataTTCTATAGTGTGCACCCTTCC
ACATGGGACATTAATGTTTTGGAAAGTAATCCTCCGGTGGGACGTAATTT
CTGGATTTTTGGTGGGGAAAAACGGATTAATTTGGGTgagactttttgat
aaaatcttggATTTGAAGAACTTCTTTCAATGCAGCTCCCTAAAAAACAC
AAAGCACATCTTAGCTCTAAAAGGTACCAACAATCAACCATTGTTCATCA
GCTTTTTGAATGCAATGCGGTCATAGGTCATATAAATTCATAACTTGGAA
CACACTCTGATTTTCCTCCTGAAAAAAGTATCAGTTAAttccggtctcca
cttgcgcacgCTATGATTGCACTTTTCAAGCAAAAGCTTTCACGTTATTG
GTCATGTGGCAGTctaaaatagcactttttaatactttttttcaAGCATG
TACAACTCTTTATGATGTTATtcttttctccaagcaaaaatttttaaaga
attgaAGCCGAAAGTCATGATCGCAGCATACGCAAGTGGAGAACGGTCTT
CAGCAACAATCTAGactttgagtttatagctatactTTTTCTGCATAAAA
CTGTTTCTGTTAAGTTTTCGTGATTTCGCGCTCCTcttcgaaaataatga
aaatgctAGATCTATTCATCGGctgtaaatttaaaaaagtcaaattttgc
ttcacttttttttgcaggAGAAAGCTTatagttgcctatctagcccttcg
agcaGAGAAACGAGATGGAGTAGAAACCAGCTTATTTGATCAACCAACGT
TTTATGAACGTTTCTATTGAAAACGCCTTTGTTTTAGCTTCGTCGTTAGA
AAAAGTTCAAGAAATGACGGCTcttcctaaaatttggctagTTTCTAAAT
GAACATGATCATAAAAATGAATAGACGCTTTTCGTTTTGACTGATTACTT
TCTACACTTTCAGTACGAAGTAGCAAGTTCTACACCATTTTGTTGCctga
aaaattctcatcacaATAATGATAAGTTGTTTCGACAAAATTTGGTACAG
GTAGAGCTTCGGGAAAAGCAGAAAACATAATTTATTTACTTTCTTGTATT
CAGGCTTTTTATCTGATGATACGGTTATATcattagaatcgctaggaaac
tCTGAACAAGAAAATACAGGAACTTTTGGTCTTAGCGAGGTTCACCCAAT
ATAGTTTACGCATAATTAGACTcagaacaaaagaattttgtcacgcCATG
CTAATAATGCGGATTTTTTGaggcaacaacaaaagaaatccattaacgga
aacaaactcccttaaggTTAAGGGCAAAGGACCTGGTATAGGAGGAGCTg
taattccattgttttcaagaagctgttatCCATCTCTTTACACTCCTCTG
CCTCgagctttacagatctgtggctCGGACTCAAAATTCTAGGTGGGACA
TTGaaccccttgcacactatgaatataactaagttttttaaatgtatatt
tgtatatattcttaatttctttttgCCAGTTAACTAGGGTCCTGGTAAAA
TATATATCGACA
Run BLAST on NCBI

transcript from alignment at scaffold_413:122611..125772+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064401 ID=TCONS_00064401|Name=TCONS_00064401|organism=Clytia hemisphaerica|type=transcript|length=3162bp|location=Sequence derived from alignment at scaffold_413:122611..125772+ (Clytia hemisphaerica)
AGAATTGGTAACCTAGCGCAGCTGCAGAGAAACATTATGATCGCAATATA
ATATGGTCACAGGATGTGCCTGACCTCAAAGTTGTATaaagttttaaatt
caaatggGGGATTGTTTTTCATCAGCCAGTACTTATTGCTACTGGGAGAG
ACCTATATTTTTTTGTTCCAGTGGTTAAATCAATAaaactctatttttct
tttagtttcACATCAATCATATCCAACTCGGTTGCTCAAGATATTACATT
TGGCATTGACTTTCCTCAAAAGAATACCCCACATGATGAAATAAAACCCA
GTTTACTCATAGTTTTACGTAATGAAGTCAAGAGTGGTCATCTCCAGATA
TCGAATTCTGTCCTTACGTGATGAAAATGGAAACCCTCGCTAGTCTTGGA
TTTTACGTAATAGCATGCAGAATCATTAGTGTTCATGGAGCCCTGCTAAG
CTGTGGTTTTACGTAATGTGGAGCTGTAAGCCTTCATCTTCACTTATATC
AAACCTTATGTGATGGAAAGTGAATCCATGGCTACTTCATGACTTTATGC
AATAGCAGAGATGTAGAGTTTCCAATACTCACTCATCCTCGCATGATGAA
ATTTGAAACCATAATCTGTGACTTTACCCAATCATAGTGATAATTTTTAC
CGTATCCAATACTGGACCTTGCATGATAGAGAGACTCTGGCTAGTCTTTG
GTTTTACGCAACAGTATGTGGAGTTGTAAGCGATCATTTCTATTATCGTA
AGCTTTCATGATGGAAAGTGAAACCCTGGATAGTTTGATTTTACGCAATC
GTATGGTGGAGTTGCAAGTGATCATTTCTAATATCCGATATGCATCCTTT
CATGAAGGAGAACGAAACCCCGGTTAGTCTGCGATTTTACGCAATGTATG
TGGAGTTGTAAACGATTAATTTTAATATTCAATATCCAACCTTTCATGAT
GGAAAGTGAAACCCGGTTAGTCTGTGATTTTATGCAATCGTATGGTGGAG
TTGTAAGCAATCATTTCTAATATCCGATATCCCATCTCACACGATAAAGA
GCAAAACCTGTGATGGTGGAGTTGTAAGCGATCATTCTAATATCTGATAT
CCAATCTCATCACACGATGGAAAGCGAGATCATGATATTCCAGCCCTCTA
CTACGCTATGGAAGGTGAAATCCTGATTAATTTACGGAGTAGTGAATGGA
GTCATAAGCATTCATAGACAGAGACCCAATCCTGCTTGAACGAATGAATA
GATTATCTGGAAGCTTAAATTAGGCAGCAACTGTCAGCTTCGCTGtgaca
aatattaaaaataatttatttttagctgatttttttcttctttactgagt
attttttttttcttacacaaataagaaaaataacattgttttttataaaa
atttcaatttcattattaattttttctcaACAAAGTAGAACTTCAAGACA
TACTGTTTGCCTCACTCATTGAAAGTTATACTTTCGGCAGTTTTATTTTG
TATGGCGATTTTTGGATTTCATCCGTTTTCTAAATTACATATTCTATCAT
acacaaaaaattacattttataatcttataaattttttatataaatatga
atattaaatgattatataattttttgataTTCTATAGTGTGCACCCTTCC
ACATGGGACATTAATGTTTTGGAAAGTAATCCTCCGGTGGGACGTAATTT
CTGGATTTTTGGTGGGGAAAAACGGATTAATTTGGGTgagactttttgat
aaaatcttggATTTGAAGAACTTCTTTCAATGCAGCTCCCTAAAAAACAC
AAAGCACATCTTAGCTCTAAAAGGTACCAACAATCAACCATTGTTCATCA
GCTTTTTGAATGCAATGCGGTCATAGGTCATATAAATTCATAACTTGGAA
CACACTCTGATTTTCCTCCTGAAAAAAGTATCAGTTAAttccggtctcca
cttgcgcacgCTATGATTGCACTTTTCAAGCAAAAGCTTTCACGTTATTG
GTCATGTGGCAGTctaaaatagcactttttaatactttttttcaAGCATG
TACAACTCTTTATGATGTTATtcttttctccaagcaaaaatttttaaaga
attgaAGCCGAAAGTCATGATCGCAGCATACGCAAGTGGAGAACGGTCTT
CAGCAACAATCTAGactttgagtttatagctatactTTTTCTGCATAAAA
CTGTTTCTGTTAAGTTTTCGTGATTTCGCGCTCCTcttcgaaaataatga
aaatgctAGATCTATTCATCGGctgtaaatttaaaaaagtcaaattttgc
ttcacttttttttgcaggAGAAAGCTTatagttgcctatctagcccttcg
agcaGAGAAACGAGATGGAGTAGAAACCAGCTTATTTGATCAACCAACGT
TTTATGAACGTTTCTATTGAAAACGCCTTTGTTTTAGCTTCGTCGTTAGA
AAAAGTTCAAGAAATGACGGCTcttcctaaaatttggctagTTTCTAAAT
GAACATGATCATAAAAATGAATAGACGCTTTTCGTTTTGACTGATTACTT
TCTACACTTTCAGTACGAAGTAGCAAGTTCTACACCATTTTGTTGCctga
aaaattctcatcacaATAATGATAAGTTGTTTCGACAAAATTTGGTACAG
GTAGAGCTTCGGGAAAAGCAGAAAACATAATTTATTTACTTTCTTGTATT
CAGGCTTTTTATCTGATGATACGGTTATATcattagaatcgctaggaaac
tCTGAACAAGAAAATACAGGAACTTTTGGTCTTAGCGAGGTTCACCCAAT
ATAGTTTACGCATAATTAGACTcagaacaaaagaattttgtcacgcCATG
CTAATAATGCGGATTTTTTGaggcaacaacaaaagaaatccattaacgga
aacaaactcccttaaggTTAAGGGCAAAGGACCTGGTATAGGAGGAGCTg
taattccattgttttcaagaagctgttatCCATCTCTTTACACTCCTCTG
CCTCgagctttacagatctgtggctCGGACTCAAAATTCTAGGTGGGACA
TTGaaccccttgcacactatgaatataactaagttttttaaatgtatatt
tgtatatattcttaatttctttttgCCAGTTAACTAGGGTCCTGGTAAAA
TATATATCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040381XLOC_040381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064401-exon-scaffold_413-1491911889:122611..125772TCONS_00064401-exon-scaffold_413-1491911889:122611..125772Clytia hemisphaericaexon
TCONS_00064401-exon-scaffold_413-1510915933:122611..125772TCONS_00064401-exon-scaffold_413-1510915933:122611..125772Clytia hemisphaericaexon
TCONS_00064401-exon-scaffold_413-1575043694:122611..125772TCONS_00064401-exon-scaffold_413-1575043694:122611..125772Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_413supercontigscaffold_413:122611..125772 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.518146	0	0	0.71812	0	0	1.67158	0.258116	0	0	0	0	0	0	0	0	0	0	0	1.56093e-09	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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