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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064397 ID=TCONS_00064397|Name=TCONS_00064397|organism=Clytia hemisphaerica|type=transcript|length=1569bp
tgttttgtaaattagTTCATTATCCTTTTATGTCACTCTCCTTGGATATT
GCATCTTTTGTGTGTTGGTCTTCTCCTGTGTTTGTACGGTTAAGTACTTT
TATTATAGTAATTATCCTTTGTATATAGTATTCTCAAATGTATTTGTCAT
GTTCCTAGGCTATTATTGAGCTAGAATGTGAAAATGTATAAAATGTGTTG
TGAAATTTGTAGAAGCTTGTGTAGTGTTTATGTGACGTGATGTGATGTAG
TGTTGTGCCACAGTGTTTTACGTCTTCGTTATGTCAAAGAAGTCAGTAAA
CACAGCACCTCACTAATGGTCATTCTTTTTTGGGACCGTTAAAGTAAAAC
ACTATTCAACATGTCACTTCACAGTAATTAAATATTGGAAGCTGCCACCT
TCGATTCGACAGCAACATGGATTCATCCAGATCGTTAAGAAGGACATATA
CCGAAAGTAATGAGTTTTGGATAGAGGAAACTATCAAGAAGTTAATTCCT
TTTTGGTCCGAGGCGTTCCTGGCGATGTCAAGTCAAAAGTCAGCAACTGC
AGTGTATTCTTGCAATTTAATGAGCAGAGAACTGAGAACTGAATATGAAG
CATACTGTGCCAAGTTAGAAATCAAACGTCGAAATTGGGAGAGACAATAT
GATCTCCTGTACGAAAAACGAAAGCGTGAATTGCAGCTACAAATCGAAAA
ACATGAAGCAAAATTGGAAAGACTGGAGGAGGAGCTGAGAAAACGAAAAT
TGTTGAAGTCTCAAAGGAAAACTAATCGCAATGGTAAGTCAGTCGCCAAG
AATGAGTCGAGCGTCAGTAGAGAGCCGTTGCATGTAGAGTCGTTTCATAT
TGATGATTCATTTGTCGTTGAAAAGCCATCCTTCGTTAAAGAGTCTTTGA
TTGCTATAAGGTTGTTCGTCAATGAAGATCTGTCACAAGTATTGTTCGAA
GCAGAGCCAATAAATGATGTTCCCATAGTTTCGTCTCGCGTCGTTGTAGA
GCCAATGCACACTGTCATCGTGGAGCCAATTCAAGTTTCTGTTATAGAGT
CGATTCCCGTGGTTGAAGAGCTGATTGAAGTTGTAGTCGAGCTGAAACGT
GCAGTTATCGTCGAGCCGTTGCACACTATTGTCGTGGAACCAATCCGCAT
GGAATGTTTCAGCCTTGTCATTGAATCAAACTTGTCATTTGTTAAAGAAC
CGTATTTTCCAGCTGGTTTGGAGGTAACGCAACGTGAACCTGTTATCGAA
TTGAACGATTCCAAAATCCACGAATGTTCAATTGTTCATGATATGATTGA
AAAGTTGTTATTGATACTTGTTTTGCAATTAGCCAATAAATGGAAAAGTG
TTCAGATGAACTTTTATGGCCTTTGTGATTTTGATTTACGGTATGGAACA
TTGAGATTATTTGGTTTtctgattttcagattttggtCAAGCAATATGTC
ACTATACTTGACGGTGGGGAGTGTAACTACCTTTTAGAGGCACTTTAAAT
CTGTGTtatgttttattgttttgtaaattagTTCATTATCCTTTTATGTC
ACTCTCCTTGGATATTGCA Run BLAST on NCBI protein sequence of TCONS_00064397-protein >TCONS_00064397-protein ID=TCONS_00064397-protein|Name=TCONS_00064397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MDSSRSLRRTYTESNEFWIEETIKKLIPFWSEAFLAMSSQKSATAVYSCN
LMSRELRTEYEAYCAKLEIKRRNWERQYDLLYEKRKRELQLQIEKHEAKL
ERLEEELRKRKLLKSQRKTNRNGKSVAKNESSVSREPLHVESFHIDDSFV
VEKPSFVKESLIAIRLFVNEDLSQVLFEAEPINDVPIVSSRVVVEPMHTV
IVEPIQVSVIESIPVVEELIEVVVELKRAVIVEPLHTIVVEPIRMECFSL
VIESNLSFVKEPYFPAGLEVTQREPVIELNDSKIHECSIVHDMIEKLLLI
LVLQLANKWKSVQMNFYGLCDFDLRYGTLRLFGFLIFRFWSSNMSLYLTV
GSVTTF Run BLAST on NCBI transcript from alignment at scaffold_413:47555..49265+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064397 ID=TCONS_00064397|Name=TCONS_00064397|organism=Clytia hemisphaerica|type=transcript|length=1711bp|location=Sequence derived from alignment at scaffold_413:47555..49265+ (Clytia hemisphaerica)
tgttttgtaaattagTTCATTATCCTTTTATGTCACTCTCCTTGGATATT
GCATCTTTTGTGTGTTGGTCTTCTCCTGTGTTTGTACGGTTAAGTACTTT
TATTATAGTAATTATCCTTTGTATATAGTATTCTCAAATGTATTTGTCAT
GTTCCTAGGCTATTATTGAGCTAGAATGTGAAAATGTATAAAATGTGTTG
TGAAATTTGTAGAAGCTTGTGTAGTGTTTATGTGACGTGATGTGATGTAG
TGTTGTGCCACAGTGTTTTACGTCTTCGTTATGTCAAAGAAGTCAGTAAA
CACAGCACCTCACTAATGGTCATTCTTTTTTGGGACCGTTAAAGTAAAAC
ACTATTCAACATGTCACTTCACAGTAATTAAATATTGGAAGCTGCCACCT
TCGATTCGACAGCAACATGGATTCATCCAGATCGTTAAGAAGGACATATA
CCGAAAGTAATGAGTTTTGGATAGAGGAAACTATCAAGAAGTTAATTCCT
TTTTGGTCCGAGGCGTTCCTGGCGATGTCAAGTCAAAAGTCAGCAACTGC
AGTGTATTCTTGCAATTTAATGAGCAGAGAACTGAGAACTGAATATGAAG
CATACTGTGCCAAGTTAGAAATCAAACGTCGAAATTGGGAGAGACAATAT
GATCTCCTGTACGAAAAACGAAAGCGTGAATTGCAGCTACAAATCGAAAA
ACATGAAGCAAAATTGGAAAGACTGGAGGAGGAGCTGAGAAAACGAAAAT
TGTTGAAGTCTCAAAGGAAAACTAATCGCAATGGTAAGTCAGTCGCCAAG
AATGAGTCGAGCGTCAGTAGAGAGCCGTTGCATGTAGAGTCGTTTCATAT
TGATGATTCATTTGTCGTTGAAAAGCCATCCTTCGTTAAAGAGTCTTTGA
TTGCTATAAGGTTGTTCGTCAATGAAGATCTGTCACAAGTATTGTTCGAA
GCAGAGCCAATAAATGATGTTCCCATAGTTTCGTCTCGCGTCGTTGTAGA
GCCAATGCACACTGTCATCGTGGAGCCAATTCAAGTTTCTGTTATAGAGT
CGATTCCCGTGGTTGAAGAGCTGATTGAAGTTGTAGTCGAGCTGAAACGT
GCAGTTATCGTCGAGCCGTTGCACACTATTGTCGTGGAACCAATCCGCAT
GGAATGTTTCAGCCTTGTCATTGAATCAAACTTGTCATTTGTTAAAGAAC
CGTATTTTCCAGCTGGTTTGGAGGTAACGCAACGTGAACCTGTTATCGAA
TTGAACGATTCCAAAATCCACGAATGTTCAATTGTTCATGATATGATTGA
AAAGTTGTTATTGATACTTGTTTTGCAATTAGCCAATAAATGGAAAAGTG
TTCAGATGAACTTTTATGGCCTTTGTGATTTTGATTTACGGTATGGAACA
TTGAGATTATTTGGTTTtctgattttcagattttggtCAAGCAATATGTC
ACTATACTTGACGGTGGGGAGTGTAACTACCTTTTAGAGGCAGTTTAAAT
CTGTGTtatgttttattgttttgtaaattagTTCATTATCCTTTTATGCC
ACTNaatagtttgacctccgaacagaaagagcccccccctagtacgaata
gggttaagggttGTACTAATCACCTGTAGAGGCACTTTAAATCTGTGTta
tgttttattgttttgtaaattagTTCATTATCCTTTTATGTCACTCTCCT
TGGATATTGCA Coding sequence (CDS) from alignment at scaffold_413:47555..49265+ >TCONS_00064397 ID=TCONS_00064397|Name=TCONS_00064397|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_413:47555..49265+ (Clytia hemisphaerica)
ATGGATTCATCCAGATCGTTAAGAAGGACATATACCGAAAGTAATGAGTT
TTGGATAGAGGAAACTATCAAGAAGTTAATTCCTTTTTGGTCCGAGGCGT
TCCTGGCGATGTCAAGTCAAAAGTCAGCAACTGCAGTGTATTCTTGCAAT
TTAATGAGCAGAGAACTGAGAACTGAATATGAAGCATACTGTGCCAAGTT
AGAAATCAAACGTCGAAATTGGGAGAGACAATATGATCTCCTGTACGAAA
AACGAAAGCGTGAATTGCAGCTACAAATCGAAAAACATGAAGCAAAATTG
GAAAGACTGGAGGAGGAGCTGAGAAAACGAAAATTGTTGAAGTCTCAAAG
GAAAACTAATCGCAATGGTAAGTCAGTCGCCAAGAATGAGTCGAGCGTCA
GTAGAGAGCCGTTGCATGTAGAGTCGTTTCATATTGATGATTCATTTGTC
GTTGAAAAGCCATCCTTCGTTAAAGAGTCTTTGATTGCTATAAGGTTGTT
CGTCAATGAAGATCTGTCACAAGTATTGTTCGAAGCAGAGCCAATAAATG
ATGTTCCCATAGTTTCGTCTCGCGTCGTTGTAGAGCCAATGCACACTGTC
ATCGTGGAGCCAATTCAAGTTTCTGTTATAGAGTCGATTCCCGTGGTTGA
AGAGCTGATTGAAGTTGTAGTCGAGCTGAAACGTGCAGTTATCGTCGAGC
CGTTGCACACTATTGTCGTGGAACCAATCCGCATGGAATGTTTCAGCCTT
GTCATTGAATCAAACTTGTCATTTGTTAAAGAACCGTATTTTCCAGCTGG
TTTGGAGGTAACGCAACGTGAACCTGTTATCGAATTGAACGATTCCAAAA
TCCACGAATGTTCAATTGTTCATGATATGATTGAAAAGTTGTTATTGATA
CTTGTTTTGCAATTAGCCAATAAATGGAAAAGTGTTCAGATGAACTTTTA
TGGCCTTTGTGATTTTGATTTACGGTATGGAACATTGAGATTATTTGGTT
TtctgattttcagattttggtCAAGCAATATGTCACTATACTTGACGGTG
GGGAGTGTAACTACCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064397-exon-scaffold_413-1491911889:47555..49043 | TCONS_00064397-exon-scaffold_413-1491911889:47555..49043 | Clytia hemisphaerica | exon |
| TCONS_00064397-exon-scaffold_413-1510915933:47555..49043 | TCONS_00064397-exon-scaffold_413-1510915933:47555..49043 | Clytia hemisphaerica | exon |
| TCONS_00064397-exon-scaffold_413-1575043694:47555..49043 | TCONS_00064397-exon-scaffold_413-1575043694:47555..49043 | Clytia hemisphaerica | exon |
| TCONS_00064397-exon-scaffold_413-1491911889:49186..49265 | TCONS_00064397-exon-scaffold_413-1491911889:49186..49265 | Clytia hemisphaerica | exon |
| TCONS_00064397-exon-scaffold_413-1510915933:49186..49265 | TCONS_00064397-exon-scaffold_413-1510915933:49186..49265 | Clytia hemisphaerica | exon |
| TCONS_00064397-exon-scaffold_413-1575043694:49186..49265 | TCONS_00064397-exon-scaffold_413-1575043694:49186..49265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_413 | supercontig | scaffold_413:47555..49265 + |
Blast
The following BLAST results are available for this feature:
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