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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064388 ID=TCONS_00064388|Name=TCONS_00064388|organism=Clytia hemisphaerica|type=transcript|length=2721bp
GTGCTTACAACACAAAGTGCTGAATAGACGTATAAATTATATTGACGGAA
ATTATTCACAAGAAGGAAAGAGTTATATGACAACTAAttacaatgataca
aaataatgTTTAACCCTTTTTTAACCCAATTCAATAACATCCTTTGTTCA
AAACCATTTTCCTCACTAGAGATCGCAAATAGTCTACTGTAATGAAAAAG
TTCAATAATAGTGTGACGACGAGAACAATTCGATTTTAGAGCTCGTTTGC
TGCTCACTGCATATTGATTGGGTAATAAAAGGGGTTGTATGTcagtaaaa
ttaaaatataaaaagatacaaaaattgtttgaatacaaaACTTGTTGTGT
TGATGACCATCATGACGATTTACGAGTATGAAAAATAATGGTGACCTGCT
TTAAATGAGTAGAAAACTaaaagagagaagagaaaaGAGAAATGCGAGAA
GTGAATTGACTTGAAGGTGAACTGCTGATGATGAGGGTGAGGTAACAGAT
GCTGTTGAAGTGATGGCTTGTGATGAGGATGGTGGTGTAGGTGAAATAGG
TGAGTTGGTGGGTGACATGGATGAAGAGGATGCGGCCATAGATGGAAAAG
ATGGCGTGGAAGAGATGAACGTTGTGTGAGAAGGTGCGAATGATTCAGGC
ATGGAAGTTGTTGGGGTTTGGGATTGCGAGAAAGATTGAGTTTCAGAGAA
AGAGCTTGAGAAAGAGAGCGAGGATGATTGGATATACAATGAAACTACTT
GTGACGATATGAGAGTGGTAGAAAGAAGGGGAGAAGATGATGGTGATTCA
GATGACATGAACGAAGAGGATGAAATTTCGAGTGAAGTGGAAGGTGAGAG
AGATGGTTCAGGTTGCAAGCGTGGATATTCATCTCCTTGGTAACCGATAC
AATGCCAACAGTTGAAACGATTTTCagaatcatatttctttttcaactcT
TGCAATTTCTCCAGGTGTTCTCCCCATAAAGAGTTTCGCCAATCAGGTTC
TTTCGCCCAAGCATGGTTGAATCCAGCTCCTGTATTTTTGATATTCTCTC
GCAAATAATTCGTCATTTCATCCTGGAAGGTTTCGATTTGCCAAACAGCT
TTTCTCATTGCGGGATGGACAGCCGTTTCGTCTTTGCTAGGATCCATCAC
TACACCTCCTAAGAGATAATTGAAAGTGAAAAACCCGTTTCTCACCATCC
ATTTCAAATGTTTCAAAGCTTCCTCAGGTTCGTTCACCACAAATTCACGC
GGGATTAACCGACTTGCGATATTGATCGTACGTTCTCCAGTTTTATCAGT
ATCCATTTGATAACCTCCACGAATATTGAAATAACTGTCAGCTGTCAAAA
TGTTTGTTGTGACAGCTAGTTTCTCTAGCGCAGGCAAGTCATTTTtccat
tcattgaaatcattgatGAAAGTAGTTTTAGCATCTTCTTCAGAACcgac
aaaatacaaaataagtGTGTTCAATGTCCAATAACCTCCCCAACGATTGT
CCAGATTTGGTGAGAGTTTCACCCACTCTTCCAACCAAGAATCTACAGTC
CCTGTGTAATACCAAGGGGCTCCAATGTTCGCAATGTTCATGTAAAACTC
AAGAATGGGTTCAGCTGGTCGAATCTTGTAGTGAACTGCTGTGACAACAC
CCCAAGTACCACCACCTCCGCCTCGTAGCGCCCAAAACAAGTCTGGATTA
GTACACTTATCTACGGTAACACAACTTCCATTTGCAAGGACAACGTCAAA
GTCAATAACATTATCAATTCCTATCCCATATTTGCGAGACATGGAAGACA
AGCCACATCCTTGAAGCCAGCCACCTGCTGCAGATACTGTCAATCCACCA
CCTCCAACAATATGGTATTTTGAATTCAAGGCTTTGTATACACTATTCCA
TCTTTGCCCACCACCAACTTTGACTGCATGAGTGAAAACGGTTCCGCAAG
AATCAGTGAAGTTTTGTTTGACATCATCTACAGTCTTCAAGTGTTCGGGT
AGATTGCGTGTCCAAATCAACAAAGTAGATTTCCCCATACTGGAGCCAGC
ATATGAATGACCAGATGTTTTGATTGAAACAGCAATGTTGTATTTATTGG
CAAACGCAATGGCCAGTTGTACATCACTCACAGATTTGACCTCCACACTG
TAAGCCGGGATGTTCCAGGAAGAGTTGGTTTGACAGAATTGACGTGAGCA
ATCATGATACTGCATGCAAATACCATTTCCAGTGGATGAGATGTTGAACG
CGTTGTCACCTTGTTTTTCACATTGTTCGTAATCATCTGGTGAAAGTTGA
TGAAGTGTCCCGTTCAAAGATTCATCAAAATCGTTCCATTCACTCTGACT
GGGCCAGCAAAGCGAATCAGGCTCACAATATTTCTTCTTGGAACAGAAGG
AAACATTCAGGAGAGCATAGAGCAGAAGCAGTTTTATGACAAACATCTTT
TTTCTCATAAAGGTATTGATGAAATCTTAGTTCACAAAATGATGACTGCA
GGTCAAGCACACCGAATATTAATGGAAAAAATATGATTGCTTCAGCAAGT
CTAAATACGATTAACTCAGCAATATACCCAAAATATAAATAGCTTAGCAG
TATACTTTAATACTTTTTTAAGTACAACAGAAAAGATGAGATCTGCAGGG
TTTTTTCCATAATAGAGATAAGAACTTTCTCATTCACATTCATTACATTC
CAGCTTTATTTTATCCTTGAC Run BLAST on NCBI protein sequence of TCONS_00064388-protein >TCONS_00064388-protein ID=TCONS_00064388-protein|Name=TCONS_00064388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=685bp
MRKKMFVIKLLLLYALLNVSFCSKKKYCEPDSLCWPSQSEWNDFDESLNG
TLHQLSPDDYEQCEKQGDNAFNISSTGNGICMQYHDCSRQFCQTNSSWNI
PAYSVEVKSVSDVQLAIAFANKYNIAVSIKTSGHSYAGSSMGKSTLLIWT
RNLPEHLKTVDDVKQNFTDSCGTVFTHAVKVGGGQRWNSVYKALNSKYHI
VGGGGLTVSAAGGWLQGCGLSSMSRKYGIGIDNVIDFDVVLANGSCVTVD
KCTNPDLFWALRGGGGGTWGVVTAVHYKIRPAEPILEFYMNIANIGAPWY
YTGTVDSWLEEWVKLSPNLDNRWGGYWTLNTLILYFVGSEEDAKTTFIND
FNEWKNDLPALEKLAVTTNILTADSYFNIRGGYQMDTDKTGERTINIASR
LIPREFVVNEPEEALKHLKWMVRNGFFTFNYLLGGVVMDPSKDETAVHPA
MRKAVWQIETFQDEMTNYLRENIKNTGAGFNHAWAKEPDWRNSLWGEHLE
KLQELKKKYDSENRFNCWHCIGYQGDEYPRLQPEPSLSPSTSLEISSSSF
MSSESPSSSPLLSTTLISSQVVSLYIQSSSLSFSSSFSETQSFSQSQTPT
TSMPESFAPSHTTFISSTPSFPSMAASSSSMSPTNSPISPTPPSSSQAIT
STASVTSPSSSAVHLQVNSLLAFLFSLLSFSFLLI Run BLAST on NCBI transcript from alignment at scaffold_412:83259..85979 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064388 ID=TCONS_00064388|Name=TCONS_00064388|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at scaffold_412:83259..85979 (Clytia hemisphaerica)
GTCAAGGATAAAATAAAGCTGGAATGTAATGAATGTGAATGAGAAAGTTC
TTATCTCTATTATGGAAAAAACCCTGCAGATCTCATCTTTTCTGTTGTAC
TTAAAAAAGTATTAAAGTATACTGCTAAGCTATTTATATTTTGGGTATAT
TGCTGAGTTAATCGTATTTAGACTTGCTGAAGCAATCATATTTTTTCCAT
TAATATTCGGTGTGCTTGACCTGCAGTCATCATTTTGTGAACTAAGATTT
CATCAATACCTTTATGAGAAAAAAGATGTTTGTCATAAAACTGCTTCTGC
TCTATGCTCTCCTGAATGTTTCCTTCTGTTCCAAGAAGAAATATTGTGAG
CCTGATTCGCTTTGCTGGCCCAGTCAGAGTGAATGGAACGATTTTGATGA
ATCTTTGAACGGGACACTTCATCAACTTTCACCAGATGATTACGAACAAT
GTGAAAAACAAGGTGACAACGCGTTCAACATCTCATCCACTGGAAATGGT
ATTTGCATGCAGTATCATGATTGCTCACGTCAATTCTGTCAAACCAACTC
TTCCTGGAACATCCCGGCTTACAGTGTGGAGGTCAAATCTGTGAGTGATG
TACAACTGGCCATTGCGTTTGCCAATAAATACAACATTGCTGTTTCAATC
AAAACATCTGGTCATTCATATGCTGGCTCCAGTATGGGGAAATCTACTTT
GTTGATTTGGACACGCAATCTACCCGAACACTTGAAGACTGTAGATGATG
TCAAACAAAACTTCACTGATTCTTGCGGAACCGTTTTCACTCATGCAGTC
AAAGTTGGTGGTGGGCAAAGATGGAATAGTGTATACAAAGCCTTGAATTC
AAAATACCATATTGTTGGAGGTGGTGGATTGACAGTATCTGCAGCAGGTG
GCTGGCTTCAAGGATGTGGCTTGTCTTCCATGTCTCGCAAATATGGGATA
GGAATTGATAATGTTATTGACTTTGACGTTGTCCTTGCAAATGGAAGTTG
TGTTACCGTAGATAAGTGTACTAATCCAGACTTGTTTTGGGCGCTACGAG
GCGGAGGTGGTGGTACTTGGGGTGTTGTCACAGCAGTTCACTACAAGATT
CGACCAGCTGAACCCATTCTTGAGTTTTACATGAACATTGCGAACATTGG
AGCCCCTTGGTATTACACAGGGACTGTAGATTCTTGGTTGGAAGAGTGGG
TGAAACTCTCACCAAATCTGGACAATCGTTGGGGAGGTTATTGGACATTG
AACACacttattttgtattttgtcgGTTCTGAAGAAGATGCTAAAACTAC
TTTCatcaatgatttcaatgaatggaAAAATGACTTGCCTGCGCTAGAGA
AACTAGCTGTCACAACAAACATTTTGACAGCTGACAGTTATTTCAATATT
CGTGGAGGTTATCAAATGGATACTGATAAAACTGGAGAACGTACGATCAA
TATCGCAAGTCGGTTAATCCCGCGTGAATTTGTGGTGAACGAACCTGAGG
AAGCTTTGAAACATTTGAAATGGATGGTGAGAAACGGGTTTTTCACTTTC
AATTATCTCTTAGGAGGTGTAGTGATGGATCCTAGCAAAGACGAAACGGC
TGTCCATCCCGCAATGAGAAAAGCTGTTTGGCAAATCGAAACCTTCCAGG
ATGAAATGACGAATTATTTGCGAGAGAATATCAAAAATACAGGAGCTGGA
TTCAACCATGCTTGGGCGAAAGAACCTGATTGGCGAAACTCTTTATGGGG
AGAACACCTGGAGAAATTGCAAgagttgaaaaagaaatatgattctGAAA
ATCGTTTCAACTGTTGGCATTGTATCGGTTACCAAGGAGATGAATATCCA
CGCTTGCAACCTGAACCATCTCTCTCACCTTCCACTTCACTCGAAATTTC
ATCCTCTTCGTTCATGTCATCTGAATCACCATCATCTTCTCCCCTTCTTT
CTACCACTCTCATATCGTCACAAGTAGTTTCATTGTATATCCAATCATCC
TCGCTCTCTTTCTCAAGCTCTTTCTCTGAAACTCAATCTTTCTCGCAATC
CCAAACCCCAACAACTTCCATGCCTGAATCATTCGCACCTTCTCACACAA
CGTTCATCTCTTCCACGCCATCTTTTCCATCTATGGCCGCATCCTCTTCA
TCCATGTCACCCACCAACTCACCTATTTCACCTACACCACCATCCTCATC
ACAAGCCATCACTTCAACAGCATCTGTTACCTCACCCTCATCATCAGCAG
TTCACCTTCAAGTCAATTCACTTCTCGCATTTCTCttttctcttctctct
tttAGTTTTCTACTCATTTAAAGCAGGTCACCATTATTTTTCATACTCGT
AAATCGTCATGATGGTCATCAACACAACAAGTtttgtattcaaacaattt
ttgtatctttttatattttaattttactgACATACAACCCCTTTTATTAC
CCAATCAATATGCAGTGAGCAGCAAACGAGCTCTAAAATCGAATTGTTCT
CGTCGTCACACTATTATTGAACTTTTTCATTACAGTAGACTATTTGCGAT
CTCTAGTGAGGAAAATGGTTTTGAACAAAGGATGTTATTGAATTGGGTTA
AAAAAGGGTTAAAcattattttgtatcattgtaaTTAGTTGTCATATAAC
TCTTTCCTTCTTGTGAATAATTTCCGTCAATATAATTTATACGTCTATTC
AGCACTTTGTGTTGTAAGCAC Coding sequence (CDS) from alignment at scaffold_412:83259..85979 >TCONS_00064388 ID=TCONS_00064388|Name=TCONS_00064388|organism=Clytia hemisphaerica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_412:83259..85979 (Clytia hemisphaerica)
ATGAGAAAAAAGATGTTTGTCATAAAACTGCTTCTGCTCTATGCTCTCCT
GAATGTTTCCTTCTGTTCCAAGAAGAAATATTGTGAGCCTGATTCGCTTT
GCTGGCCCAGTCAGAGTGAATGGAACGATTTTGATGAATCTTTGAACGGG
ACACTTCATCAACTTTCACCAGATGATTACGAACAATGTGAAAAACAAGG
TGACAACGCGTTCAACATCTCATCCACTGGAAATGGTATTTGCATGCAGT
ATCATGATTGCTCACGTCAATTCTGTCAAACCAACTCTTCCTGGAACATC
CCGGCTTACAGTGTGGAGGTCAAATCTGTGAGTGATGTACAACTGGCCAT
TGCGTTTGCCAATAAATACAACATTGCTGTTTCAATCAAAACATCTGGTC
ATTCATATGCTGGCTCCAGTATGGGGAAATCTACTTTGTTGATTTGGACA
CGCAATCTACCCGAACACTTGAAGACTGTAGATGATGTCAAACAAAACTT
CACTGATTCTTGCGGAACCGTTTTCACTCATGCAGTCAAAGTTGGTGGTG
GGCAAAGATGGAATAGTGTATACAAAGCCTTGAATTCAAAATACCATATT
GTTGGAGGTGGTGGATTGACAGTATCTGCAGCAGGTGGCTGGCTTCAAGG
ATGTGGCTTGTCTTCCATGTCTCGCAAATATGGGATAGGAATTGATAATG
TTATTGACTTTGACGTTGTCCTTGCAAATGGAAGTTGTGTTACCGTAGAT
AAGTGTACTAATCCAGACTTGTTTTGGGCGCTACGAGGCGGAGGTGGTGG
TACTTGGGGTGTTGTCACAGCAGTTCACTACAAGATTCGACCAGCTGAAC
CCATTCTTGAGTTTTACATGAACATTGCGAACATTGGAGCCCCTTGGTAT
TACACAGGGACTGTAGATTCTTGGTTGGAAGAGTGGGTGAAACTCTCACC
AAATCTGGACAATCGTTGGGGAGGTTATTGGACATTGAACACacttattt
tgtattttgtcgGTTCTGAAGAAGATGCTAAAACTACTTTCatcaatgat
ttcaatgaatggaAAAATGACTTGCCTGCGCTAGAGAAACTAGCTGTCAC
AACAAACATTTTGACAGCTGACAGTTATTTCAATATTCGTGGAGGTTATC
AAATGGATACTGATAAAACTGGAGAACGTACGATCAATATCGCAAGTCGG
TTAATCCCGCGTGAATTTGTGGTGAACGAACCTGAGGAAGCTTTGAAACA
TTTGAAATGGATGGTGAGAAACGGGTTTTTCACTTTCAATTATCTCTTAG
GAGGTGTAGTGATGGATCCTAGCAAAGACGAAACGGCTGTCCATCCCGCA
ATGAGAAAAGCTGTTTGGCAAATCGAAACCTTCCAGGATGAAATGACGAA
TTATTTGCGAGAGAATATCAAAAATACAGGAGCTGGATTCAACCATGCTT
GGGCGAAAGAACCTGATTGGCGAAACTCTTTATGGGGAGAACACCTGGAG
AAATTGCAAgagttgaaaaagaaatatgattctGAAAATCGTTTCAACTG
TTGGCATTGTATCGGTTACCAAGGAGATGAATATCCACGCTTGCAACCTG
AACCATCTCTCTCACCTTCCACTTCACTCGAAATTTCATCCTCTTCGTTC
ATGTCATCTGAATCACCATCATCTTCTCCCCTTCTTTCTACCACTCTCAT
ATCGTCACAAGTAGTTTCATTGTATATCCAATCATCCTCGCTCTCTTTCT
CAAGCTCTTTCTCTGAAACTCAATCTTTCTCGCAATCCCAAACCCCAACA
ACTTCCATGCCTGAATCATTCGCACCTTCTCACACAACGTTCATCTCTTC
CACGCCATCTTTTCCATCTATGGCCGCATCCTCTTCATCCATGTCACCCA
CCAACTCACCTATTTCACCTACACCACCATCCTCATCACAAGCCATCACT
TCAACAGCATCTGTTACCTCACCCTCATCATCAGCAGTTCACCTTCAAGT
CAATTCACTTCTCGCATTTCTCttttctcttctctcttttAGTTTTCTAC
TCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064388-exon-scaffold_412-1491911889:83259..85979 | TCONS_00064388-exon-scaffold_412-1491911889:83259..85979 | Clytia hemisphaerica | exon |
| TCONS_00064388-exon-scaffold_412-1510915933:83259..85979 | TCONS_00064388-exon-scaffold_412-1510915933:83259..85979 | Clytia hemisphaerica | exon |
| TCONS_00064388-exon-scaffold_412-1575043694:83259..85979 | TCONS_00064388-exon-scaffold_412-1575043694:83259..85979 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:83259..85979 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0003824 | catalytic activity |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0050660 |
flavin adenine dinucleotide binding |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
| molecular_function |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
Blast
The following BLAST results are available for this feature:
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