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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064385 ID=TCONS_00064385|Name=TCONS_00064385|organism=Clytia hemisphaerica|type=transcript|length=1665bp
TCTTATGGTATCAAAGTATGGTGATGGCACGAGAAAGTCCTGACTTGATT
CGCTCTGCGACTGCACCCATCTCAGCAAGCTCGCACGAATCTCGTAAAGA
AAACAAGAAAGCCAAATCACTGACTGAGAGATTCCGCTCGAAGTTCAGTC
GGTCAAAAGGCTCATCACACACAGCCATCAAAGAAATCGACACCAATGAG
GAGATCACTTACGGGAAAATCGTTGTTTTAGGACAAGCCGGAGTTGGTAA
AACGTCCTTCATTCATCGGTTGGTAAACAACTACTTCACAGATCAATACA
CACCCACCACCACAAGTTCCAGTTTCGAAGTCACCGCTATCGTCGAATGT
GAAGACCTTTTCAAAAGCAAGAAAGAAAGATTCATTGATTACGCAAAATC
TGTTCGAAAAGTTAAGAGTTTCTCACGTACGACCATCAGTCAACAGTTAG
CAAAACAACAATGTAAAACAAAGACCTTCAAATTTCAACTGGTGGATACA
ACAGAAGACATCAATGAATCATCACCCATGGAATATCGATCGACAGTCGC
CAATGCTCATGGATTCTTACTGGTCTGTTCGTCAGACAAAGCAGACAGCA
TCCAATACATCCGTGATATTTACCAAGACATCGCCAAGATGAGAATCAAC
ACTACAGTCCCTGTTCTCATCATCCAAAATAAGGATGATCTACACGCAGG
TAGCGAAGAAGATGAGACTTTCGATGCCGAGTTAGAGCAACTGGCAGTAG
AGTTGGACGTTGAAACGTGTCTCCTATCTACCGCTAACTCCAGTGGCTTC
GAAAATTTAACAGAACTTTTATTGAATGAAATGAACGTGTACAATGATGA
TTGTCGGGTTGAAATGGCTTTACCTGATGAAGTCGCTTACTGTGACCAAT
CAGATGATGAATTAGAAACAGGGCCGAAAGTGATCACTAACAGAAACGCA
GCAGGAAAAATGAGACGGATGCGATCAAGCGTTAATTGAGAGAAATTGAT
GGTTTGAACCAAACGGTGTGGTTTCACAAGAAGAAGGGAAAGTTGGCAAC
GAAAGCACTTTTCCTTCAAATACACACATCCCCAAAACAATTTCTGTTTA
CGGATAAGATAGAAAGTTAATCGACTTTTGGTAATTAAGATAATGACAGT
CATTTACGCAGATTGGTCACCATGGTGACTTGTGGCATGACATTGCATCT
TTTCAGGAAGTTAGATGGATATGATGATCTAGTGAAATTCATTAACAGAC
GACCGACAAATCCTCCTCTTTGTgcgaaagaagaagaagaaagatctCTT
CTCCGTGGAAGAAGGCCGACTCACTGGACAACTATCAAACATTCAAGAGT
TACGTTACACCTTCTGCAAAACAAAGATACAAcctctttttaaactttaa
aaccaaAAAACAATAATGGCCTGATGAAAGGCAAAGTACAGGAAGGAATT
TCTTCAGAGTGGAATTATCATTTTATTGTCTCGTTTCGACCACGCAGGTG
TTTCCTGTCGTTTTTATCGATTCCTCATTTGATCGCAATATTGGAGTCGT
TTTCTCATGTTTTATAATGTAATATAAAttgtaaatataaaaacaattgT
TTTCTGTCTGAAATTTAAGTAAcaaatgaaatattgaaatgaattttaca
atACAATTAAAAAAC Run BLAST on NCBI protein sequence of TCONS_00064385-protein >TCONS_00064385-protein ID=TCONS_00064385-protein|Name=TCONS_00064385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
LWYQSMVMARESPDLIRSATAPISASSHESRKENKKAKSLTERFRSKFSR
SKGSSHTAIKEIDTNEEITYGKIVVLGQAGVGKTSFIHRLVNNYFTDQYT
PTTTSSSFEVTAIVECEDLFKSKKERFIDYAKSVRKVKSFSRTTISQQLA
KQQCKTKTFKFQLVDTTEDINESSPMEYRSTVANAHGFLLVCSSDKADSI
QYIRDIYQDIAKMRINTTVPVLIIQNKDDLHAGSEEDETFDAELEQLAVE
LDVETCLLSTANSSGFENLTELLLNEMNVYNDDCRVEMALPDEVAYCDQS
DDELETGPKVITNRNAAGKMRRMRSSVN Run BLAST on NCBI transcript from alignment at scaffold_412:130140..132716- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064385 ID=TCONS_00064385|Name=TCONS_00064385|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at scaffold_412:130140..132716- (Clytia hemisphaerica)
TCTTATGGTATCAAAGGTTTGTTTGTCTGTTTTTTTATGCATTAAGTTTG
TAAGCCACGTTAATCGAATAAGGAGTAAGATAATAAGACCTCGCTTCTTT
ATCTTTGAATCAAACAGCCGTCTATCTAATCTTTATAACCGTCATATTTT
TTCATAATACACATTTTTTTATAGCTTTCATATCAAAAGTTTGTTGATGA
GGATTTTTGATTCGCAGAAAAGTTTTTCGAACTCAAAGATTATTCATATT
ACTCAGACCTTTAGATCAGCAGTTTTGTTTGACATTGACGTGTCCATAAA
TCATCTGGGTTTAATTGGTAAGATTGTAAAAGTGAAGAAGTGAAAAAAGG
TTGGTATGTTTCTTTTAAAGAAATTATATTTGAGAGTTTTATTAAAGTTC
CTTGTTGAGAGGTAGCTTTTCATATCATTTCAGTTTATTTTAATTATAGA
AAGCCGATTTGAATTTGAATAAAAGTAAAAGGAATCAATATAGAAAACTC
CGTGGACGATAATATTTGGCATCAAATTACTACAACTCTAACAACAATTT
CAAAGGATGTGACATTTAGTTTGAATAATATAATTAAATGAGTAGTCTTT
TGTTTGACGGAACAATGAAAAAGAACGCAGCAAGCATTGTTCTCAAATAA
GGAGCTCATTAAAACATTGAGAAATTTCATAAACAACCACATCAACAACA
AAATTGATTTAATCTCAAACCTTTCTCTTGAACACACACGACACAGCGTT
TTTTTATAACTGTTATTTTTTCAGTATGGTGATGGCACGAGAAAGTCCTG
ACTTGATTCGCTCTGCGACTGCACCCATCTCAGCAAGCTCGCACGAATCT
CGTAAAGAAAACAAGAAAGCCAAATCACTGACTGAGAGATTCCGCTCGAA
GTTCAGTCGGTCAAAAGGCTCATCACACACAGCCATCAAAGAAATCGACA
CCAATGAGGAGATCACTTACGGGAAAATCGTTGTTTTAGGACAAGCCGGA
GTTGGTAAAACGTCCTTCATTCATCGGTTGGTAAACAACTACTTCACAGA
TCAATACACACCCACCACCACAAGTTCCAGTTTCGAAGTCACCGCTATCG
TCGAATGTGAAGACCTTTTCAAAAGCAAGAAAGAAAGATTCATTGATTAC
GCAAAATCTGTTCGAAAAGTTAAGAGTTTCTCACGTACGACCATCAGTCA
ACAGTTAGCAAAACAACAATGTAAAACAAAGACCTTCAAATTTCAACTGG
TGGATACAACAGAAGACATCAATGAATCATCACCCATGGAATATCGATCG
ACAGTCGCCAATGCTCATGGATTCTTACTGGTCTGTTCGTCAGACAAAGC
AGACAGCATCCAATACATCCGTGATATTTACCAAGACATCGCCAAGATGA
GAATCAACACTACAGTCCCTGTTCTCATCATCCAAAATAAGGATGATCTA
CACGCAGGTAGCGAAGAAGATGAGACTTTCGATGCCGAGTTAGAGCAACT
GGCAGTAGAGTTGGACGTTGAAACGTGTCTCCTATCTACCGCTAACTCCA
GTGGCTTCGAAAATTTAACAGAACTTTTATTGAATGAAATGAACGTGTAC
AATGATGATTGTCGGGTTGAAATGGCTTTACCTGATGAAGTCGCTTACTG
TGACCAATCAGATGATGAATTAGAAACAGGTAAGCATCATTGAAATCTTT
TCTGTTTCACTGAGTTTTAGTATTAAGCAATGTAAAAAGACGTGAATGGA
AGAAGTGAAATACCTCCCTACTTTCTTTCCATATCTCTTATATTGCATCA
CTTATAAAATATTTCTCTTTTTCTCATCATCAGGGCCGAAAGTGATCACT
AACAGAAACGCAGCAGGAAAAATGAGACGGATGCGATCAAGCGTTAATTG
AGAGAAATTGATGGTTTGAACCAAACGGTGTGGTTTCACAAGAAGAAGGG
AAAGTTGGCAACGAAAGCACTTTTCCTTCAAATACACACATCCCCAAAAC
AATTTCTGTTTACGGATAAGATAGAAAGTTAATCGACTTTTGGTAATTAA
GATAATGACAGTCATTTACGCAGATTGGTCACCATGGTGACTTGTGGCAT
GACATTGCATCTTTTCAGGAAGTTAGATGGATATGATGATCTAGTGAAAT
TCATTAACAGACGACCGACAAATCCTCCTCTTTGTGCGAAAGAAGAAGAA
GAAAGATCTCTTCTCCGTGGAAGAAGGCCGACTCACTGGACAACTATCAA
ACATTCAAGAGTTACGTTACACCTTCTGCAAAACAAAGATACAACCTCTT
TTTAAACTTTAAAACCAAAAAACAATAATGGCCTGATGAAAGGCAAAGTA
CAGGAAGGAATTTCTTCAGAGTGGAATTATCATTTTATTGTCTCGTTTCG
ACCACGCAGGTGTTTCCTGTCGTTTTTATCGATTCCTCATTTGATCGCAA
TATTGGAGTCGTTTTCTCATGTTTTATAATGTAATATAAATTGTAAATAT
AAAAACAATTGTTTTCTGTCTGAAATTTAAGTAACAAATGAAATATTGAA
ATGAATTTTACAATACAATTAAAAAAC Coding sequence (CDS) from alignment at scaffold_412:130140..132716- >TCONS_00064385 ID=TCONS_00064385|Name=TCONS_00064385|organism=Clytia hemisphaerica|type=CDS|length=2961bp|location=Sequence derived from alignment at scaffold_412:130140..132716- (Clytia hemisphaerica)
GGCCGAAAGTGATCACTAACAGAAACGCAGCAGGAAAAATGAGACGGATG
CGATCAAGCGTTAATTGATATGGTGATGGCACGAGAAAGTCCTGACTTGA
TTCGCTCTGCGACTGCACCCATCTCAGCAAGCTCGCACGAATCTCGTAAA
GAAAACAAGAAAGCCAAATCACTGACTGAGAGATTCCGCTCGAAGTTCAG
TCGGTCAAAAGGCTCATCACACACAGCCATCAAAGAAATCGACACCAATG
AGGAGATCACTTACGGGAAAATCGTTGTTTTAGGACAAGCCGGAGTTGGT
AAAACGTCCTTCATTCATCGGTTGGTAAACAACTACTTCACAGATCAATA
CACACCCACCACCACAAGTTCCAGTTTCGAAGTCACCGCTATCGTCGAAT
GTGAAGACCTTTTCAAAAGCAAGAAAGAAAGATTCATTGATTACGCAAAA
TCTGTTCGAAAAGTTAAGAGTTTCTCACGTACGACCATCAGTCAACAGTT
AGCAAAACAACAATGTAAAACAAAGACCTTCAAATTTCAACTGGTGGATA
CAACAGAAGACATCAATGAATCATCACCCATGGAATATCGATCGACAGTC
GCCAATGCTCATGGATTCTTACTGGTCTGTTCGTCAGACAAAGCAGACAG
CATCCAATACATCCGTGATATTTACCAAGACATCGCCAAGATGAGAATCA
ACACTACAGTCCCTGTTCTCATCATCCAAAATAAGGATGATCTACACGCA
GGTAGCGAAGAAGATGAGACTTTCGATGCCGAGTTAGAGCAACTGGCAGT
AGAGTTGGACGTTGAAACGTGTCTCCTATCTACCGCTAACTCCAGTGGCT
TCGAAAATTTAACAGAACTTTTATTGAATGAAATGAACGTGTACAATGAT
GATTGTCGGGTTGAAATGGCTTTACCTGATGAAGTCGCTTACTGTGACCA
ATCAGATGATGAATTAGAAACAGTTATGGTATCAAAGGGCCGAAAGTGAT
CACTAACAGAAACGCAGCAGGAAAAATGAGACGGATGCGATCAAGCGTTA
ATTGATATGGTGATGGCACGAGAAAGTCCTGACTTGATTCGCTCTGCGAC
TGCACCCATCTCAGCAAGCTCGCACGAATCTCGTAAAGAAAACAAGAAAG
CCAAATCACTGACTGAGAGATTCCGCTCGAAGTTCAGTCGGTCAAAAGGC
TCATCACACACAGCCATCAAAGAAATCGACACCAATGAGGAGATCACTTA
CGGGAAAATCGTTGTTTTAGGACAAGCCGGAGTTGGTAAAACGTCCTTCA
TTCATCGGTTGGTAAACAACTACTTCACAGATCAATACACACCCACCACC
ACAAGTTCCAGTTTCGAAGTCACCGCTATCGTCGAATGTGAAGACCTTTT
CAAAAGCAAGAAAGAAAGATTCATTGATTACGCAAAATCTGTTCGAAAAG
TTAAGAGTTTCTCACGTACGACCATCAGTCAACAGTTAGCAAAACAACAA
TGTAAAACAAAGACCTTCAAATTTCAACTGGTGGATACAACAGAAGACAT
CAATGAATCATCACCCATGGAATATCGATCGACAGTCGCCAATGCTCATG
GATTCTTACTGGTCTGTTCGTCAGACAAAGCAGACAGCATCCAATACATC
CGTGATATTTACCAAGACATCGCCAAGATGAGAATCAACACTACAGTCCC
TGTTCTCATCATCCAAAATAAGGATGATCTACACGCAGGTAGCGAAGAAG
ATGAGACTTTCGATGCCGAGTTAGAGCAACTGGCAGTAGAGTTGGACGTT
GAAACGTGTCTCCTATCTACCGCTAACTCCAGTGGCTTCGAAAATTTAAC
AGAACTTTTATTGAATGAAATGAACGTGTACAATGATGATTGTCGGGTTG
AAATGGCTTTACCTGATGAAGTCGCTTACTGTGACCAATCAGATGATGAA
TTAGAAACAGTTATGGTATCAAAGGGCCGAAAGTGATCACTAACAGAAAC
GCAGCAGGAAAAATGAGACGGATGCGATCAAGCGTTAATTGATATGGTGA
TGGCACGAGAAAGTCCTGACTTGATTCGCTCTGCGACTGCACCCATCTCA
GCAAGCTCGCACGAATCTCGTAAAGAAAACAAGAAAGCCAAATCACTGAC
TGAGAGATTCCGCTCGAAGTTCAGTCGGTCAAAAGGCTCATCACACACAG
CCATCAAAGAAATCGACACCAATGAGGAGATCACTTACGGGAAAATCGTT
GTTTTAGGACAAGCCGGAGTTGGTAAAACGTCCTTCATTCATCGGTTGGT
AAACAACTACTTCACAGATCAATACACACCCACCACCACAAGTTCCAGTT
TCGAAGTCACCGCTATCGTCGAATGTGAAGACCTTTTCAAAAGCAAGAAA
GAAAGATTCATTGATTACGCAAAATCTGTTCGAAAAGTTAAGAGTTTCTC
ACGTACGACCATCAGTCAACAGTTAGCAAAACAACAATGTAAAACAAAGA
CCTTCAAATTTCAACTGGTGGATACAACAGAAGACATCAATGAATCATCA
CCCATGGAATATCGATCGACAGTCGCCAATGCTCATGGATTCTTACTGGT
CTGTTCGTCAGACAAAGCAGACAGCATCCAATACATCCGTGATATTTACC
AAGACATCGCCAAGATGAGAATCAACACTACAGTCCCTGTTCTCATCATC
CAAAATAAGGATGATCTACACGCAGGTAGCGAAGAAGATGAGACTTTCGA
TGCCGAGTTAGAGCAACTGGCAGTAGAGTTGGACGTTGAAACGTGTCTCC
TATCTACCGCTAACTCCAGTGGCTTCGAAAATTTAACAGAACTTTTATTG
AATGAAATGAACGTGTACAATGATGATTGTCGGGTTGAAATGGCTTTACC
TGATGAAGTCGCTTACTGTGACCAATCAGATGATGAATTAGAAACAGTTA
TGGTATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064385-exon-scaffold_412-1575043694:132701..132716 | TCONS_00064385-exon-scaffold_412-1575043694:132701..132716 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1575043694:131038..131942 | TCONS_00064385-exon-scaffold_412-1575043694:131038..131942 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1575043694:130140..130883 | TCONS_00064385-exon-scaffold_412-1575043694:130140..130883 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1510915933:132701..132716 | TCONS_00064385-exon-scaffold_412-1510915933:132701..132716 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1510915933:131038..131942 | TCONS_00064385-exon-scaffold_412-1510915933:131038..131942 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1510915933:130140..130883 | TCONS_00064385-exon-scaffold_412-1510915933:130140..130883 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1491911889:132701..132716 | TCONS_00064385-exon-scaffold_412-1491911889:132701..132716 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1491911889:131038..131942 | TCONS_00064385-exon-scaffold_412-1491911889:131038..131942 | Clytia hemisphaerica | exon |
| TCONS_00064385-exon-scaffold_412-1491911889:130140..130883 | TCONS_00064385-exon-scaffold_412-1491911889:130140..130883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:130140..132716 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007264 | small GTPase mediated signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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