TCONS_00064380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064380
Unique NameTCONS_00064380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064380 ID=TCONS_00064380|Name=TCONS_00064380|organism=Clytia hemisphaerica|type=transcript|length=2935bp
aacaaaatcaaatcaccAGTTTTGTTTGtatcttcttcattcttctgtta
ttttctgaagttttggaaattatgattctaaaaatttcattggctgagcc
tcaaggtatgtttagcatatgcttaatttttctggaaatttgagcttcat
tatgcttataaaaaaaataagtgTAATGCGTTCTTTGAAAAcacttgaaa
ttcaatgtttctaaagaacgtGAAATACTGCACATACAAAGAGATAATTT
TCAGCCCAGTGTATACCAGTATCAAATATTTCCAACGTTTACTATTATGA
TGTAGAGTTAAGATGCTTGATCGAGAAACGCTTGAAATAAGAATTTTCTT
AAATCTTTCTCTTTCTGAATGAATCCCTTATGGGACTCAAGTAAAATAAA
GCCCAGCTCGTCTTTCAGTGTTAAAGATAAAACTGAAATAAAACATAAAC
ACAATCTTGTTTACAAAGTCACGTGTCCTGATTGTCCGGCAAACTACATT
GGTGAGGCTGGAAGAAGGTTACAGGAACGGGTCAACGATCACGGAGGAGG
AGACAAAAACAGCCACGTTTTGAGACATTCCTTAGAGCGTGGTCACAGTA
AAGTTAAGTTATTAAGAATTTCAATACATTGGGAAATAAATTTTACACAG
AGATACAAAGAAAAGTCAGTGAGGCATtctttattaaaagtcaaatgCCC
GTACGATAAACATTCAAATACTATCTAGGCctattttttattgtatatat
gATTAAAAGAATCCCTTGAGAATTAGCAATATAATATACTGGTATAGTTT
TATTGTCCTTTGATTTAGGTTTTATGATAGGTAATTAGCctcttttattt
caaatttcttttaaacttTTTAAACATTTTACAGATAGCTAATTTTCATT
ACAACAAAAATTTTTACTGATGATGGTACTCTGTTAGAGGCCAAAACGTT
TAGAAAAATAAATTTCAAAAATGAACTGAAAGCAGCTTGCACGGCATTTC
GGACTTTAGGTGTCGAATCGGGTTCTGGGCCTACTTTTTGAAAATTTGTG
TTTTTTGATACTCGTCTTTTGTCGTGTGTCTTGTTCTTGTCTCTTTGAAC
TTGTTTGTTTTGTCTGTTGTTTATCCCCTTTTTTGTTTCTTTGTTTTTGT
TTATTTTTCTATGTTTGTTATCGTCAACTGCTCTAACTTGGGACTATCTG
ACAAAACATGGGACGGCAAATTTGTTTTCTCCTTGAATCTTGAATTCTGT
TTCCTgagtatactgcaattgcggtacatgaaaaatttaaaagtgacgtt
tatactgcaattgcagtaagaaattactaccgcaattgagggatttccct
gactgagtGTTTGACGTCatccttaaaacatgtttaaagccgcaGCGCCT
GTCGCAAGTTggggactccagattgcatttgttaggtttttgagtggttt
ttggtgtttgtgtttatgtgattgctgttttgtttttctgcttggctttt
taaactttatgtctagACATTTCTCttttggtttgttggttctttttcgc
ataaaattctcatttcttgacagaatgtttgattggtttgatttatatat
ttagaaaaattcaaaaaaatggaaaaaaaacatataattataaaaatatt
agtccctttttatgtttcatctttatttcatttagtattttcaacacttt
ctctccttgaggtcagatctctgatcttcaccatatatatataTCAACAG
AACAGTTAgagcatagaggtataaagcaCGGCTATTCACACATGAAGCTT
AGAGAATCGTGCAATGTAGATGGGGCCTTAAATCGCGTGTTTTTGTTTGG
GCGGCTGGCGGCctcaaaatttatcttttttgctCATTCTTGTTCCTCGA
ATtacgaaaaattttgaaaatcggaGAAATTTGGAGAAGAATCCTCTGGA
AACCAAATTCTTTGGAGGTTAAAAACCAAAAATCAGAAGTCAGAAAAGTG
CATCCTACTTCGAGCAATGTGGAATTTTTTAGACTATAGTTTGAGGACAC
CTTCAAAGTATGCTTCAGGAATAAGCTGATGGAAATTTAATGCCCAAGCT
TTAGAGAATGGATTTGGATGTTCTGGAAAGGAGAAAGACCATGCTACCAG
CAGGGAATTGACTGGCATGGTTTGTCAAGATTGCTCGTACGAAATCGCGC
TGTGCGTTGAAATCCATTTTCTTGATAATGCATATTGTTCATCTTGACTT
ATGGTCAGTACAAATAATTGTTGAATGTTCGTGCAATGGCTTAGATCtag
tacaATTTATCGCTTGCAAACCGAATACTGATTTTCGAAGCAGACGTTAT
GATTACGGGTTGGGAAATGACATACACAGCAGAATAGAATTCCTGTTGTT
GACTTTATGACGTGGTAGATGACTTTCATGAATAGATTTCTTGGTATTTT
AGAACATTAACTTATACACCTAACCTTTGTTATTTACATATGTTGATCAT
GGATGAGAAATGTATTCAATATTTACCTTTTCTCACAATTATAATCTGAT
AATATAATGAATAATTgtatttcataattatattaaAACCTGTACTTTTT
AGTCAGTCCATCATTCAATATAGCTAGACAAAGTCTATACTTTATTTAAT
TTACATTTAATGAAGAGTCCCCCAGGGTGCGAATGTTGTATGTAGCTTGT
GTGAAAGATGACTGGACTGACAGTATTTGATCGATGACTTTTAATTTACA
TTCTACTTAGCATCAGCTGGATTAGTCCCCCATTTTCTTATTAATTGTAG
CTTGAAACTCTTTTCTTAATATTGGTAAaccaaaactttttcaaacattt
tttataatgaaGCTTTTTACTTCTACAAAGGAATAGAACCTGAAGTAGAG
AATTCTACAGCTAACAGGCAGGTTTCTTTGATTAA
Run BLAST on NCBI

protein sequence of TCONS_00064380-protein

>TCONS_00064380-protein ID=TCONS_00064380-protein|Name=TCONS_00064380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MNPLWDSSKIKPSSSFSVKDKTEIKHKHNLVYKVTCPDCPANYIGEAGRR
LQERVNDHGGGDKNSHVLRHSLERGHSKVKLLRISIHWEINFTQRYKEKS
VRHSLLKVKCPYDKHSNTI
Run BLAST on NCBI

transcript from alignment at scaffold_412:15997..19666-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064380 ID=TCONS_00064380|Name=TCONS_00064380|organism=Clytia hemisphaerica|type=transcript|length=3670bp|location=Sequence derived from alignment at scaffold_412:15997..19666- (Clytia hemisphaerica)
AACAAAATCAAATCACCAGTTTTGTTTGTATCTTCTTCATTCTTCTGTTA
TTTTCTGAAGTTTTGGAAATTATGATTCTAAAAATTTCATTGGCTGAGCC
TCAAGGTATGTTTAGCATATGCTTAATTTTTCTGGAAATTTGAGCTTCAT
TATGCTTATAAAAAAAATAAGTGTAATGCGTTCTTTGAAAACACTTGAAA
TTCAATGTTTCTAAAGAACGTGAAATACTGCACATACAAAGAGATAATTT
TCAGCCCAGTGTATACCAGTATCAAATATTTCCAACGTTTACTATTATGA
TGTAGAGTTAAGATGCTTGATCGAGAAACGCTTGAAATAAGAATTTTCTT
AAATCTTTCTCTTTCTGAATGAATCCCTTATGGGACTCAAGTAAAATAAA
GCCCAGCTCGTCTTTCAGTGTTAAAGATAAAACTGAAATAAAACATAAAC
ACAATCTTGTTTACAAAGTCACGTGTCCTGATTGTCCGGCAAACTACATT
GGTGAGGCTGGAAGAAGGTTACAGGAACGGGTCAACGATCACGGAGGAGG
AGACAAAAACAGCCACGTTTTGAGACATTCCTTAGAGCGTGGTCACAGTA
AAGTTAAGTTATTAAGAATTTCAATACATTGGGAAATAAATTTTACACAG
AGATACAAAGAAAAGTCAGTGAGGCATTCTTTATTAAAAGTCAAATGCCC
GTACGATAAACATTCAAATACTATCTAGGCCTATTTTTTATTGTATATAT
GATTAAAAGAATCCCTTGAGAATTAGCAATATAATATACTGGTATAGTTT
TATTGTCCTTTGATTTAGGTTTTATGATAGGTAATTAGCCTCTTTTATTT
CAAATTTCTTTTAAACTTTTTAAACATTTTACAGATAGCTAATTTTCATT
ACAACAAAAATTTTTACTGATGATGGTACTCTGTTAGAGGCCAAAACGTT
TAGAAAAATAAATTTCAAAAATGAACTGAAAGCAGCTTGCACGGCATTTC
GGACTTTAGGTGTCGAATCGGGTTCTGGGCCTACTTTTTGAAAATTTGTG
TTTTTTGATACTCGTCTTTTGTCGTGTGTCTTGTTCTTGTCTCTTTGAAC
TTGTTTGTTTTGTCTGTTGTTTATCCCCTTTTTTGTTTCTTTGTTTTTGT
TTATTTTTCTATGTTTGTTATCGTCAACTGCTCTAACTTGGGACTATCTG
ACAAAACATGGGACGGCAAATTTGTTTTCTCCTTGAATCTTGAATTCTGT
TTCCTGAGTATACTGCAATTGCGGTACATGAAAAATTTAAAAGTGACGTT
TATACTGCAATTGCAGTAAGAAATTACTACCGCAATTGAGGGATTTCCCT
GACTGAGTGTTTGACGTCATCCTTAAAACATGTTTAAAGCCGCAGCGCCT
GTCGCAAGTTGGGGACTCCAGATTGCATTTGTTAGGTTTTTGAGTGGTTT
TTGGTGTTTGTGTTTATGTGATTGCTGTTTTGTTTTTCTGCTTGGCTTTT
TAAACTTTATGTCTAGACATTTCTCTTTTGGTTTGTTGGTTCTTTTTCGC
ATAAAATTCTCATTTCTTGACAGAATGTTTGATTGGTTTGATTTATATAT
TTAGAAAAATTCAAAAAAATGGAAAAAAAACATATAATTATAAAAATATT
AGTCCCTTTTTATGTTTCATCTTTATTTCATTTAGTATTTTCAACACTTT
CTCTCCTTGAGGTCAGATCTCTGATCTTCACCATATATATATATCAACAG
AACAGTTAGAGCATAGAGGTATAAAGCACGGCTATTCACACATGAAGCTT
AGAGAATCGTGCAATGTAGATGGGGCCTTAAATCGCGTGTTTTTGTTTGG
GCGGCTGGCGGCCTCAAAATTTATCTTTTTTGCTCATTCTTGTTCCTCGA
ATTACGAAAAATTTTGAAAATCGGAGAAATTTGGAGAAGAATCCTCTGGA
AACCAAATTCTTTGGAGGTTAAAAACCAAAAATCAGAAGTCAGAAAAGTG
CATCCTACTTCGAGCAATGTGGAATTTTTTAGACTATAGTTTGAGGACAC
CTTCAAAGTATGCTTCAGGAATAAGCTGATGGAAATTTAATGCCCAAGCT
TTAGAGAATGGATTTGGATGTTCTGGAAAGGAGAAAGACCATGCTACCAG
CAGGTGAAAATTCTACATCATGGTCATTTTTTTCTGTGAAGCTATGTCTA
TTCGAAGATGCACTATATTTTGTGCCAGAATTATGTCACTACTGCTGTTA
GTGAGTGGTTTTCAAAGGTGATTCTTGAAGTTTAAGACCTAGCTACTGCC
TATGAATTACCATTATTGTTGTCAAACCCTATTTAAGAACCAAGCTTCAT
CATAATATAGAATTTAAAGGCTAATTTAAAGCTTCATTACCAACTAATTT
TTGTATCCCGCGATATATAATAGTGTCACAATAAGAAAGTCTTTCCTTAC
ACAATCTGACTATTAGCATTACTACGTAGAGCCAGCCATCCCTATTTCTT
ATAGGCTCTTATAGGTTAAAACAATTCAACCTTCAGCTCTTAGTTGATAT
GTGTAAATTGCAAAAGTGACATTTATATAGCAGGGCGTAACTGTGGGTGA
AAATGACTAGATTAGCTACAGAGTACCACAAGCACTCGGCAATTTTCTTG
TCTGCTTGTCTGATTGATGGATATTTCAATAACAGACTTAACTTAACACA
ATCATTATTGTATTCCAATTTTAGGGAATTGACTGGCATGGTTTGTCAAG
ATTGCTCGTACGAAATCGCGCTGTGCGTTGAAATCCATTTTCTTGATAAT
GCATATTGTTCATCTTGACTTATGGTCAGTACAAATAATTGTTGAATGTT
CGTGCAATGGCTTAGATCTAGTAAGTTTTATTTTTAAAAATGGATGAACA
TTTTGTACCGTAACCTTTTCAACTGACTTTTTCACAAAACCTTTAAATTG
TCAAACAATGTTTTGTCCAATTTCATTTTTAAATTGTCAATTTTTCATAT
GATTATAATAATTTTCAATCCCTTTTTTTTTCAGGTACAATTTATCGCTT
GCAAACCGAATACTGATTTTCGAAGCAGACGTTATGATTACGGGTTGGGA
AATGACATACACAGCAGAATAGAATTCCTGTTGTTGACTTTATGACGTGG
TAGATGACTTTCATGAATAGATTTCTTGGTATTTTAGAACATTAACTTAT
ACACCTAACCTTTGTTATTTACATATGTTGATCATGGATGAGAAATGTAT
TCAATATTTACCTTTTCTCACAATTATAATCTGATAATATAATGAATAAT
TGTATTTCATAATTATATTAAAACCTGTACTTTTTAGTCAGTCCATCATT
CAATATAGCTAGACAAAGTCTATACTTTATTTAATTTACATTTAATGAAG
AGTCCCCCAGGGTGCGAATGTTGTATGTAGCTTGTGTGAAAGATGACTGG
ACTGACAGTATTTGATCGATGACTTTTAATTTACATTCTACTTAGCATCA
GCTGGATTAGTCCCCCATTTTCTTATTAATTGTAGCTTGAAACTCTTTTC
TTAATATTGGTAAACCAAAACTTTTTCAAACATTTTTTATAATGAAGCTT
TTTACTTCTACAAAGGAATAGAACCTGAAGTAGAGAATTCTACAGCTAAC
AGGCAGGTTTCTTTGATTAA

Coding sequence (CDS) from alignment at scaffold_412:15997..19666-

>TCONS_00064380 ID=TCONS_00064380|Name=TCONS_00064380|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at scaffold_412:15997..19666- (Clytia hemisphaerica)
ATGAATCCCTTATGGGACTCAAGTAAAATAAAGCCCAGCTCGTCTTTCAG
TGTTAAAGATAAAACTGAAATAAAACATAAACACAATCTTGTTTACAAAG
TCACGTGTCCTGATTGTCCGGCAAACTACATTGGTGAGGCTGGAAGAAGG
TTACAGGAACGGGTCAACGATCACGGAGGAGGAGACAAAAACAGCCACGT
TTTGAGACATTCCTTAGAGCGTGGTCACAGTAAAGTTAAGTTATTAAGAA
TTTCAATACATTGGGAAATAAATTTTACACAGAGATACAAAGAAAAGTCA
GTGAGGCATTCTTTATTAAAAGTCAAATGCCCGTACGATAAACATTCAAA
TACTATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040365XLOC_040365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064380-exon-scaffold_412-1575043694:17514..19666TCONS_00064380-exon-scaffold_412-1575043694:17514..19666Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1575043694:16797..16942TCONS_00064380-exon-scaffold_412-1575043694:16797..16942Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1575043694:15997..16632TCONS_00064380-exon-scaffold_412-1575043694:15997..16632Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1510915933:17514..19666TCONS_00064380-exon-scaffold_412-1510915933:17514..19666Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1510915933:16797..16942TCONS_00064380-exon-scaffold_412-1510915933:16797..16942Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1510915933:15997..16632TCONS_00064380-exon-scaffold_412-1510915933:15997..16632Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1491911889:17514..19666TCONS_00064380-exon-scaffold_412-1491911889:17514..19666Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1491911889:16797..16942TCONS_00064380-exon-scaffold_412-1491911889:16797..16942Clytia hemisphaericaexon
TCONS_00064380-exon-scaffold_412-1491911889:15997..16632TCONS_00064380-exon-scaffold_412-1491911889:15997..16632Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064380-proteinTCONS_00064380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:15997..19666 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22822	1.50562	1.62105	2.03445	4.33294	2.94662	3.08278	3.15789	2.58568	2.95979	3.66125	5.24901	1.76982	1.64804	1.48467	1.49071	1.05622	1.57856	1.85039	2.44426	1.92713	2.5712	1.35913	1.30299	1.3181	1.85168	3.16505	3.83399	2.20595	2.2027
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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