TCONS_00064379 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064379
Unique NameTCONS_00064379
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064379 ID=TCONS_00064379|Name=TCONS_00064379|organism=Clytia hemisphaerica|type=transcript|length=583bp
ATTACACCTCGAGTCAAACTAATTGGCTAAAAGATAACTTCTTGAAAGAG
GTAATGACATTGTTAGAAAGAAGTTACCCAGCCCTTAAGGGTATTCAAGA
TCCTATTAAGGGtgctaaaatttctaaaaatgataaGAACAACCTGATGC
CAGTCAACACTTATGATGAAAGTATTCAAATTCACCATGTCAGAAATAAG
CATTTGGTGTTGTCGACTGGTCGAAATGGGAAGGTCTATGTTTATGATAG
CATCTACTCAAAAGCTGATATAAAATTACAAAAGCAGTTGTGTCAAATTT
ACCTAtctcaatgtttatttttctaaagttttgaaGCAACACGGAACTAA
TGACTGTGGTTATTTTTGCATAGCTTATAAACTACTTTTACGCCTTTATT
TTTCACATGTTCTTGCTATACATTTGAAATTTAACACAGTGTGAAAGGGT
GGTTGGGCGGACCAGAcgctttttatgtttttataagcataacactaAGC
ATATTCCAGGCTCGGATATGGAGAAAATTAAATgttGTTGTTACCCTTCA
AGTAACCTCAAATGGATCGAAAATTCAAGACTA
Run BLAST on NCBI

protein sequence of TCONS_00064379-protein

>TCONS_00064379-protein ID=TCONS_00064379-protein|Name=TCONS_00064379-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
YTSSQTNWLKDNFLKEVMTLLERSYPALKGIQDPIKGAKISKNDKNNLMP
VNTYDESIQIHHVRNKHLVLSTGRNGKVYVYDSIYSKADIKLQKQLCQIY
LSQCLFF
Run BLAST on NCBI

transcript from alignment at scaffold_412:11173..11914-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064379 ID=TCONS_00064379|Name=TCONS_00064379|organism=Clytia hemisphaerica|type=transcript|length=742bp|location=Sequence derived from alignment at scaffold_412:11173..11914- (Clytia hemisphaerica)
ATTACACCTCGAGTCAAACTAATTGGCTAAAAGATAACTTCTTGAAAGAG
GTAATGACATTGTTAGAAAGAAGTTACCCAGCCCTTAAGGGTATTCAAGA
TCCTATTAAGGGTGCTAAAATTTCTAAAAATGATAAGAACAACCTGATGC
CAGTCAACACTTATGATGAAAGTATTCAAATTCACCATGTCAGAAATAAG
CATTTGGTGTTGTCGACTGGTCGAAATGGGAAGGTCTATGTTTATGATAG
CATCTACTCAAAAGCTGATATAAAATTACAAAAGCAGTTGTGTCAAATTT
ACCTATCTCAATGTTTATTTTTCTAAAGTTTTGAAGCAACACGGAACTAA
TGACTGTGGTTATTTTTGCATAGCTTATAAACTACTTTTACGCCTTTATT
TTTCACATGTTCTTGCTATACATTTGAAATTTAACACAGTGTGAAAGGGT
GGTTGGGCGGACCAGACGCTTTTTATGTTTTTATAAGCATAACACTAAGC
ATATTCCAGGCTCGGATATGGAGAAAATTAAATGTAAGTTTTCACCAAGT
TTTCGCGAGCCAATTTCTTTCAAAAATANNNNNNNNCAGCAGGGGGGTCT
ATGTTCTATGTTCCCAGCACCTTCGCAGCCTCAAGTGTAACGCTGTTGGT
TTCTGTGTGCCTTTTTCCTTCTTGGCTTTTTTTTAATTTCAGGTTGTTGT
TACCCTTCAAGTAACCTCAAATGGATCGAAAATTCAAGACTA

Coding sequence (CDS) from alignment at scaffold_412:11173..11914-

>TCONS_00064379 ID=TCONS_00064379|Name=TCONS_00064379|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_412:11173..11914- (Clytia hemisphaerica)
TACACCTCGAGTCAAACTAATTGGCTAAAAGATAACTTCTTGAAAGAGGT
AATGACATTGTTAGAAAGAAGTTACCCAGCCCTTAAGGGTATTCAAGATC
CTATTAAGGGTGCTAAAATTTCTAAAAATGATAAGAACAACCTGATGCCA
GTCAACACTTATGATGAAAGTATTCAAATTCACCATGTCAGAAATAAGCA
TTTGGTGTTGTCGACTGGTCGAAATGGGAAGGTCTATGTTTATGATAGCA
TCTACTCAAAAGCTGATATAAAATTACAAAAGCAGTTGTGTCAAATTTAC
CTATCTCAATGTTTATTTTTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040364XLOC_040364Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064379-proteinTCONS_00064379-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064379-exon-scaffold_412-1575043694:11382..11914TCONS_00064379-exon-scaffold_412-1575043694:11382..11914Clytia hemisphaericaexon
TCONS_00064379-exon-scaffold_412-1575043694:11173..11222TCONS_00064379-exon-scaffold_412-1575043694:11173..11222Clytia hemisphaericaexon
TCONS_00064379-exon-scaffold_412-1510915933:11382..11914TCONS_00064379-exon-scaffold_412-1510915933:11382..11914Clytia hemisphaericaexon
TCONS_00064379-exon-scaffold_412-1510915933:11173..11222TCONS_00064379-exon-scaffold_412-1510915933:11173..11222Clytia hemisphaericaexon
TCONS_00064379-exon-scaffold_412-1491911889:11382..11914TCONS_00064379-exon-scaffold_412-1491911889:11382..11914Clytia hemisphaericaexon
TCONS_00064379-exon-scaffold_412-1491911889:11173..11222TCONS_00064379-exon-scaffold_412-1491911889:11173..11222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_412supercontigscaffold_412:11173..11914 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.989759	0.705058	0.369916	0.251128	2.75563	1.5224	1.44067	1.73861	2.30203	3.45807	2.77674	1.6298	3.31149	2.12034	4.47459	4.4879	4.72594	6.32414	1.64796	2.02092	5.13077	3.6815	2.32421	3.88362	1.52141	2.15424	0.840083	1.66232	0.812552	0.46325
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064379 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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