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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064369 ID=TCONS_00064369|Name=TCONS_00064369|organism=Clytia hemisphaerica|type=transcript|length=823bp
CGATTAATGAGGTAGAATATTATTGCTGATATTGttgttttttcaaaaca
cCTTATACCTTATGTAACACGAGAATCAGGATGAGCACGAAGAACGATAT
TTAAGagctaaaagaagaaaatgcttctttgaaagaagaaaatgaaaagc
tTCGACTTCAACTCGAAAAGATGACAACGAGTGACCAACATCCAGCAAAA
GAGAGCTCGATATCGGTCAGGGAATTGGAGGACGAGAAAGATGCTTTGGA
GATGAAACACATGAATGAATGGATGGAACAAGCTCCAAAATTCTTCCCAA
AGGATGGCAAAGATGAAGtTTCAGAGGTGGATGAGGAAACATCCTATCGT
GAATGGTACCAATGCATGTCTCAAGGGATGAAAAACGATCGCCCTTATAC
CGATTTAGAATCTATTTTTGTGCGAAAAGTATTCGGAAAGGCGCAGTCGT
GGGTGGACGTGTGGGCGACAAGCAGGGCGGATGCAAATCCATGCCACCCG
AACCACCTTCACGTGACCAGCATGTCAACGTGTTGGGTTCACAAAATTAG
ACTGATTCATCCCACCGATAAAAGAAAGAGTTTGGTAAAGGATGCATTTT
GGGATTGTGAATATAACCCAGCGAACAACGAAATTGtcgaaaactgtttt
tttgatAAGGTACCAGAAGATATGTTTTATGGAAAACATAACTCGATTGT
AGCGCAATTAATTCTCAATAATTAGGTAACGATGTTTAAGAAGAGGGTAG
ACAGTTTTTATGCATTATATTGATTGTATATAATTTTGACGAATGACCTT
CgaaaaacaaaatgtaaaaCGAT Run BLAST on NCBI protein sequence of TCONS_00064369-protein >TCONS_00064369-protein ID=TCONS_00064369-protein|Name=TCONS_00064369-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MTTSDQHPAKESSISVRELEDEKDALEMKHMNEWMEQAPKFFPKDGKDEV
SEVDEETSYREWYQCMSQGMKNDRPYTDLESIFVRKVFGKAQSWVDVWAT
SRADANPCHPNHLHVTSMSTCWVHKIRLIHPTDKRKSLVKDAFWDCEYNP
ANNEIVENCFFDKVPEDMFYGKHNSIVAQLILNN Run BLAST on NCBI transcript from alignment at scaffold_412:71951..73582+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064369 ID=TCONS_00064369|Name=TCONS_00064369|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at scaffold_412:71951..73582+ (Clytia hemisphaerica)
CGATTAATGAGGTAGAATATTATTGCTGATATTGGTAAGTTTTTATGTGT
TGTGTGGGAAAAAcagaggaagaaaaaaaatgtatacGAATAAGGATGTG
TCTATATTGCAGTTCTTACTCTTGGAAAGTTCGATGTTAGTTAGCAAAAT
GTTgcgaaaagaaaatattttactttgCTTTCACCTTTTGCATTCATATT
ACTgtattggtttttttttttcacttatttttttcacaaagTGTTTCGAT
TTCAAGTTATTGCTTTAGAACCCTTTTTGCTACCATTATAGGATTTTCCC
TACATTTCtagttgttttttcaaaacacCTTATACCTTATGTAACACGAG
AATCAGGATGAGCACGAAGAACGATATTTAAGagctaaaagaagaaaatg
cttctttgaaagaagaaaatgaaaagctTCGACTTCAACTCGAAAAGATG
ACAACGAGTGACCAACATCCAGCAAAAGAGAGCTCGATATCGGTCAGGGA
ATTGGAGGACGAGAAAGATGCTTTGGAGATGAAACACATGAATGAATGGA
TGGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCAAAGATGAAGGTAAC
ATAGTTGCCCGTTTAATCCCAGTATGGAGTCCTCGGGTCTAACTACCAAA
ACGACCCTTTGCCTTTTCTTTTCCACAATTTGCATTGCAGGTGCATTGCC
TACCCGGGGgtggggggcactcgatttttaaacgacggtatgtgccgcca
aaaaattGGCTCTctaaatcggacccttacagtgcagtgaaaggtgcatt
ttaccgaacgtttctgacccttacagtgtttTTTGGTTGTATATTATCtt
ttattttgctgaagccacccaaaaatgagcctgagatgtcgaAAACAATG
tgcaaaaacaaatcaaaatgaatgcgagtcaaaactataaaagtacatca
aatttttacagtgcatccagctaaaagaagacccttgtagACGAAAAACC
TACCCAgaagggcggcacatgccgttggtcggaccatatgagtatCTAAT
ACAAAGTTAACgagagaaaaattttatcacTTCAAAACATTACTTGGAGT
GAagataaatttgattttcttttccagtTTCAGAGGTGGATGAGGAAACA
TCCTATCGTGAATGGTACCAATGCATGTCTCAAGGGATGAAAAACGATCG
CCCTTATACCGATTTAGAATCTATTTTTGTGCGAAAAGTATTCGGAAAGG
CGCAGTCGTGGGTGGACGTGTGGGCGACAAGCAGGGCGGATGCAAATCCA
TGCCACCCGAACCACCTTCACGTGACCAGCATGTCAACGTGTTGGGTTCA
CAAAATTAGACTGATTCATCCCACCGATAAAAGAAAGAGTTTGGTAAAGG
ATGCATTTTGGGATTGTGAATATAACCCAGCGAACAACGAAATTGtcgaa
aactgtttttttgatAAGGTACCAGAAGATATGTTTTATGGAAAACATAA
CTCGATTGTAGCGCAATTAATTCTCAATAATTAGGTAACGATGTTTAAGA
AGAGGGTAGACAGTTTTTATGCATTATATTGATTGTATATAATTTTGACG
AATGACCTTCgaaaaacaaaatgtaaaaCGAT Coding sequence (CDS) from alignment at scaffold_412:71951..73582+ >TCONS_00064369 ID=TCONS_00064369|Name=TCONS_00064369|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_412:71951..73582+ (Clytia hemisphaerica)
ATGACAACGAGTGACCAACATCCAGCAAAAGAGAGCTCGATATCGGTCAG
GGAATTGGAGGACGAGAAAGATGCTTTGGAGATGAAACACATGAATGAAT
GGATGGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCAAAGATGAAGtT
TCAGAGGTGGATGAGGAAACATCCTATCGTGAATGGTACCAATGCATGTC
TCAAGGGATGAAAAACGATCGCCCTTATACCGATTTAGAATCTATTTTTG
TGCGAAAAGTATTCGGAAAGGCGCAGTCGTGGGTGGACGTGTGGGCGACA
AGCAGGGCGGATGCAAATCCATGCCACCCGAACCACCTTCACGTGACCAG
CATGTCAACGTGTTGGGTTCACAAAATTAGACTGATTCATCCCACCGATA
AAAGAAAGAGTTTGGTAAAGGATGCATTTTGGGATTGTGAATATAACCCA
GCGAACAACGAAATTGtcgaaaactgtttttttgatAAGGTACCAGAAGA
TATGTTTTATGGAAAACATAACTCGATTGTAGCGCAATTAATTCTCAATA
ATTAGATGACAACGAGTGACCAACATCCAGCAAAAGAGAGCTCGATATCG
GTCAGGGAATTGGAGGACGAGAAAGATGCTTTGGAGATGAAACACATGAA
TGAATGGATGGAACAAGCTCCAAAATTCTTCCCAAAGGATGGCAAAGATG
AAGtTTCAGAGGTGGATGAGGAAACATCCTATCGTGAATGGTACCAATGC
ATGTCTCAAGGGATGAAAAACGATCGCCCTTATACCGATTTAGAATCTAT
TTTTGTGCGAAAAGTATTCGGAAAGGCGCAGTCGTGGGTGGACGTGTGGG
CGACAAGCAGGGCGGATGCAAATCCATGCCACCCGAACCACCTTCACGTG
ACCAGCATGTCAACGTGTTGGGTTCACAAAATTAGACTGATTCATCCCAC
CGATAAAAGAAAGAGTTTGGTAAAGGATGCATTTTGGGATTGTGAATATA
ACCCAGCGAACAACGAAATTGtcgaaaactgtttttttgatAAGGTACCA
GAAGATATGTTTTATGGAAAACATAACTCGATTGTAGCGCAATTAATTCT
CAATAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064369-exon-scaffold_412-1491911889:71951..71984 | TCONS_00064369-exon-scaffold_412-1491911889:71951..71984 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1510915933:71951..71984 | TCONS_00064369-exon-scaffold_412-1510915933:71951..71984 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1575043694:71951..71984 | TCONS_00064369-exon-scaffold_412-1575043694:71951..71984 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1491911889:72262..72545 | TCONS_00064369-exon-scaffold_412-1491911889:72262..72545 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1510915933:72262..72545 | TCONS_00064369-exon-scaffold_412-1510915933:72262..72545 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1575043694:72262..72545 | TCONS_00064369-exon-scaffold_412-1575043694:72262..72545 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1491911889:73078..73582 | TCONS_00064369-exon-scaffold_412-1491911889:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1510915933:73078..73582 | TCONS_00064369-exon-scaffold_412-1510915933:73078..73582 | Clytia hemisphaerica | exon |
| TCONS_00064369-exon-scaffold_412-1575043694:73078..73582 | TCONS_00064369-exon-scaffold_412-1575043694:73078..73582 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_412 | supercontig | scaffold_412:71951..73582 + |
Blast
The following BLAST results are available for this feature:
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