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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064353 ID=TCONS_00064353|Name=TCONS_00064353|organism=Clytia hemisphaerica|type=transcript|length=1083bp
AAGAACATGGATTCAACTTTCAACCCTGAAAAATGGCAAACGAAACGTTC
TGCAACCACCAAAGCCTTCGTCATTCAATGTTGTGTTCTCGGGATGGAAT
ATTCAGTCACCTTCTTAACCCTTTGGATCTACGTCACCACACTGGTGGAG
ACATCGAATCCGAAATTGTACTATAGTATCATCTCAGCATCCTATCTCTT
ATCCGCCGTTTTATTTTCAATGGTTATCGGACGCTGGGTGGACCGGACAC
GTAACATTCGAGTCATGTTTTTAGTCTGTAACACAAGCGTTATCGTGGGC
AATATAATGTACTCGCTACACCATTCGCCTTGGCTCTTAGTGGTCGGACG
TTTTCTATGCGGGATCGGTGGGCCACTACGATCGGTCATGTCGGGTGAAG
TTTCCCGTTGCTACCCTTCTGATCAAGTCATGAGTAAATTTTCAATGCTC
GGCACAGCGTTTCCCTCGGCTTCATCATGGGTCCTGGCGTAAATTTCGTC
TTCAAAGACGTTGACGTCGTTTGGGGTCCCTTTCACTTGACCTCAGCAAA
CGTGGCTGGTTTTTACATGGCGGCTCTTTTCTTGATCACTCaaatcatag
tttttttcaCTGTGTCCGACTTATCAAAAGAATACGACCTGAAGTCGGAT
GAAGTGCTTTATAAACAATCTGTTCAACAACAAACAGTACCAGCGACTGT
AAGAACAACCTCTGCTCTGGAAGATAAGACTCTGCTCAAAAAAGCACTTT
TAACTTCAAGTTATGGTAGCTACAACGACGGCATTCACAAACAGCACTTA
TTAGTACCAAACCAGTTGCAGAATCTGGAATCTTCCACAAATTCAGTCTT
TCTGAATTACGCAAACTCCAGTATTGATAACGTGTCGATAACCTCTCTCC
CAATACCCTACCGTGGACGCAGCGTGACATACGAATCTACACGTAGCTTA
AACGTACATCGTAATCTACTTCTAGACAGTCACACACATGGAGCTTTGAT
CCATTCCACGGTGGGTAGTTCACACCTCCAGAGAAGCGTCGCTGTTGAGA
AAATCGAAAAACCGGCCCTCTTCCCACAAACCT Run BLAST on NCBI protein sequence of TCONS_00064353-protein >TCONS_00064353-protein ID=TCONS_00064353-protein|Name=TCONS_00064353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MGPGVNFVFKDVDVVWGPFHLTSANVAGFYMAALFLITQIIVFFTVSDLS
KEYDLKSDEVLYKQSVQQQTVPATVRTTSALEDKTLLKKALLTSSYGSYN
DGIHKQHLLVPNQLQNLESSTNSVFLNYANSSIDNVSITSLPIPYRGRSV
TYESTRSLNVHRNLLLDSHTHGALIHSTVGSSHLQRSVAVEKIEKPALFP
QT Run BLAST on NCBI transcript from alignment at scaffold_411:118753..119835 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064353 ID=TCONS_00064353|Name=TCONS_00064353|organism=Clytia hemisphaerica|type=transcript|length=1083bp|location=Sequence derived from alignment at scaffold_411:118753..119835 (Clytia hemisphaerica)
AGGTTTGTGGGAAGAGGGCCGGTTTTTCGATTTTCTCAACAGCGACGCTT
CTCTGGAGGTGTGAACTACCCACCGTGGAATGGATCAAAGCTCCATGTGT
GTGACTGTCTAGAAGTAGATTACGATGTACGTTTAAGCTACGTGTAGATT
CGTATGTCACGCTGCGTCCACGGTAGGGTATTGGGAGAGAGGTTATCGAC
ACGTTATCAATACTGGAGTTTGCGTAATTCAGAAAGACTGAATTTGTGGA
AGATTCCAGATTCTGCAACTGGTTTGGTACTAATAAGTGCTGTTTGTGAA
TGCCGTCGTTGTAGCTACCATAACTTGAAGTTAAAAGTGCTTTTTTGAGC
AGAGTCTTATCTTCCAGAGCAGAGGTTGTTCTTACAGTCGCTGGTACTGT
TTGTTGTTGAACAGATTGTTTATAAAGCACTTCATCCGACTTCAGGTCGT
ATTCTTTTGATAAGTCGGACACAGtgaaaaaaactatgatttGAGTGATC
AAGAAAAGAGCCGCCATGTAAAAACCAGCCACGTTTGCTGAGGTCAAGTG
AAAGGGACCCCAAACGACGTCAACGTCTTTGAAGACGAAATTTACGCCAG
GACCCATGATGAAGCCGAGGGAAACGCTGTGCCGAGCATTGAAAATTTAC
TCATGACTTGATCAGAAGGGTAGCAACGGGAAACTTCACCCGACATGACC
GATCGTAGTGGCCCACCGATCCCGCATAGAAAACGTCCGACCACTAAGAG
CCAAGGCGAATGGTGTAGCGAGTACATTATATTGCCCACGATAACGCTTG
TGTTACAGACTAAAAACATGACTCGAATGTTACGTGTCCGGTCCACCCAG
CGTCCGATAACCATTGAAAATAAAACGGCGGATAAGAGATAGGATGCTGA
GATGATACTATAGTACAATTTCGGATTCGATGTCTCCACCAGTGTGGTGA
CGTAGATCCAAAGGGTTAAGAAGGTGACTGAATATTCCATCCCGAGAACA
CAACATTGAATGACGAAGGCTTTGGTGGTTGCAGAACGTTTCGTTTGCCA
TTTTTCAGGGTTGAAAGTTGAATCCATGTTCTT Coding sequence (CDS) from alignment at scaffold_411:118753..119835 >TCONS_00064353 ID=TCONS_00064353|Name=TCONS_00064353|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_411:118753..119835 (Clytia hemisphaerica)
GGTTTGTGGGAAGAGGGCCGGTTTTTCGATTTTCTCAACAGCGACGCTTC
TCTGGAGGTGTGAACTACCCACCGTGGAATGGATCAAAGCTCCATGTGTG
TGACTGTCTAGAAGTAGATTACGATGTACGTTTAAGCTACGTGTAGATTC
GTATGTCACGCTGCGTCCACGGTAGGGTATTGGGAGAGAGGTTATCGACA
CGTTATCAATACTGGAGTTTGCGTAATTCAGAAAGACTGAATTTGTGGAA
GATTCCAGATTCTGCAACTGGTTTGGTACTAATAAGTGCTGTTTGTGAAT
GCCGTCGTTGTAGCTACCATAACTTGAAGTTAAAAGTGCTTTTTTGAGCA
GAGTCTTATCTTCCAGAGCAGAGGTTGTTCTTACAGTCGCTGGTACTGTT
TGTTGTTGAACAGATTGTTTATAAAGCACTTCATCCGACTTCAGGTCGTA
TTCTTTTGATAAGTCGGACACAGtgaaaaaaactatgatttGAGTGATCA
AGAAAAGAGCCGCCATGTAAAAACCAGCCACGTTTGCTGAGGTCAAGTGA
AAGGGACCCCAAACGACGTCAACGTCTTTGAAGACGAAATTTACGCCAGG
ACCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064353-exon-scaffold_411-1491911889:118753..119835 | TCONS_00064353-exon-scaffold_411-1491911889:118753..119835 | Clytia hemisphaerica | exon |
| TCONS_00064353-exon-scaffold_411-1510915933:118753..119835 | TCONS_00064353-exon-scaffold_411-1510915933:118753..119835 | Clytia hemisphaerica | exon |
| TCONS_00064353-exon-scaffold_411-1575043694:118753..119835 | TCONS_00064353-exon-scaffold_411-1575043694:118753..119835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_411 | supercontig | scaffold_411:118753..119835 . |
Blast
The following BLAST results are available for this feature:
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