TCONS_00064346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064346
Unique NameTCONS_00064346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064346 ID=TCONS_00064346|Name=TCONS_00064346|organism=Clytia hemisphaerica|type=transcript|length=1222bp
CATAGAGCTGCAAAAAAACTAAAGGATGGCAACTGTGAGGAAGATTGGTT
TATTAACACACACATCGAAGAATTTCCTTAAATGTCTAGAAAGTCAATTA
CCAAAGAATGGTTACCATCTACAAGAAATTATGTTTGATCAAGAGAAAAT
AAACAATTCAAAAGACTGCAAGGAAGTTGAGCCTtggaaaagatgaaaaa
tgatgtGGAATCAATGGATATTGTGATAGCTGATGGTCGTTTGATGCCCA
AAATATTACATAAAGTGAACAAAGTCAAATGGATTCACTTGATTTGGGCT
GGTGTTGATCCAGTCGTGGATAGTCTAGCTGGAAAGTCTATTCCATCAAT
GCCAGTAACACGATTTGGAGGTTACTTCGGTGAACATATGGCTGAATATG
CAATCAGTCATATTGTAGGTTATGAAAGAGGTTCATACACAATATATGAa
aaccaaaaacaaaataattgGCTGAAATTAAGCGAACAACTCGGTGAATA
TCGTATGATCAAAGATCTGAAGTTCACCATTCTCGGGTGTGGTGATATTG
GACACACAATTGCACGTCATCTTAAACAATTTGGTGGTACAGTTTACGGT
ATGGTCAGACAAACCAGAAATTCCAATTCCTCAGACTATGTTGATCAATA
TTTCACATTTGATGAATTACCAGAGTTTCTCAAAAAAAGTGATTATGTAT
GCAATGTACTGCCATCTACTCCAGGAACTAGAAACTTGTTGACACCTGAG
CTACTTAAGAATTGCCAAAACACAGTGTTTATGAATCTTGGTCGTGGAGA
TGTCATCAAGGAAGATAATATTCTCAGAGCTCTAGAAGAGAATCGGTTTA
AACAAGCCATTTTAGATGTGTTTGCGGTAGAACCTTTACCTAAAGAAAGC
AAGCTGTGGAGTCATGAGAGAGTCACAATAACACCACATTGTTCAGGCCA
AACACAAATACAAGAGaCTGTTGCATCTTTCTTGGAACAACTGAAGCTGT
TTGAAAACAATGAACCCTTGGAATTCTTAGTTGATTGGAAGAGTGGTTAT
TAAGAATATCATTTTTTAGGATGTATAatattgtttttcttaaaaattat
tGGAAACGATGAGTCACAAATGGACCATAAGATGTACTGATTGTTATATA
ATCCATGTTGTGATTATTTATATTTATCTACAATACATTGCGTTGCATGT
AGATTCTGTCAGCATAAACAGT
Run BLAST on NCBI

transcript from alignment at scaffold_411:197536..201747-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064346 ID=TCONS_00064346|Name=TCONS_00064346|organism=Clytia hemisphaerica|type=transcript|length=4212bp|location=Sequence derived from alignment at scaffold_411:197536..201747- (Clytia hemisphaerica)
CATAGAGCTGCAAAAAAACTAAAGGATGGCAACTGTGAGGAAGATTGGTT
TATTAACACACACATCGAAGAATTTCCTTAAATGTCTAGAAAGTCAATTA
CCAAAGAATGGTTACCATCTACAAGAAATTATGTTTGATCAAGAGAAAAT
AAACAATTCAAAAGACTGCAAGGAAGTTGAGGCAGGTATATAGCTCCAAA
TTCTGATGTTGTTGTTTTTTTCAACACACCTTGGTTACCATCTCTATTTG
TTCCTTAATATTATTCTGGAATAAATGTCTATGTTTTGGGATGTTGAATT
TTAAACTCTTTCTATATACAGCCTTGGAAAAGATGAAAAATGATGTGGAA
TCAATGGATATTGTGATAGCTGATGGTCGTTTGATGCCCAAAATATTACA
TAAAGTGAACAAAGTCAAATGGATTCACTTGATTTGGGCTGGTAATTTCT
GCTTTGTTTATTAATAATCTGTTGGAGAAGGAAAAATCCAAATTCCAAAA
TTTCCGATATGGTTTCCTTTTAGGCCGAAATAAAAAAGCCTCTTGTTTCT
GGAAATCAGCCCGGTGAACTTTTCTTTAAGAGTCCCCTGGCCATAAAAAA
ATATGTTTGGATTGATCCAGGATTCTTTGGAGAAACAGACCAATAGTAAA
AAAAATTGTATTTTTCCATAGTAAACTACCTTATTACACAAATATTACTA
GTCATTTTACTAACACGAATTGGAAACTTTCACGAGTGCTAATAAAAACC
CCCTTAATTAAAACCAGCCACTGTTTACTTGAAAAGCTGAAAAATTTGTG
TTGATTTCAAATCGTGCAAATTTCAAGGCCGTTGAATACTTGCCTAGTAA
TTTTCATTTAATAAGGTAGTCTTTTGCGACCAACTGGGTAAGTTTTTTTT
GTCACCTGCATTTCCATTTTTCCCTTTAAATATATCAATGATAAGTTTGA
AAAAAATGATTGTTTCAGAAGTTTTAAATTTGTTTAATATATTGTGTTTG
CAAAGTAGTTTGCAATGTCATAAATACTTCCTTCACTTTCAAAACAATAA
CAGAATAATGCATGATCAGTAAGATTAATATCAGGCAAATTATATTCTTA
GGTGTTGATCCAGTCGTGGATAGTCTAGCTGGAAAGTCTATTCCATCAAT
GCCAGTAACACGATTTGGAGGTTACTTCGGTGAACATATGGCTGAATATG
CAATCAGTCATATTGTAGGTTATGAAAGAGGTTCATACACAATATATGAA
AACCAAAAACAAAATAATTGGTAAGGGAAGAGCTGAAGCTTTGCTGAGTG
TTATCAGCCTTAGTCTTTAATTGAATATAATGGATGTACAAAGTGAAAGC
AGATTATTATAAAATCAAATCTAGGCTTATTGAATTACATAAAATATGCT
CATTTCAATTTTTTGTTGGACTTGCCAAGATTCTTCCCACAACCTTTTAT
ATCCAAAGTCCTGCGAAAATGAAAAAAATAGGTTAGCTACCCCTTTTTTA
CCTTAATTCACTGGAATGATATTAAGAAGGGTTTTAAAATATGTTGTGTA
ATTAAAAAAAAAATTATGCTGCATTGGAACATTTATTTATAAATAGGCTG
AAATTAAGCGAACAACTCGGTGAATATCGTATGATCAAAGATCTGAAGTT
CACCATTCTCGGGTGTGGTGATATTGGACACACAATTGCACGTCATCTTA
AACAATTTGGTGGTACAGTTTACGGTATGGTCAGACAAACCAGAAATTCC
AATTCCTCAGACTATGTTGATCAATATTTCACATTTGATGAATTACCAGA
GTTTCTCAAAAAAAGTGATTATGTATGCAATGTACTGCCATCTACTCCAG
GAACTAGAAACTTGTTGACACCTGAGCTACTTAAGAATTGCCAAAACACA
GTGTTTATGAATCTTGGTCGTGGAGATGTCATCAAGGAAGATAATATTCT
CAGAGCTCTAGAAGAGAATCGGTTTAAACAAGCCATTTTAGATGTGTTTG
CGGTAGAACCTTTACCTAAAGAAAGCAAGCTGTGGAGTCATGAGAGAGTC
ACAATAACACCACATTGTTCAGGCCAAACACAAATACAAGAGGTATTATA
TGGAAATATACTCCCTTTGGTATATGGTAATCTTAAAGCAAATTATTTTG
GTCCTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTTTGTCC
GTTCGTCCGTTCGTCCGTTCGTTCGTTAGTTATTAGCTTTCCTCATGATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTAGCTTTCCTC
ATGATTGGCTCGTTAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACT
ATAAACCCTCGAATGTGACGGAGCCCGAATTTCAAAAAAAAAATTTTTTG
GGCAAATTTGGGCAAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTGT
GAAAAATTAGGTCGTTAATTTTTTCTGATTTTTTGCACAAAGATGCATAA
CTATAAACCCTCGAATGTGACGGAGCCCGAATTTCAAAAAAAAATTTTTT
GGGCAAATTTGGGCAAAAAAACGGCTAAAAAACGGGTTTTTTGGACTTTG
TGAAAAATTAGGTCGTTAATTTTTTCTGATTTTTTGTATGAAAGTAGGGT
ACCATCGTAGGTAAAAGATGGCTTAAGCAGATTTTTGCAAAAAAATTTTG
TTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCAT
ACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTTATGAGATAGATGT
TTTTTTTGCTCATGAGGGCTTACTTTTAAAGAATATGTGTGTTTCGATTT
GTTTTTTTTCTGAATTTTTGCATGAAAGTAGGTTAAAGATGGCTCAAGCA
GATTTTTGTAAAAAAAAGAATTTTTCAGCTCAAAAAACGCATATTTATCT
ATAAGAATCACTATTAATAAGCATACATCAATGTTCTGAAAATTACTGAA
TTTTTTGATGAGATATGTATTTTTGCTCTCGAAGTCTTGAATATGAAAGA
AATTTTGGTTTCTAAACGTGTTTTTTTTTATAAGAAACAAACGACTAATT
TTAATAGATCGTCACTATTTGTCTTCTAAATGATTGTTTAATGGTCACGC
TTATGTAGATACCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCC
ATAAAAGTATCACTTTTTGTATTGTAGAATTCTTCTGTTGAATATTATCT
GGAAGACAAATAATGCCCTTATTCTACCCTTTTTCTGTCATTTTTCGAAC
AATTCTACTCCTCCATTTTCAAAACAAGACTTGGCTTTGTGTCTGGTTTT
TGGACCTACACTGGTGGGTGGAGGTCCTTTAAATTAACCGATGTTCGTCC
GTCCGTTCGTCTGTTACCAGCTTTTCTTGGGATTGGTTTATTAGTTTTTT
TTGATTTTTTGCACAGTCATGCAAAATGGTGATTCCCAAAAAGTGATAGA
GCCTGATTTTTCGGAAAATTCTTTTTGATCAGATCTGTTCTTATTTGGGG
AAATTCCCTTATGTCACTTTTAGGAAAAAAGAGCATTTCTTGTAATTGGA
TTGATATTTGTTTCTGATTTTTTGCACTTTGATGTAAAATGGTAATAATA
ACCGATTTTCAAAAAATATTTTTTTGGGCAAATTCGTGGGTCAAAATGTG
CCTAAAAATGGGGTTTTCTGGACTTGTGATATTGCTTCATTAGTTTTTTT
TTAAAATTTTTGGACAGCTCACTACACTTTTTTACTCTCGTGCTATTTGT
CATATTTTTATCTGATTCTCATCATCAGGTAGGTCCATTCAGCATGTTAC
TTGTTGTGTTTGCATTCTACAATTTAGATTAATTTAATAATTTCTTTCCC
TCTATCAAATGAGATGGGATACCATTTTTCTACCCTGCTGTTTTTATTCA
TTTTAGACTGTTGCATCTTTCTTGGAACAACTGAAGCTGTTTGAAAACAA
TGAACCCTTGGAATTCTTAGTTGATTGGAAGAGTGGTTATTAAGAATATC
ATTTTTTAGGATGTATAATATTGTTTTTCTTAAAAATTATTGGAAACGAT
GAGTCACAAATGGACCATAAGATGTACTGATTGTTATATAATCCATGTTG
TGATTATTTATATTTATCTACAATACATTGCGTTGCATGTAGATTCTGTC
AGCATAAACAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040346XLOC_040346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064346-exon-scaffold_411-1575043694:201567..201747TCONS_00064346-exon-scaffold_411-1575043694:201567..201747Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1575043694:201307..201426TCONS_00064346-exon-scaffold_411-1575043694:201307..201426Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1575043694:200478..200646TCONS_00064346-exon-scaffold_411-1575043694:200478..200646Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1575043694:199656..200151TCONS_00064346-exon-scaffold_411-1575043694:199656..200151Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1575043694:197536..197791TCONS_00064346-exon-scaffold_411-1575043694:197536..197791Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1510915933:201567..201747TCONS_00064346-exon-scaffold_411-1510915933:201567..201747Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1510915933:201307..201426TCONS_00064346-exon-scaffold_411-1510915933:201307..201426Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1510915933:200478..200646TCONS_00064346-exon-scaffold_411-1510915933:200478..200646Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1510915933:199656..200151TCONS_00064346-exon-scaffold_411-1510915933:199656..200151Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1510915933:197536..197791TCONS_00064346-exon-scaffold_411-1510915933:197536..197791Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1491911889:201567..201747TCONS_00064346-exon-scaffold_411-1491911889:201567..201747Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1491911889:201307..201426TCONS_00064346-exon-scaffold_411-1491911889:201307..201426Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1491911889:200478..200646TCONS_00064346-exon-scaffold_411-1491911889:200478..200646Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1491911889:199656..200151TCONS_00064346-exon-scaffold_411-1491911889:199656..200151Clytia hemisphaericaexon
TCONS_00064346-exon-scaffold_411-1491911889:197536..197791TCONS_00064346-exon-scaffold_411-1491911889:197536..197791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:197536..201747 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.3673	20.7438	13.3176	11.8453	1.43205	0.498431	0.836195	1.00794	2.40123	3.33693	1.13366	1.18236	1.92942	0.00114949	5.43997	3.84718	5.74471	1.84959	1.08835	1.64571	4.40141	4.85152	13.0516	12.992	0.316832	3.02775	1.88411	2.34599	5.20649	7.54355
Blast
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BLAST of TCONS_00064346 vs. Swiss-Prot (Human)
Match: GRHPR (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.608e-18
Identity = 62/215 (28.84%), Postives = 94/215 (43.72%), Query Frame = 1 
Query:  391 AEYAISHIVGYERGSYTIYENQKQNNWLKLSEQ-LGEYRMIKDLKFTILGCGDIGHTIARHLKQFGGTVYGMV-RQTRNSNSSDYVDQYFTFDELPEFLKKSDYVCNVLPSTPGTRNLLTPELLKNCQNT-VFMNLGRGDVIKEDNILRALEENRFKQAILDVFAVEPLPKESKLWSHERVTITPHCSGQTQIQETVASFLEQLKLFEN--NEPL 1020
            AE A+S ++   R      E  K   W       L  Y + +     I+G G IG  IAR LK FG   +    RQ R   ++++  ++ +    PE   +SD++      TP T  L   +  +  + T VF+N+ RGDV+ +D++ +AL   +   A LDV + EPLP    L + +   I PH    T       S L    L      EP+
Sbjct:  112 AELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQS-TVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVS---TPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 322
The following BLAST results are available for this feature:
BLAST of TCONS_00064346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRHPR3.608e-1828.84Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
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