TCONS_00064334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064334
Unique NameTCONS_00064334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064334 ID=TCONS_00064334|Name=TCONS_00064334|organism=Clytia hemisphaerica|type=transcript|length=2400bp
ctcttCGAGAAACAGActgagaccatgttcagacgttatgATTTCGTTTT
Gccccgaaacgaaatgaagccattctattggttacattcaaattttacgt
cacttctaaccaaaaGAATGGCTACATTTCCTTTCGGAGAGCCACGGAAc
agtcacgtgcgaacatggacTGATAAAACGATTTCGTAAAAAATAAATCG
AAAccgtaaaataatttttctataTACAATTCTTATTACAATACACATGA
AAAGAATGgcgtaaatccatttcatcatggatattcttaacttttttggg
aaaatcatcctaaaagattcttacagcattcttaggttaggattctaatt
cagactagatttaacatttagtacatacgtctcaagcataaagtggcatt
tttgtgaaaggagtgagccttacttgggggtaattgacaatttataatcg
aaaatgctcgaaaaatgacattcttagcttgagtaacaaaattccatgat
ggtgatattcttagcatgtttcttaaatttttggccattttcatcatgga
cattcttataaagcttattcttataaaaaaagcattcgTTGATTCTTTAG
TTTTTCAAACTTCAGggtgtccaaaaaaaattggttcTTAATTTGTGAGG
TGGGGGGttaatctaaagaatcctacattTGCTAAAAATAGAcacaaaaa
aacgacaaattccACCATTCACAGCCCCGACCGACGGATAGTTTGTCCAA
CACCGGGGTCCACCCCAATGTTTTGATTCCTCTTTGTCTAACACAAAGAT
TAACTAAATCTGGTtcaaagaacgacaaattacgcatgcgtattatAATG
CAGAATTCTTAGACTGTTTCTAAAGAATCATTTCATTATAACCGGATTTG
AATCAACGGATTTGAATCAATCAAAGCATATTATAAAAACTTATTCTCAG
TTTTTCAATAACGTATTGTAGAGTCAGGGATGAATTtcgaatatttttat
caattctTTTTTATCGGACACATTGTTGGGATCTCTCCATGATTATATAA
CATTGTGTTTAATATTTTGAGACTTCACTTGGCTCTGAAGGACTGAAAAA
TCCTCCCACTGTCCATTTAGCTGTGGTGGTTGAAATTTCTCTTCATAAGT
TcctcaacctcgtccccgtgtaaaccaggctttatttatgttACTTATgg
atcaaaaagctgataatacacagggaacgaggttgtaaGTTCCTATGAAA
CCAGCTTTACAGTAGAATAGGGGGGAGGTTTTtacattaaaaaatcaaaa
tttcaaaaagtctcaAATATTATACACAGTCTTGTACAAGTTTTTCAACT
TTGGTTAGATTCCGGAATTTCCACCGTAATGGAATCAAGTTTAATAACAA
ACATCAAAAAGTTCATTCTTCAGGCAACCAAAACGGAGACAACTAACTAA
ATAAAGATGAAATAAGATGAGCTATTTTCAATAAATGAAAATACCGTAAA
AAACTGTATCATTTCAAATATCTGAAAAAAGATCAAGATTCTGACGAATC
GAAAGTAGATATTGAATTTGTTTCAAATGTCCTTTCTGAGTCTAATAACA
CATGTTCTGCGGTGTCATTTAAAGTCCGGTTTACACTTACCAGCTCATGT
TCGCTATTAATAGTAGTCTGGTTAGTAGGACAACTTGTAGATTGACCCAT
TAAATTAGGTTCTTTTTTAGTCCATAGCTCCTTTTCGTTTTTTGggtctt
tatttttttcaatattcgTATTTGTTTGTCGGCTTTGCATTTTAATCTGG
CCAAGATTATGCTGCAACGATTGTACTTGCTGGTAGATTTGTTCTGCGTG
AATTTCCGGTGTCGTGTGTTGACGGACACTACCGTCCTCTGATGCCGTTC
CCCGAGAATCAACTTGAGTAGCCGATGAGACGGTTTCTACGAAGGCTGAA
AATGAATCGTCACCATCCGCTACCGATCTAACCCGGACGTCTAGTTCCGG
TCGTATTTGAGTCGGTCCGTAATGAAATTCATTATCGACTTCTACCCGAG
GGTTCTCACTTACTGATATTGGAGCTGTTCCGGTATTTTCAGATGACTCG
GCTCCTTCCGTAGCATTAATTGGAGTTTCTGGTTGTTCCGTATTCCCGGT
GACTCCGACATTTACTCTTTGATGTACTTGGTGAATAAAGTCACGTACCA
TTTGCACGAATTGTCCTTCAcccgaaaatacaaaaacacGGTTCCCATTC
TCATTGGTAGAAATTTCTCTCACCCTTTGGCCATCCTCTGCAACCACGCC
TTGCGGTGAATTTCCAGTACCGCCATTAGCGCCCGTTCCGTTATTTGTTT
CACCCTGTGCACCGCCCTCTGCGTTGTTGGGTTGATTCTCAGCATCCTGT
Run BLAST on NCBI

transcript from alignment at scaffold_411:59170..61649+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064334 ID=TCONS_00064334|Name=TCONS_00064334|organism=Clytia hemisphaerica|type=transcript|length=2480bp|location=Sequence derived from alignment at scaffold_411:59170..61649+ (Clytia hemisphaerica)
ctcttCGAGAAACAGActgagaccatgttcagacgttatgATTTCGTTTT
Gccccgaaacgaaatgaagccattctattggttacattcaaattttacgt
cacttctaaccaaaaGAATGGCTACATTTCCTTTCGGAGAGCCACGGAAc
agtcacgtgcgaacatggacTGATAAAACGATTTCGTAAAAAATAAATCG
AAAccgtaaaataatttttctataTACAATTCTTATTACAATACACATGA
AAAGAATGgcgtaaatccatttcatcatggatattcttaacttttttggg
aaaatcatcctaaaagattcttacagcattcttaggttaggattctaatt
cagactagatttaacatttagtacatacgtctcaagcataaagtggcatt
tttgtgaaaggagtgagccttacttgggggtaattgacaatttataatcg
aaaatgctcgaaaaatgacattcttagcttgagtaacaaaattccatgat
ggtgatattcttagcatgtttcttaaatttttggccattttcatcatgga
cattcttataaagcttattcttataaaaaaagcattcgTTGATTCTTTAG
TTTTTCAAACTTCAGggtgtccaaaaaaaattggttcTTAATTTGTGAGG
TGGGGGGttaatctaaagaatcctacattTGCTAAAAATAGAcacaaaaa
aacgacaaattccACCATTCACAGCCCCGACCGACGGATAGTTTGTCCAA
CACCGGGGTCCACCCCAATGTTTTGATTCCTCTTTGTCTAACACAAAGAT
TAACTAAATCTGGTtcaaagaacgacaaattacgcatgcgtattatAATG
CAGAATTCTTAGACTGTTTCTAAAGAATCATTTCATTATAACCGGATTTG
AATCAACGGATTTGAATCAATCAAAGCATATTATAAAAACTTATTCTCAG
TTTTTCAATAACGTATTGTAGAGTCAGGGATGAATTtcgaatatttttat
caattctTTTTTATCGGACACATTGTTGGGATCTCTCCATGATTATATAA
CATTGTGTTTAATATTTTGAGACTTCACTTGGCTCTGAAGGACTGAAAAA
TCCTCCCACTGTCCATTTAGCTGTGGTGGTTGAAATTTCTCTTCATAAGT
TcctcaacctcgtccccgtgtaaaccaggctttatttatgttACTTATgg
atcaaaaagctgataatacacagggaacgaggttgtaaGTTCCTATGAAA
CCAGCTTTACAGTAGAATAGGGGGGAGGTTTTtacattaaaaaatcaaaa
tttcaaaaagtctcaAATATTATACACAGTCTTGTACAAGTTTTTCAACT
TTGGTTAGATTCCGGAATTTCCACCGTAATGGAATCAAGTTTAATAACAA
ACATCAAAAAGTTCATTCTTCAGGCAACCAAAACGGAGACAACTAACTAA
ATAAAGATGAAATAAGATGAGCTATTTTCAATAAATGAAAATACCGTAAA
AAACTGTATCATTTCAAATATCTGAAAAAAGATCAAGATTCTGACGAATC
GAAAGTAGATATTGAATTTGTTTCAAATGTCCTTTCTGAGTCTAATAACA
CATGTTCTGCGGTGTCATTTAAAGTCCGGTTTACACTTACCAGCTCATGT
TCGCTATTAATAGTAGTCTGGTTAGTAGGACAACTTGTAGATTGACCCAT
TAAATTAGGTTCTTTTTTAGTCCATAGCTCCTTTTCGTTTTTTGggtctt
tatttttttcaatattcgTATTTGTTTGTCGGCTTTGCATTTTAATCTGG
CCAAGATTATGCTGCAACGATTGTACTTGCTGGTAGATTTGTTCTGCGTG
AATTTCCGGTGTCGTGTGTTGACGGACACTACCGTCCTCTGATGCCGTTC
CCCGAGAATCAACTTGAGTAGCCGATGAGACGGTTTCTACGAAGGCTGAA
AAATCGTNATCCCGTCTTCTGATGCCGTTCCCCGAGAATCAACTTGAGTA
GCCGAAGAGACGGTTTCTAGGAAGGCTGAAAATGAATCGTCACCATCCGC
TACCGATCTAACCCGGACGTCTAGTTCCGGTCGTATTTGAGTCGGTCCGT
AATGAAATTCATTATCGACTTCTACCCGAGGGTTCTCACTTACTGATATT
GGAGCTGTTCCGGTATTTTCAGATGACTCGGCTCCTTCCGTAGCATTAAT
TGGAGTTTCTGGTTGTTCCGTATTCCCGGTGACTCCGACATTTACTCTTT
GATGTACTTGGTGAATAAAGTCACGTACCATTTGCACGAATTGTCCTTCA
cccgaaaatacaaaaacacGGTTCCCATTCTCATTGGTAGAAATTTCTCT
CACCCTTTGGCCATCCTCTGCAACCACGCCTTGCGGTGAATTTCCAGTAC
CGCCATTAGCGCCCGTTCCGTTATTTGTTTCACCCTGTGCACCGCCCTCT
GCGTTGTTGGGTTGATTCTCAGCATCCTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040338XLOC_040338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064334-exon-scaffold_411-1491911889:59170..61113TCONS_00064334-exon-scaffold_411-1491911889:59170..61113Clytia hemisphaericaexon
TCONS_00064334-exon-scaffold_411-1510915933:59170..61113TCONS_00064334-exon-scaffold_411-1510915933:59170..61113Clytia hemisphaericaexon
TCONS_00064334-exon-scaffold_411-1575043694:59170..61113TCONS_00064334-exon-scaffold_411-1575043694:59170..61113Clytia hemisphaericaexon
TCONS_00064334-exon-scaffold_411-1491911889:61194..61649TCONS_00064334-exon-scaffold_411-1491911889:61194..61649Clytia hemisphaericaexon
TCONS_00064334-exon-scaffold_411-1510915933:61194..61649TCONS_00064334-exon-scaffold_411-1510915933:61194..61649Clytia hemisphaericaexon
TCONS_00064334-exon-scaffold_411-1575043694:61194..61649TCONS_00064334-exon-scaffold_411-1575043694:61194..61649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_411supercontigscaffold_411:59170..61649 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.775565	0.56404	0.654595	0.335305	0.046132	0	0	0.0466017	0.0817225	0.0320549	0.220555	0.0250336	0.0892495	0	0.217564	0.0775359	0.0536996	0.312572	0.178629	0.0253071	0.391757	0.0819967	0.762521	0.416782	0	0	0.144778	0.124351	0.522306	0.775418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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