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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064333 ID=TCONS_00064333|Name=TCONS_00064333|organism=Clytia hemisphaerica|type=transcript|length=2657bpRun BLAST on NCBI protein sequence of TCONS_00064333-protein >TCONS_00064333-protein ID=TCONS_00064333-protein|Name=TCONS_00064333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=769bp MIFTSVTKDMYGHYQCYGENNLGNVSDSFWVYVNCAPNVTATTLVQPSVTRun BLAST on NCBI transcript from alignment at scaffold_411:26576..40166+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064333 ID=TCONS_00064333|Name=TCONS_00064333|organism=Clytia hemisphaerica|type=transcript|length=13591bp|location=Sequence derived from alignment at scaffold_411:26576..40166+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_411:26576..40166+ >TCONS_00064333 ID=TCONS_00064333|Name=TCONS_00064333|organism=Clytia hemisphaerica|type=CDS|length=25410bp|location=Sequence derived from alignment at scaffold_411:26576..40166+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064333 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 1.755e-26 Identity = 190/810 (23.46%), Postives = 318/810 (39.26%), Query Frame = 2
Query: 215 TIVSSNSSITYIQND--MIFTSVTKDMYGHYQCYGENNLGNVSDSFWVYVNCAPNVTATTLVQPSVTPAE-----GQSVTYTCTVEGFPKPTVTWQNDGVAMTTNVTEVSASNATGLWVVTSEIEIWWHRSHSGVIGCYATNGIGYADNETTNVFLTYQPEISLVALDRDTYELGGV-------EIFSTYVNDSVLLYCNITSYPQLVSSTAGPVRWFKDNVEITSNVIKFNESVIDNTFYYTTTSAIRIDPIEETENSKEYRCEA-SVSGFTSISKTIRVLV---LNGMLTNVPDTPLCGALGDSIFFDWQYTYTQPYDDIVWEKYIDGNETVEFLVGKLQPTAPGLNMKNDTKYTYEASTKSGLYIHHIELSDEGYY-GVKINFDNSAEVFHHVTYLTVVVNPHSMSITPNVATVYEQENITLTCTATGKPAPDLFWYFEDDWTTALTNTSDYLITDWSTDTVGNETIVTSDLTITSAGHQDVGNYSCGAKNKLTEKRIYRRVDVYYAPR---NTTLNATVNPVHLLSTTLLQCDTDASTEPMYYLIYKDGSLVANVT------DG-IYNISSVAYSDSGNYTCHPYNVMGFGDNATLALEVTAQPILDNYTSPVYGIKPLSS--SLTCTFYGNPAPEITWTKLDGGVLYDNITTETIDKCVGTIVFKTSTVTFNPTELEHYGTYECSADNIYGTVQQNVSLIVHYAVNITRHTLIQEYDNHTTGDTNIVRKCTAVGYPGPLTIQWYLNSLPISRHSASQXXXXXXXXXXXXXXXXXMNTLDKDDLGTLMCLASNSIGTDNETTYFNV 2551
T + SN +I + + + +D G Y C N G + + V V P + L P ++P E ++T C P +++W DG + ++ A+N L + ++I S +G C A+N I D +V + P + +E+G + E +N+ + LYC + P + W+KD +TS+ D ++I P + E++ Y C A + +G S+ +RVLV + G +++P+ + + S + + P W+K DG +E D + + ++ + L I + +++D G Y V N SA+ + + L V V P + TV I+LTC +G P PDL W + TNT LI G T L I A D G Y+C A N+ E + + VY P + + + +V V ++ L+C+++A P+ YK+G ++ T DG + +I SD+G Y C NV G D+ L V P ++ V ++ +S+ +LTC G P P I W K ++ E D I+ S + ++ G Y C A N+ G Q+ L + ++ + D N+ C A G P PL IQW + PI+ + VS+ + + + LT D G C+A+N G ++ NV
Sbjct: 2614 TPLESNRNIRILPGGRTLQILNAQEDNAGRYSCVATNEAGEMIKHYEVKVYIPPIINKGDLWGPGLSPKEVKIKVNNTLTLECEAYAIPSASLSWYKDGQPLKSDDHVNIAANGHTLQIKEAQI------SDTGRYTCVASN-IAGEDELDFDVNIQVPPSF------QKLWEIGNMLDTGRNGEAKDVIINNPISLYCETNAAPPPT------LTWYKDGHPLTSS---------DKVLILPGGRVLQI-PRAKVEDAGRYTCVAVNEAGEDSLQYDVRVLVPPIIKGANSDLPEE-VTVLVNKSALIEC-LSSGSPAPRNSWQK--DGQPLLE-----------------DDHHKFLSNGRI-LQILNTQITDIGRYVCVAENTAGSAKKYFN---LNVHVPPSVIGPKSENLTVVVNNFISLTCEVSGFPPPDLSWLKNEQPIKLNTNT---LIVP------GGRT-----LQIIRAKVSDGGEYTCIAINQAGESKKKFSLTVYVPPSIKDHDSESLSVVNVREGTSVSLECESNAVPPPVITW-YKNGRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGR-DDKNFHLNVYVPPSIEGPEREVI-VETISNPVTLTCDATGIPPPTIAWLK-------NHKRIENSDSLEVRILSGGSKLQIARSQHSDSGNYTCIASNMEGKAQKYYFLSIQVPPSVAGAEI--PSDVSVLLGENVELVCNANGIPTPL-IQWLKDGKPIASGETERIRVSANGSTLNIYGALT------SDTGKYTCVATNPAGEEDRIFNLNV 3336 HSP 2 Score: 93.9745 bits (232), Expect = 2.625e-19 Identity = 175/777 (22.52%), Postives = 283/777 (36.42%), Query Frame = 2
Query: 299 YQCYGENNLGNVSDSFWVYVNCAPNVTATTLVQPSVTPAEGQSVTYTCTVEGFPKPTVTWQNDGVAMTTNVTEVSASNATGLWVVTSEIEIWWHRSHSGVIGCYATNGIGYADNETTNVFLTYQPEISLVALDRDTYELGGVEIFSTYVNDSVLLYCNITSYPQLVSSTAGPVRWFKDNVEITS----------NVIKFNESVIDNTFYYTTTSAIRIDPIEETENSKEYRCEASVSGFTSISKTIRVLVLNGMLTNVPDTPLCGALGDSIFFDWQYTYTQPYDDIVWEKYIDGNETVEFLVGKLQPTAPGLNMKNDTKYTYEASTKSGLYIHHIELSDEGYYGVKINFDNSAEVFHHVTYLTVVVNPHSMSITPNVATVYEQENITLTCTATGKPAPDLFWYFEDDWTTALTNTSDYLITDWSTDTVGNETIVTSDLTITSAGHQDVGNYSCGAKNKLTEKRIYRRVDVYY------APRNTTLNATVNPVHLLSTTLLQCDTDASTEPMYYLIYKDGSLV---------ANVTDGIYNISSVAYSDSGNYTCHPYNVMGFGDNATLALEVTAQPILDNYTSPVYGIKPLSSSLTCTFYGNPAPEITWTKLDGGVLYDNITTETIDKCVGTIVFKTSTVTFNPTELEHYGTYECSADNIYGTVQQNVSLIVHYAVNITRHTLIQEYDNHTTGDTNIVRKCTAVGYPGPLTIQWYLNSLPISRHSASQXXXXXXXXXXXXXXXXXMNTLDKDDLGTLMCLASNSIGTDNETTYFNVM 2554
Y C N G + + + V PN+ + + +T +G S + C +G P P++ W DG + + +++ L ++ +E E SG C A+N G E + F+ E + + E+ S VN+ + L C + P A + W KD + V++ + + +++T YT ++ ++ KEY V + + R + + L N T C + D++ P I W + + +LQ T P + + + +Y L I++ +L D Y + N A LTV V P+ + P + ++ L C A G P P + W D N + Y I + L I SA D G Y C A N R RR+D+ AP T + VN T L C+ +P K+G L+ ++ G I S + D+ Y C N G D T+ L V P + + + K + +TCT G P P I WTK G+ + + G + + + T+L H G Y C A N G+ ++V+L VH I Q + H + I+ C A G P P I W + ++ + V L ++ ++D GT MC+A N GT NV
Sbjct: 3411 YTCVASNRAGVDNKHYNLQVFAPPNMDNSMGTE-EITVLKGSSTSMACITDGTPAPSMAWLRDGQPLGLDAHLTVSTHGMVLQLLKAETE------DSGKYTCIASNEAG----EVSKHFILKVLEPPHINGSEEHEEI------SVIVNNPLELTCIASGIP------APKMTWMKDGRPLPQTDQVQTLGGGEVLRISTAQVEDTGRYTCLASS-----PAGDDDKEYLVRVHVPPNIAGTDEPRDITV---LRNRQVTLECKS--DAV----------PPPVITWLRNGE----------RLQAT-PRVRILSGGRY---------LQINNADLGDTANYTCVAS--NIAGKTTREFILTVNVPPN-IKGGPQSLVILLNKSTVLECIAEGVPTPRITW--RKDGAVLAGNHARYSILE------------NGFLHIQSAHVTDTGRYLCMATNAAGTDR--RRIDLQVHVPPSIAPGPTNMTVIVN-----VQTTLACEATGIPKPSINW-RKNGHLLNVDQNQNSYRLLSSGSLVIISPSVDDTATYECTVTNGAG-DDKRTVDLTVQVPPSIADEPTDFLVTKHAPAVITCTASGVPFPSIHWTK--NGI-------RLLPRGDGYRILSSGAIEILATQLNHAGRYTCVARNAAGSAHRHVTLHVHEPPVIQP----QPSELHVILNNPILLPCEATGTPSPF-ITWQKEGINVNTSGRNH--------AVLPSGGLQISRAVREDAGTYMCVAQNPAGTALGKIKLNVQ 4076 HSP 3 Score: 90.8929 bits (224), Expect = 2.224e-18 Identity = 163/732 (22.27%), Postives = 271/732 (37.02%), Query Frame = 2
Query: 422 QSVTYTCTVEGFPKPTVTWQNDGVAMTTNVTEVSASNATGLWVVTSEIEIWWHRSHSGVIGCYATNGIGYADNETTNVFLTYQPEISLVALDRDTYELGGVEIFSTYVNDSVLLYCNITSYPQLVSSTAGPVRWFKDNVEIT--SNVIKFNESVIDNTFYYTTTSAIRIDPIEETENSKEYRCEA-SVSGFTSISKTIRVLVLNGML-TNVPDTPLCGALGDSIFFDWQYTYTQPYDDIVWEKYIDGNETVEFLVGKLQPTAPGLNMKNDTKYTYEASTKSGLYIHHIELSDEGYYGVKINFDNSAEVFHHVTYLTVVVNP--HSMSITPNVATVYEQENITLTCTATGKPAPDLFWYFEDDWTTALTNTSDYLITDWSTDTVGNETIVTSDLTITSAGHQDVGNYSCGAKNKLTEKRIYRRVDVYYAPR-----NTTLNATVNPVHLLSTTLLQCDTDASTEPMYYLIYKDGSLVANVTDGI--------YNISSVAYSDSGNYTCHPYNVMGFGDNATLALEVTAQPILDNYTSPVYGIKPLSS--SLTCTFYGNPAPEITWTKLDGGVLYDNITTETIDKCVG-TIVFKTSTVTFNPTELEHYGTYECSADNIYGTVQQNVSLIVHYAVNITRHTLIQEYDNHTTGDTNIVRKCTAVGYPGPLTIQWYLNSLPISRHSASQXXXXXXXXXXXXXXXXXMNTLDKDDLGTLMCLASNSIGTDNETTYFNV 2551
Q + + C +G PKPT+ W ++G +T +S L V+ S +G C A N G + + Y ++ + + +D ++ V + +N L+C + P + + W+KDNV++T S + N I F T E++ Y C+A +++G + I VLV ++ TN P+ + L + + Q T P+ DI W K DG +G P + + + + L++ + +D+G Y + N+A LT+ + P ++T ++ +V I L C G P P + WY + + ++S L D L I A D Y+C N VDVY P T LN V H L+ L+C + P+ + KDG V D I I S D G Y C +V G + ++V P ++ Y I +++ L C G+P P I W K DG + ID+ G I+ + ++ + G Y C A N G ++ + VH I L + + +C A G P P +I W + P++ + + TL +D G C+A+N+ G + +V
Sbjct: 1282 QRIEFPCPAKGTPKPTIKWLHNGRELTGREPGISILEDGTLLVIASVTPY-----DNGEYICVAVNEAGTTERK-------YNLKVHVPPVIKDKEQVTNVSVL---LNQLTNLFCEVEGTPSPI------IMWYKDNVQVTESSTIQTVNNGKILKLFRAT------------PEDAGRYSCKAINIAGTSQKYFNIDVLVPPTIIGTNFPNE-VSVVLNRDVALECQVKGT-PFPDIHWFK--DGK---PLFLGD-----PNVELLDRGQV---------LHLKNARRNDKGRY--QCTVSNAAGKQAKDIKLTIYIPPSIKGGNVTTDI-SVLINSLIKLECETRGLPMPAITWYKDGQ---PIMSSSQALYIDKG-----------QYLHIPRAQVSDSATYTCHVANVAGTAEKSFHVDVYVPPMIEGNLATPLNKQVVIAHSLT---LECKAAGNPSPILTWL-KDGVPV-KANDNIRIEAGGKKLEIMSAQEIDRGQYICVATSVAGEKE-IKYEVDVLVPPAIEGGDETSYFIVMVNNLLELDCHVTGSPPPTIMWLK-DG---------QLIDERDGFKILLNGRKLVIAQAQVSNTGLYRCMAANTAGDHKKEFEVTVHVPPTIKSSGLSERV---VVKYKPVALQCIANGIPNP-SITWLKDDQPVNTAQGN------LKIQSSGRVLQIAKTL-LEDAGRYTCVATNAAGETQQHIQLHV 1915 HSP 4 Score: 88.1965 bits (217), Expect = 1.536e-17 Identity = 165/747 (22.09%), Postives = 274/747 (36.68%), Query Frame = 2
Query: 293 GHYQCYGENNLGNVSDSFWVYVNCAPNVTATTLVQPSVTPAEGQSVTYTCTVEGFPKPTVTWQNDG--VAMTTNVTEVSASNATGLWVVTSEIEIWWHRSHSGVIGCYATNGIGYADNETTNVFLTYQPEISLVALDRDTYELGGVEIFSTYVNDSVLLYCNITSYPQLVSSTAGPVRWFKDNVEITSNVIKFNESVIDNTFYYTTTSAIRIDPIEETENSKEYRCEA-SVSGFTSISKTIRVLV---LNG-----------MLTNVPDTPLCGALGDSIFFDWQYTYTQPYDDIVWEK---YIDGNETVEFLVGKLQPTAPGLNMKNDT--KYTYEASTKSGLYIHHIELSDEGYYGVKINFDNSAEVFHHVTYLTVVVNPHSM---SITPNVATVYEQENITLTCTATGKPAPDLFWYFEDDWTTALTNTSDYLITDWSTDTVGNETIVTSDLTITSAGHQDVGNYSCGAKNKLTEKRIYRRVDVYYAPR-----------NTTLNATVNPVHLLSTTLLQCDTDASTEPMYYLIYKDGSLVAN-----VTDG--IYNISSVAYSDSGNYTCHPYNVMGFGDNATLALEVTAQPILDNYTS----PVYGIKPLSSSLTCTFYGNPAPEITWTKLDGGVLYDNITTETIDKCVGTIVFKTSTVTFNPTELEHYGTYECSADNIYGTVQQNVSLIVHYAVNITRHTLIQEYDNHTTGDTNIVR-KCTAVGYPGPLTIQWYLNSLPIS 2389
G Y C N G + + V+ P++ +++ E SV+ TC G P P++TW DG V+++ +V +S L T E +G C N G + + + + P I + +T +E SV L C +T P + W KD + + +I + T+ + ++ Y C A S +G S S ++ V V + G ++ N P + +C A Y+ P I W K ++ N + L G T LN + D +Y+ A+ ++G I H Y VK+ Y+ ++N + ++P + +TL C A P+ L WY + L +D + N L I A D G Y+C A N E + V++ P +T N V + + L C+T+A+ P YKDG + + + G + I D+G YTC N G D+ + V PI+ S V + S+ + C G+PAP +W K DG L ++ + + G I+ + T++ G Y C A+N G+ ++ +L VH ++ + + +N T N + C G+P P + W N PI
Sbjct: 2359 GRYVCVAVNVAGMTDKKYDLSVHAPPSIIGNHRSPENISVVEKNSVSLTCEASGIPLPSITWFKDGWPVSLSNSVRILSGGRMLRLMQTTME--------DAGQYTCVVRNAAG-EERKIFGLSVLVPPHI----VGENT-----LEDVKVKEKQSVTLTCEVTGNP------VPEITWHKDGQPLQEDEAHH---IISGGRFLQITNV-------QVPHTGRYTCLASSPAGHKSRSFSLNVFVSPTIAGVGSDGNPEDVTVILNSPTSLVCEA------------YSYPPATITWFKDGTPLESNRNIRILPGGR--TLQILNAQEDNAGRYSCVATNEAGEMIKH--------YEVKV-------------YIPPIINKGDLWGPGLSPKEVKIKVNNTLTLECEAYAIPSASLSWYKD----------GQPLKSDDHVNIAAN----GHTLQIKEAQISDTGRYTCVASNIAGEDELDFDVNIQVPPSFQKLWEIGNMLDTGRNGEAKDVIINNPISLYCETNAAPPPTLTW-YKDGHPLTSSDKVLILPGGRVLQIPRAKVEDAGRYTCVAVNEAGE-DSLQYDVRVLVPPIIKGANSDLPEEVTVLVNKSALIECLSSGSPAPRNSWQK-DGQPLLEDDHHKFLSN--GRILQILN------TQITDIGRYVCVAENTAGSAKKYFNLNVHVPPSV----IGPKSENLTVVVNNFISLTCEVSGFPPP-DLSWLKNEQPIK 3006 The following BLAST results are available for this feature:
BLAST of TCONS_00064333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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