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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064331 ID=TCONS_00064331|Name=TCONS_00064331|organism=Clytia hemisphaerica|type=transcript|length=706bp
CTCGGATTCAAAGTCGGGTTCAACCTGGAAATTAGTAAGGACCTCAAACG
ATGAACAAGTTGTAGCCGACTGTTAGACCTTAAGCAGGAAAAAAGAGCAG
ACACGAGCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAG
ATTATCCATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAG
ATTGTAAACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttca
aactcagatGATGATGAACTGAAgcaatcatttcaaaaaattattaatgT
CTTAAAAAGTCAGTACTTTGGTGCTCTTCTAGatATTCAGGAGTATTATG
AGGAGATTTTGAAAGATGCCCATGAATCACCGGAGCAAGTGGAACGAGAG
GCGCAAGCACTTGCCAACAAATGGAATATCAACTCCTCTGATTGCTGAAA
CTTGCGGAAACCATTTCTAAGATCATtactagattttgtaattttttgta
aaaatcaaccagaattacTAATTTTTACTAATGTTGAATCTAGCTACTAA
TAATCATTCAAGTGAGATTCTCTCAATAATGCAGTAATATCTGAGAATGT
TATGAAATAACTTTTTATACACAGAATCTAAATGGATTTTACCTTTTTAT
TTAACATTCTTTTTTTAagttgtaaatatttttcaatcaataTTTCTAAC
ATATGC Run BLAST on NCBI transcript from alignment at scaffold_411:16403..25122+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064331 ID=TCONS_00064331|Name=TCONS_00064331|organism=Clytia hemisphaerica|type=transcript|length=8720bp|location=Sequence derived from alignment at scaffold_411:16403..25122+ (Clytia hemisphaerica)
CTCGGATTCAAAGTCGGGTTCAACCTGGAAATTAGTAAGGACCTCAAACG
ATGAACAAGTTGTAGCCGACTGTTAGACCTTAAGCAGGAAAAAAGAGCAG
ACACGAGCAGACAGCAGTAGTGAGGCTTGGCTTCTCCTCGTCAGATCCAG
ATTATCCATTTACATTAAGAAGAATATCATTATGTCACTCACAAGGAAAG
GTATATCACTATTCTTTTGTGTCTTCCAATAGTTTTGGATTtgaatattt
gaataaagacatgaaatacaccttttttgGCTTTGTTGTTGGTTTGCCTT
TCTGGGCTTTGTGTTGTGGGTTGGGACGTTATTGTTGGGAGAACGAACAG
TATTTCGAATAACTAGCTAATTACTCCAGCagaatatttttctaataatA
ACATCATACAATTGATTTGTATTTTACATACAACACAGCCTGACAGCTCT
GTTTAACTTAGATATATACAAGATATATAATATAGAGTCAGTTCGCCAGT
GCACGAACGAGCGTCTTTGAACtcgaaaaaaacaaccaaaaacaaacttc
tagagaacttcctttgtgcagcagaatcctcaaactattccttgcaatct
ctccaaaaattaaaataaacggagcactagatttttgtaaatatggcTGA
TCgcgagagaaaatgttttttataagaaaatttgcgcaagaagagttctg
aaaatgactttcctcttttaaaaaaaaaaaaacttttatcttctatcaca
caaaatttcattgaaacatgttagCTCATTAATTCAAAACCAATAGatag
aaacatatcaccagtagttgatataaaaaaggtccaaacaccatattcaa
aatgaagacagtgcaacgtcaaaacattcgaaagcgctggcgatctcaat
tcaaaaagaagacactacactgccgcgcttttcgatgagcaaaacttgaa
aaggaaaacaaaaaaatggacgacaagaaaatatttacaaaaataaacag
gttagtaaAACACTAAAGTTCTTATAAAAAAGACGCTTATTTAGTGAAAA
AGCGcgtggttttgaaaagttcaaatacccctgtatcatctcggaagaga
gttaaagtattacctgcgagcagagctctaattaattctttcaaaagatc
gttTGCAAACTGGTTCCTCGTTCGCGGACTGGGTTTGAATAGCGCTCCCT
TTAACgacttattattccaagaagaagctttcaaataaagtgaaaacaaa
ctgaaagaaggacttcaagcttgtttacgagatggtcaaaaaggatttat
gtaaaaaccaaaagtaagtgagaaaagtgaaaaataagtttACCGTTTGT
GCACTGGGCACCCCCATCTAATTTATCCTAATTTTGTATTGACCAGAGTA
ATTTTGTTTATAGTTGTTTTGTAGAACGCGACGCCGACGGCCTAttaaat
aacaaattactccacatactttacatcagtgtagacctaacttttcatac
aaaaattacgggaaacgcatgtttggactttgtaccctatgctgcacgtt
gctgcactcaagcactcaAGTCAAAGTCCCgaaaaggcgggacaaaaatc
agttttttgaagtttgcaaaaaaacgccacatagaagatctttcaaattc
agtatgtgaatagagcaataaaaaatacaactttttttgcaaaagttcta
ggaatgaaaataaagggataatgataattgaatacaatCCATTGATGAAC
Cgtggcactatcgtaaagctagaatcgttttgcgtactcttcgctttaag
aaaatgattgacagattgaagtttttcacccgcgcaggagttcgcggagc
gttctcggctcaatcctcggaccacgctaaaaatggtagactgagctgtg
atagatcatttcgatggaagttgttgggatgtttacaaggctcttgacag
aaaatcgtttgtgttattgtcaatgatgacagtgtggttattaattttgt
tagatctgacaaattgatgtttgtaagtgcactttatagtttggattccc
attgaagaatcataaaCTGGTTTTcctgttattagatgctgttttagagc
tttagagctacactgtaCATTACTTTTTTTCAGCCAATAAGAACGTGATA
AATTATTTTGTCACTAGGTTGTGGAGTaattaggggtcactcacaaatcg
attAATTAGGTTAGAAAAACGCTAATTGACGTTAGTGGGTGGATGGGTTA
AAGGTTGTTgacgttttttttcaaatccagAAACATCGATTTTCCATTCC
attttgtgaacaagtttagaaattatctctgtttcttttttttcaaatat
aaactatgcgagccgtagtgaagaaaatcaagatggctgacgaaacagcg
ATGAAGGCAGCTTTTCATCGATTTTCAGGGATTTCAGGTGTTTGACGTCA
TAGAGTGTAGGTGGGTGggtcagcttttaaaacgtcaatttacgtttttc
taacctaaaatcgatttgtgagtgaccccttaccTTATTACTACACAagt
attactagtcattttattaacacaaattgaaaagttttgtgttaataaaa
acccccttaattgaaaccacaatcatggtcaaaatctattgaaaaTTCAA
CTTATTTCCGCTTTTTTTTagatttggagttcgggcgagaaagtcgattt
tgggccatctctcaaatttaatcagatatttcaatttggctcgggtttat
agGCCTtcaggctatattatgagcctttttggaccatttttgaacttttg
gatcctcacatcataaggtcctaagtctttaGTCTtgtgttaaaactcta
cccttccaacctactttagaacacttacaaatcgattgtggttacaaaac
ttcccggtggatttcccttttttctcaaatattacgaccatgattgcagc
tgtggtgtccttgaaaaagcaaataaaatttgtgttaattttttgcatgt
tatttttaaggccgttgaatacttgcctaatAATATTAGTGTTATAAGGT
AGTTATTCAATAGGAAATCGAGCTCTCCAAACAAAACAACTATTGCATAG
GTTTTGCATATTCTCCTAGGCAGCGGTCACAAATAAGTTCTGTTTGCATA
AAAAGCGCTACGTAACTGCTTTTTGCGCTGTTGCAATATGCAAAATAATC
ACATTGCAGCTGGCGCAGGCTCGCGGGCTCGATAAGTCTTGTCGCCTGAA
CAAACCTATGCTCAGTCAGAGCGCATTTGCAGGATGTATTGAACAACAAG
GGAGAGTTACCTCAATCAAGATTCCAAGACAATTATATAACAGAAAAATT
GAAAGCTTGAAagcttgaaacaaaataaaacgtgcagtaACCAGCTAATC
AACCACAAAAGTTTGTCATTTAATCCTAAGGGAGTGCTTTGACTTGTTAG
GCCTTGATTACATGCTAAAGGTAGGGTGTAAACTGGAaccatgaaaaaat
actttttttggattttcaaaattgtcacaattttttatcaaaatttatca
tattgttAGACTTCTTGCGCAATTTTTAGGTCCATACGTCAAAAATCCAC
TGTTTGCCCCAGGGGTATCTGATTCGCGGTAGTAgtaaaaaacggcaaaa
atggcattttttgtccattttaagactataaaaggccaggaaatggtcaa
aatggtttctaaatgctgtcttgtactaatattcaacacaaaaagacaaa
aaaaccccagcgagatcgctcaatgtttcaatttcaggctaaaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATGGACCTcaaa
attgcgcaaaaagtcttacaatataataaattttgataaaaaattgtgac
aattttgaaactctaaaattcaaaatccagTTTACACCCTACTAAAGGAA
AAATAATTCTACACATGTTAAATGGAATGGGTTAGTGTTTGAGGTCTAGC
AAAATATTTCCCGGAAATAGCCTATCTGGTacctaccgtaagttggtcta
atatcgacattccccttctaattttgacacccttttttaaagataggaat
aatCAGAATGTTGGGatcgctgatggaaactatttttctttacttagcAA
TCatagaagaaaaatattttgtctatatATAAGTGATCcccaaccttcct
attattcctatctctaaagaaaggTGTCAGAATTGGAAGAgggattagac
caacttacagtatagTATGCGGATCTAGGTAGGTGTCTTCTCCCCTGTCT
TGTacatctttttcttgggaagatgttcttcaaattagttttgaaaTTAG
CTTGGTTCAAGTTCTTTCAATTATGAGACCCCccagattttttccaaatc
catacattcacgcaatgtttttcgAAAGTTATAGTTATACAATTTCTGCT
CACATAAAGCCTTCCAATCCATGAATTCAcgcaactttttaaaaatctta
acaAATTCACAAGTAATTCTGAGTAATTTGTAATAGTTCTTTaatgttat
aattttatttaaaagcaCCAGTTTATTTGTTCctaaatccctttagaagt
tttgcggggCTATCCTTTTGCTTGCAAGTCAAGTAAACAATAAAGCAGTT
TCACAGCATTAATTTTTGATACGCAATTCTGCGGAaccctagtgtgacta
actgacattATGATAAGAATTAGACACATGGAAATTGATCTACTATCTGG
CTATTTTGTGAGTCATTGCGTAGTGTTTTAATCGCTGGAGTCATAATGGT
ATTGCCCCTAGCATAAAGTCTATACCttttttacttttgatataagcagg
tcagaatcactgatagacaaaagatttttcctctgaGTGCTCAGCAAGGA
ATTATAGTTCCTATCAGCAATTCTGACCGCGTTTTATTCCAAACTCTAAg
tagggtgtcgaaattagatgaGGGGtgttgatattagaccaacttatggt
actAATGActccaaaaatctaaaaaaaggtAAATAACCTGACAGATGTCT
CAGTGTATGaccttaactttttgaatttttccatttATTAAAGAAATccc
agtttgcagagtgtggCACATTTGCTCGAGATCTCGAGTGCACAACACGG
GAAAAGTCGAGTgcaggtgcaaaatttgaggttttcaggtgcaagtgCAG
ACGGTTTTTTAACCCCAAGTGCAGAGTTCCACTATTTTCTTCTCAAGTGC
AACTAACTTTAGCAATGTTTTGCCTTTGTTGGGCCAATTTCCGAGGAGGT
GCACCTTTTCCGgacgccaaaatttatcaggtgcgCTCTTCCAGTGCAGA
ACTTGGTATTTCCGAATTTTTCCTCGAGTGCAGCCTTACCATACTCTGCA
AACTAAATCTAGTTCTGTCTTTACAAAGTGTCATTAGCTACACTTGTCTT
TAAATATATACAATACAACCCATTCTTTGTNGACAGATGTCTCAGTGTAT
GACCtgaactttttcaatttttccattTATTAAAGAAATCTAGTTCTGCC
TTTACAAAGTGTCATTAGCTACACTTGTCTTTAAATATATACAATACAAC
CCATTCTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGATTGTAAAC
AAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaactcagat
GATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCTTAAAAAG
TCAGTATTTTGGTGCTCTTCTAGGTAAATATGATTCGAATAttcgtttta
ttttgatttatctAAGACTTTTAATACTTTAGTAAGAAATTACCTTCCAT
GACATTTGCATTTTATATGCAAGTTTTCAGGCAgtaattatatgactgat
tGAAAAGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGAGGGAAGTAT
GATGGTTtgattccaattttttttggtgTGATGGCTGGTAGGGACAAAAT
TTGAGGACATTGTTTGATTTGGGCTATCTTTAATTTTNGACAGATGTCTC
AGTGTATGACCtgaactttttcaatttttccattTATTAAAGAAATCTAG
TTCTGCCTTTACAAAGTGTCATTAGCTACACTTGTCTTTAAATATATACA
ATACAACCCATTCTTTGTCTAAAAATTATCATCGTTTTTTATTTCTAGAT
TGTAAACAAGTATTGGTATTACTGGAGGATTacaacaacaaaatttcaaa
ctcagatGATGATGAACTGAAgcaatcatttcaaaaaattattaatgTCT
TAAAAAGTCAGTACTTTGGTGCTCTTCTAGGTAAATATGATTCGAATATT
CGTTTTATTTTGACTTATCTAAGACTTAGTATTAAAAGTAGTAAGAAATT
ACCTTCCATGACATTTGCATTTTATATGCAAGTTTTCAGGCAgtaattat
atgactgattGAAAAGTTCACCCAAGTGGCTTGGGTGAAGGCATAATTGA
GGGAAGTATGATGGTTtgattccaattttttttggtgTGATGGCTGGTAG
GGACAAAATTTGAGGACATTGTTTGATTTGGGctatctttaatttttttg
tatgaTAAAGGGTAATCCAAAATTACCCTCCAAACCCAAACCTGGTATTA
CTAACTAAAAATCACTTCACCTCAACGTcccattttttaaatctagatAT
TCAGGAGTATTATGAGGAGATTTTGAAAGATGCCCATGAATCACCGGAGC
AAGTGGAACGAGAGGCGCAAGCACTTGCCAACAAATGGAATATCAACTCC
TCTGATTGCTGAAACTTGCGGAAACCATTTCTAAGATCATtactagattt
tgtaattttttgtaaaaatcaaccagaattacTAATTTTTACTAATGTTG
AATCTAGCTACTAATAATCATTCAAGTGAGATTCTCTCAATAATGCAGTA
ATATCTGAGAATGTTATGAAATAACTTTTTATACACAGAATCTAAATGGA
TTTTACCTTTTTATTTAACATTCTTTTTTTAagttgtaaatatttttcaa
tcaataTTTCTAACATATGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064331-exon-scaffold_411-1491911889:16403..16602 | TCONS_00064331-exon-scaffold_411-1491911889:16403..16602 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1510915933:16403..16602 | TCONS_00064331-exon-scaffold_411-1510915933:16403..16602 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1575043694:16403..16602 | TCONS_00064331-exon-scaffold_411-1575043694:16403..16602 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1491911889:24251..24382 | TCONS_00064331-exon-scaffold_411-1491911889:24251..24382 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1510915933:24251..24382 | TCONS_00064331-exon-scaffold_411-1510915933:24251..24382 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1575043694:24251..24382 | TCONS_00064331-exon-scaffold_411-1575043694:24251..24382 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1491911889:24749..25122 | TCONS_00064331-exon-scaffold_411-1491911889:24749..25122 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1510915933:24749..25122 | TCONS_00064331-exon-scaffold_411-1510915933:24749..25122 | Clytia hemisphaerica | exon |
| TCONS_00064331-exon-scaffold_411-1575043694:24749..25122 | TCONS_00064331-exon-scaffold_411-1575043694:24749..25122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_411 | supercontig | scaffold_411:16403..25122 + |
Blast
The following BLAST results are available for this feature:
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