TCONS_00064329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064329
Unique NameTCONS_00064329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064329 ID=TCONS_00064329|Name=TCONS_00064329|organism=Clytia hemisphaerica|type=transcript|length=580bp
ACTTTTTGGTGAAAcaatgagaaaaatgaaaaatttaatttatttacaTA
AAAACTCTTGGAAGTTAACCAACATAGATGCTACAAAAACTAGCTGTGAT
GCCATTGGTACTAAATTCAGGGGAATTACCCTGTCTAAAagtctgaattt
ttttaaacgttCATTAAATCTTTCCGCGTGTATTCTAGCCTTGGCTATTC
TTTTAGTTAAAATTATTTCctgttttgtgaattttttccGTTTACCCAAG
AAGGGAGGGATAAAAATTGTTGCCTGCTTAGGAAGTAAAAGATGCTGAAT
TGTGAATCCTTTGTCAACAAGAAAAGAGTCTTTGCAGTTAACATGTTTTA
AAATACCACATTGATCAAAAATATCGACATCTGAAATACTGCCTTCATAC
AAATCTGATACAAAGCATGCAGCACCATTCGGGTTAACAGCTATCAAGCA
TTTCATAGTACAATGACTTTTGTAGCTTGAATACAAATGTCCCTGTTGCT
TATAGTCACGTGGTGTCTGACATTTAAATTCAGTACAATCAATGCTTGCC
CTAATCTTTTTGAATGGTCGAAAAACTTTT
Run BLAST on NCBI

protein sequence of TCONS_00064329-protein

>TCONS_00064329-protein ID=TCONS_00064329-protein|Name=TCONS_00064329-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
KVFRPFKKIRASIDCTEFKCQTPRDYKQQGHLYSSYKSHCTMKCLIAVNP
NGAACFVSDLYEGSISDVDIFDQCGILKHVNCKDSFLVDKGFTIQHLLLP
KQATIFIPPFLGKRKKFTKQEIILTKRIAKARIHAERFNERLKKFRLLDR
VIPLNLVPMASQLVFVASMLVNFQEFLCK
Run BLAST on NCBI

transcript from alignment at scaffold_410:234796..235375

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064329 ID=TCONS_00064329|Name=TCONS_00064329|organism=Clytia hemisphaerica|type=transcript|length=580bp|location=Sequence derived from alignment at scaffold_410:234796..235375 (Clytia hemisphaerica)
AAAAGTTTTTCGACCATTCAAAAAGATTAGGGCAAGCATTGATTGTACTG
AATTTAAATGTCAGACACCACGTGACTATAAGCAACAGGGACATTTGTAT
TCAAGCTACAAAAGTCATTGTACTATGAAATGCTTGATAGCTGTTAACCC
GAATGGTGCTGCATGCTTTGTATCAGATTTGTATGAAGGCAGTATTTCAG
ATGTCGATATTTTTGATCAATGTGGTATTTTAAAACATGTTAACTGCAAA
GACTCTTTTCTTGTTGACAAAGGATTCACAATTCAGCATCTTTTACTTCC
TAAGCAGGCAACAATTTTTATCCCTCCCTTCTTGGGTAAACggaaaaaat
tcacaaaacagGAAATAATTTTAACTAAAAGAATAGCCAAGGCTAGAATA
CACGCGGAAAGATTTAATGaacgtttaaaaaaattcagactTTTAGACAG
GGTAATTCCCCTGAATTTAGTACCAATGGCATCACAGCTAGTTTTTGTAG
CATCTATGTTGGTTAACTTCCAAGAGTTTTTAtgtaaataaattaaattt
ttcatttttctcattgTTTCACCAAAAAGT

Coding sequence (CDS) from alignment at scaffold_410:234796..235375

>TCONS_00064329 ID=TCONS_00064329|Name=TCONS_00064329|organism=Clytia hemisphaerica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_410:234796..235375 (Clytia hemisphaerica)
AAAGTTTTTCGACCATTCAAAAAGATTAGGGCAAGCATTGATTGTACTGA
ATTTAAATGTCAGACACCACGTGACTATAAGCAACAGGGACATTTGTATT
CAAGCTACAAAAGTCATTGTACTATGAAATGCTTGATAGCTGTTAACCCG
AATGGTGCTGCATGCTTTGTATCAGATTTGTATGAAGGCAGTATTTCAGA
TGTCGATATTTTTGATCAATGTGGTATTTTAAAACATGTTAACTGCAAAG
ACTCTTTTCTTGTTGACAAAGGATTCACAATTCAGCATCTTTTACTTCCT
AAGCAGGCAACAATTTTTATCCCTCCCTTCTTGGGTAAACggaaaaaatt
cacaaaacagGAAATAATTTTAACTAAAAGAATAGCCAAGGCTAGAATAC
ACGCGGAAAGATTTAATGaacgtttaaaaaaattcagactTTTAGACAGG
GTAATTCCCCTGAATTTAGTACCAATGGCATCACAGCTAGTTTTTGTAGC
ATCTATGTTGGTTAACTTCCAAGAGTTTTTAtgtaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040334XLOC_040334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064329-proteinTCONS_00064329-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064329-exon-scaffold_410-1491911889:234796..235375TCONS_00064329-exon-scaffold_410-1491911889:234796..235375Clytia hemisphaericaexon
TCONS_00064329-exon-scaffold_410-1510915933:234796..235375TCONS_00064329-exon-scaffold_410-1510915933:234796..235375Clytia hemisphaericaexon
TCONS_00064329-exon-scaffold_410-1575043694:234796..235375TCONS_00064329-exon-scaffold_410-1575043694:234796..235375Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:234796..235375 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.382509	0.466259	0.324823	0	1.03167	0.40762	0.61472	0.460395	0.322333	0	0.484417	0.70056	0.190796	0.264192	0.543004	0.116545	0.143574	0.0735794	0	0	0.184916	0.676466	0.219289	0.0996827	0.616025	0.916313	0.131124	0.139939	0.106139	0.108139
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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