TCONS_00064325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064325
Unique NameTCONS_00064325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length970

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064325 ID=TCONS_00064325|Name=TCONS_00064325|organism=Clytia hemisphaerica|type=transcript|length=970bp
CATAAACTAAAAACCCtttaaatatataattttttgaagCAAAGTTCGCC
TCTTATTATGATAAAGAAGaatcaacaaaagaatttctcaaaattcgTGT
CCGcacatttttgtttaaaaatattgtGCAAGCAAATAGCAGCAGATACT
ATGTTCATAAAAGATTCCTTAAAATGATACTAAGTGCAAAAATACTGTTT
GTATTAACCAGCAAAAAGATTTTGCTGTTCTTGCCAATTCTTTCAATGAA
TTGATGATGTGGTTAGGAGAGCCATCACCTGGCAAGCAAAAGGTCATGGA
AAACCTTTATTGTTTACCTTAGTGAGATTTGAGAAGCACACCAGTGAAAA
TATGTTTATTAAAAACTACAAAATAAAATGtgcaaattttgctttcaaaa
agAATCTTAATATTAGTTATAATTGCCTACTAATCAAATTGATCGACGTG
CACaatattttctctcaaaatcttATGATGTCCTTCAAATAAATAATCAG
CTTTAAATTTCTGGTTTTTAAATAGGAGTGGATACCATAGTTTATCATCA
GGCCACATCTTATCAAAAGGTACTTCATCAAAGCTGAACCATTTTGGTCT
CATTTCTTCTGATTCAGTCACAGCTCCTGAATATTTGTCACATCTGAACA
CTGTCACATCTAATAACACTGGATCGCCAACAAACTCAAATAACATGTGT
CCGATTTGATAATACTCTTCCATAACTAGCCCACACTCTTCTTGAGTTTC
TCGTTTAGCACATTCTGCAATGGACTCTCCTTCCTGTACCTTCCCGCCAA
AGCCATTCCACCAGCCCTCACCAAACCCTCTTTTCTTCATACCTAAAAGT
ACTTGTCTTTCAGCTTGTTTCACAATCATTATCAATGTTaacttcttcaa
tttttgattcattcttgattcttttttttaagcTGTTAAGCTCCACCTAA
AAGGGGTTTCAGAATCTTGA
Run BLAST on NCBI

protein sequence of TCONS_00064325-protein

>TCONS_00064325-protein ID=TCONS_00064325-protein|Name=TCONS_00064325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MNQKLKKLTLIMIVKQAERQVLLGMKKRGFGEGWWNGFGGKVQEGESIAE
CAKRETQEECGLVMEEYYQIGHMLFEFVGDPVLLDVTVFRCDKYSGAVTE
SEEMRPKWFSFDEVPFDKMWPDDKLWYPLLFKNQKFKADYLFEGHHKILR
ENIVHVDQFD
Run BLAST on NCBI

transcript from alignment at scaffold_410:104358..105327

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064325 ID=TCONS_00064325|Name=TCONS_00064325|organism=Clytia hemisphaerica|type=transcript|length=970bp|location=Sequence derived from alignment at scaffold_410:104358..105327 (Clytia hemisphaerica)
TCAAGATTCTGAAACCCCTTTTAGGTGGAGCTTAACAgcttaaaaaaaag
aatcaagaatgaatcaaaaattgaagaagttAACATTGATAATGATTGTG
AAACAAGCTGAAAGACAAGTACTTTTAGGTATGAAGAAAAGAGGGTTTGG
TGAGGGCTGGTGGAATGGCTTTGGCGGGAAGGTACAGGAAGGAGAGTCCA
TTGCAGAATGTGCTAAACGAGAAACTCAAGAAGAGTGTGGGCTAGTTATG
GAAGAGTATTATCAAATCGGACACATGTTATTTGAGTTTGTTGGCGATCC
AGTGTTATTAGATGTGACAGTGTTCAGATGTGACAAATATTCAGGAGCTG
TGACTGAATCAGAAGAAATGAGACCAAAATGGTTCAGCTTTGATGAAGTA
CCTTTTGATAAGATGTGGCCTGATGATAAACTATGGTATCCACTCCTATT
TAAAAACCAGAAATTTAAAGCTGATTATTTATTTGAAGGACATCATaaga
ttttgagagaaaatattGTGCACGTCGATCAATTTGATTAGTAGGCAATT
ATAACTAATATTAAGATTctttttgaaagcaaaatttgcaCATTTTATTT
TGTAGTTTTTAATAAACATATTTTCACTGGTGTGCTTCTCAAATCTCACT
AAGGTAAACAATAAAGGTTTTCCATGACCTTTTGCTTGCCAGGTGATGGC
TCTCCTAACCACATCATCAATTCATTGAAAGAATTGGCAAGAACAGCAAA
ATCTTTTTGCTGGTTAATACAAACAGTATTTTTGCACTTAGTATCATTTT
AAGGAATCTTTTATGAACATAGTATCTGCTGCTATTTGCTTGCacaatat
ttttaaacaaaaatgtgCGGACAcgaattttgagaaattcttttgttgat
tCTTCTTTATCATAATAAGAGGCGAACTTTGcttcaaaaaattatatatt
taaaGGGTTTTTAGTTTATG

Coding sequence (CDS) from alignment at scaffold_410:104358..105327

>TCONS_00064325 ID=TCONS_00064325|Name=TCONS_00064325|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_410:104358..105327 (Clytia hemisphaerica)
atgaatcaaaaattgaagaagttAACATTGATAATGATTGTGAAACAAGC
TGAAAGACAAGTACTTTTAGGTATGAAGAAAAGAGGGTTTGGTGAGGGCT
GGTGGAATGGCTTTGGCGGGAAGGTACAGGAAGGAGAGTCCATTGCAGAA
TGTGCTAAACGAGAAACTCAAGAAGAGTGTGGGCTAGTTATGGAAGAGTA
TTATCAAATCGGACACATGTTATTTGAGTTTGTTGGCGATCCAGTGTTAT
TAGATGTGACAGTGTTCAGATGTGACAAATATTCAGGAGCTGTGACTGAA
TCAGAAGAAATGAGACCAAAATGGTTCAGCTTTGATGAAGTACCTTTTGA
TAAGATGTGGCCTGATGATAAACTATGGTATCCACTCCTATTTAAAAACC
AGAAATTTAAAGCTGATTATTTATTTGAAGGACATCATaagattttgaga
gaaaatattGTGCACGTCGATCAATTTGATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040330XLOC_040330Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064325-proteinTCONS_00064325-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064325-exon-scaffold_410-1491911889:104358..105327TCONS_00064325-exon-scaffold_410-1491911889:104358..105327Clytia hemisphaericaexon
TCONS_00064325-exon-scaffold_410-1510915933:104358..105327TCONS_00064325-exon-scaffold_410-1510915933:104358..105327Clytia hemisphaericaexon
TCONS_00064325-exon-scaffold_410-1575043694:104358..105327TCONS_00064325-exon-scaffold_410-1575043694:104358..105327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:104358..105327 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.25384	2.47414	3.77555	4.61711	4.48839	3.67073	2.1657	3.7011	2.05284	2.74558	3.69248	1.76706	3.28757	1.86211	0.345164	0.402874	0.770102	0.40388	0.324393	0.587226	0.0614516	0.488477	1.16734	1.23239	6.20705	5.2047	1.1489	0.15504	0.832708	0.310645
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003563OxG-triPHTase
IPR000086NUDIX_hydrolase_dom
IPR020084NUDIX_hydrolase_CS
IPR015797NUDIX_hydrolase_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:00084138-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0008413 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
molecular_function GO:0016787 hydrolase activity
Blast
[Close]
BLAST of TCONS_00064325 vs. Swiss-Prot (Human)
Match: 8ODP (7,8-dihydro-8-oxoguanine triphosphatase OS=Homo sapiens GN=NUDT1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 2.049e-39
Identity = 79/152 (51.97%), Postives = 105/152 (69.08%), Query Frame = -2 
Query:  442 KKLTLIMIVKQAERQVLLGMKKRXXXXXXXXXXXGKVQEGESIAECAKRETQEECGLVMEEYYQIGHMLFEFVGDPVLLDVTVFRCDKYSGAVTESEEMRPKWFSFDEVPFDKMWPDDKLWYPLLFKNQKFKADYLFEGHHKILRENIVHVD 897
             +L  +++V Q +R VLLGMKKRGFG G WNGFGGKVQEGE+I + A+RE QEE GL ++  +++G ++FEFVG+P L+DV VF  D   G   ES+EMRP WF  D++PF  MWPDD  W+PLL + +KF   + F+G   IL   +  VD
Sbjct:   45 SRLYTLVLVLQPQR-VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDDSYWFPLLLQKKKFHGYFKFQGQDTILDYTLREVD 195
The following BLAST results are available for this feature:
BLAST of TCONS_00064325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
8ODP2.049e-3951.977,8-dihydro-8-oxoguanine triphosphatase OS=Homo sa... [more]
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