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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064320 ID=TCONS_00064320|Name=TCONS_00064320|organism=Clytia hemisphaerica|type=transcript|length=1904bp
AAAAGATGAGGTAGCAAAAGAAAAATGGTGAGAAACAACAGATGCTATCA
TAATTAAAAAGGTTGCCAGGCAGGGCATGTTCAAAGTCTCTATGATAAAG
CTAACGATGCAACgagttttctataagaacaattcaCAGTTTGACACTAA
AAACAGATAATCGAAATGCACCTAAACAATTGTATTTCGAGGAACTCGAA
ATTTGATGGAAACAAACTTTACTATGAAGGCAACGTTCCATATTCCACAT
AGCATCTTGATTGGATGAGAAAGCAAAGTCGTAGATAGTTAATTTGATAA
CTATCTCTTTGATAGAAACAAATTAGAGATGCCACATGGTCAAAAGCATG
ATCCATTGATTTGAAGCTTTTGTTTGACATTGGGGAATCTCCTTTTTCCG
TGTCTTAAAAAATGAGACAGTTGACAGATGGTGCAGCGATTACTCCCTGA
TTAAACAGTGATTAACGATTACCATAAATATATAACTACTGATCGATAAA
AATACATTTATCGACGATTGcatgtaataaaaattaaaaagtttgcaAGA
AACTGGGTCACTGTGGTTAATAACAAAAGTTCATAAAATACTGttttaaa
aaggtttgttaTTAAAAGTTGAACTTCCAACTTCAAGTCAAAAACAAGAC
TCCTTGACCATTAATCCAATTCCAAAAGGTACTAGTCCACACTGTTATTT
TTCTCAGCCTGTCTGTAATGTCAAACATTAAAGATCTCGCTGAAAACTAA
AGTTTGTACTGCGTGAATTATTACAACCTACTGTAATAAAACAAGATTGT
GATCAGCTATATGAAACAACTAACCCTTTATATTTCAAGAGATATTTTCT
TAATCTACAACCAACACAAGACGCAAAATAGACGAAGGGCTTAAAACATT
AACTCTCTAAATTATAACGAACGTTTTCTTTCGTGAAGGGctgtttcata
aaaaaatgtgaGAAGATTAAAGTCTAGTATAAGATAAGACGAACTCAAAA
ATTGAAAGATAGAAAAAAACATTACGTTGAACATAAAAACCACAACAAAG
ACGAAAAATTTCTAGCTTGTGTTTTGAGAGTACATtcgagtctccataac
tcgaacacgtacggggaacacaaatttgcttaagttaaaggaaatttcga
gtatTGGAGTAAGCTTTAAAAGGCATTTTTAACTGAGGGTGAAGAAAACT
TTTCGatttaaagagactctactgtatcaGGAATAAACCAAAGCCAAATT
TAATTCACCAGTCCAATaaacaattgaaaaaagaattgtaattgaataaa
aacatgaaagttATTAAAAACAGCAAAGGGGGCGCCTCAAAAGCCTAACT
ACTAAAACATATTTtccagtttttgtttttttgtaaaataaacctgaact
ttctataattcgaattcaATCAATCCTAATTTCCATATTCAGATTGTACA
ACCTCGGCTCGAAGTTTCTaacagaaaacaaaaaaggCAAATCCAACATG
AAAAACCACACTAATTGATCATATTACTAACAAAAATCTCGTCAAAGTCG
AAAATCTTTATAATGACAAAATACTTATGTTGCGTAAAAACAATACAAAA
TCCACTTGATTTTTAATGAAAGGTCCAAACTACCGTCTGCAAAATAAATC
TGCCACGCTTGCAAATATTGACCTGCGAGGGAGAACTTCACCCATCAATT
TGACATTCTCTATAAAAGATATGCAACTTCTCCATTGTGGTTTCATTTGT
CGTGATTAATTTCCAAAAGTGTCATGCCGAGCATAAAAGAGAAAGGAAAT
TTCGAAATTCAATACAATGCAACGACATATTAAACCACGAAAGTCTGTAC
AGTATAACACTGTAATTTCATCAAGTGACACATAACATTTTAATCTAAAA
ACCT Run BLAST on NCBI transcript from alignment at scaffold_410:81960..83863 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064320 ID=TCONS_00064320|Name=TCONS_00064320|organism=Clytia hemisphaerica|type=transcript|length=1904bp|location=Sequence derived from alignment at scaffold_410:81960..83863 (Clytia hemisphaerica)
AGGTTTTTAGATTAAAATGTTATGTGTCACTTGATGAAATTACAGTGTTA
TACTGTACAGACTTTCGTGGTTTAATATGTCGTTGCATTGTATTGAATTT
CGAAATTTCCTTTCTCTTTTATGCTCGGCATGACACTTTTGGAAATTAAT
CACGACAAATGAAACCACAATGGAGAAGTTGCATATCTTTTATAGAGAAT
GTCAAATTGATGGGTGAAGTTCTCCCTCGCAGGTCAATATTTGCAAGCGT
GGCAGATTTATTTTGCAGACGGTAGTTTGGACCTTTCATTAAAAATCAAG
TGGATTTTGTATTGTTTTTACGCAACATAAGTATTTTGTCATTATAAAGA
TTTTCGACTTTGACGAGATTTTTGTTAGTAATATGATCAATTAGTGTGGT
TTTTCATGTTGGATTTGccttttttgttttctgttAGAAACTTCGAGCCG
AGGTTGTACAATCTGAATATGGAAATTAGGATTGATtgaattcgaattat
agaaagttcaggtttattttacaaaaaaacaaaaactggaAAATATGTTT
TAGTAGTTAGGCTTTTGAGGCGCCCCCTTTGCTGTTTTTAATaactttca
tgtttttattcaattacaattcttttttcaattgtttATTGGACTGGTGA
ATTAAATTTGGCTTTGGTTTATTCCtgatacagtagagtctctttaaatC
GAAAAGTTTTCTTCACCCTCAGTTAAAAATGCCTTTTAAAGCTTACTCCA
atactcgaaatttcctttaacttaagcaaatttgtgttccccgtacgtgt
tcgagttatggagactcgaATGTACTCTCAAAACACAAGCTAGAAATTTT
TCGTCTTTGTTGTGGTTTTTATGTTCAACGTAATGTTTTTTTCTATCTTT
CAATTTTTGAGTTCGTCTTATCTTATACTAGACTTTAATCTTCtcacatt
tttttatgaaacagCCCTTCACGAAAGAAAACGTTCGTTATAATTTAGAG
AGTTAATGTTTTAAGCCCTTCGTCTATTTTGCGTCTTGTGTTGGTTGTAG
ATTAAGAAAATATCTCTTGAAATATAAAGGGTTAGTTGTTTCATATAGCT
GATCACAATCTTGTTTTATTACAGTAGGTTGTAATAATTCACGCAGTACA
AACTTTAGTTTTCAGCGAGATCTTTAATGTTTGACATTACAGACAGGCTG
AGAAAAATAACAGTGTGGACTAGTACCTTTTGGAATTGGATTAATGGTCA
AGGAGTCTTGTTTTTGACTTGAAGTTGGAAGTTCAACTTTTAAtaacaaa
cctttttaaaaCAGTATTTTATGAACTTTTGTTATTAACCACAGTGACCC
AGTTTCTtgcaaactttttaatttttattacatgCAATCGTCGATAAATG
TATTTTTATCGATCAGTAGTTATATATTTATGGTAATCGTTAATCACTGT
TTAATCAGGGAGTAATCGCTGCACCATCTGTCAACTGTCTCATTTTTTAA
GACACGGAAAAAGGAGATTCCCCAATGTCAAACAAAAGCTTCAAATCAAT
GGATCATGCTTTTGACCATGTGGCATCTCTAATTTGTTTCTATCAAAGAG
ATAGTTATCAAATTAACTATCTACGACTTTGCTTTCTCATCCAATCAAGA
TGCTATGTGGAATATGGAACGTTGCCTTCATAGTAAAGTTTGTTTCCATC
AAATTTCGAGTTCCTCGAAATACAATTGTTTAGGTGCATTTCGATTATCT
GTTTTTAGTGTCAAACTGtgaattgttcttatagaaaactcGTTGCATCG
TTAGCTTTATCATAGAGACTTTGAACATGCCCTGCCTGGCAACCTTTTTA
ATTATGATAGCATCTGTTGTTTCTCACCATTTTTCTTTTGCTACCTCATC
TTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064320-exon-scaffold_410-1491911889:81960..83863 | TCONS_00064320-exon-scaffold_410-1491911889:81960..83863 | Clytia hemisphaerica | exon |
| TCONS_00064320-exon-scaffold_410-1510915933:81960..83863 | TCONS_00064320-exon-scaffold_410-1510915933:81960..83863 | Clytia hemisphaerica | exon |
| TCONS_00064320-exon-scaffold_410-1575043694:81960..83863 | TCONS_00064320-exon-scaffold_410-1575043694:81960..83863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_410 | supercontig | scaffold_410:81960..83863 . |
Blast
The following BLAST results are available for this feature:
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