TCONS_00064319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064319
Unique NameTCONS_00064319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064319 ID=TCONS_00064319|Name=TCONS_00064319|organism=Clytia hemisphaerica|type=transcript|length=240bp
acatttctatttttcagTAATTCGTCAATGTCCGAACTCCACCAACTTTG
AATGTAAGACTGGGAAGAATTGTATTGTTAAAGAATGGAAATGCGATGGT
GAAAAGGATTGCGTGGATGGAAGCGATGAAGAAAATTGTAAATGAAAAAG
ATGATGACATTTTGAtgtttgttcttaggttttctTGTttattacacccc
cttctcacagatccggtaGGATTTTATcagtcagtgggga
Run BLAST on NCBI

transcript from alignment at scaffold_410:50223..50462

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064319 ID=TCONS_00064319|Name=TCONS_00064319|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_410:50223..50462 (Clytia hemisphaerica)
tccccactgactgATAAAATCCtaccggatctgtgagaagggggtgtaat
aaACAagaaaacctaagaacaaacaTCAAAATGTCATCATCTTTTTCATT
TACAATTTTCTTCATCGCTTCCATCCACGCAATCCTTTTCACCATCGCAT
TTCCATTCTTTAACAATACAATTCTTCCCAGTCTTACATTCAAAGTTGGT
GGAGTTCGGACATTGACGAATTActgaaaaatagaaatgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040325XLOC_040325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064319-exon-scaffold_410-1491911889:50223..50462TCONS_00064319-exon-scaffold_410-1491911889:50223..50462Clytia hemisphaericaexon
TCONS_00064319-exon-scaffold_410-1510915933:50223..50462TCONS_00064319-exon-scaffold_410-1510915933:50223..50462Clytia hemisphaericaexon
TCONS_00064319-exon-scaffold_410-1575043694:50223..50462TCONS_00064319-exon-scaffold_410-1575043694:50223..50462Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:50223..50462 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.69834	1.75421	3.0552	0	2.42591	0	1.15638	0	1.51589	1.87768	0.91126	2.99513	1.79458	3.10615	1.02147	1.64429	43.2135	87.8929	4.78066	2.00105	37.3944	35.631	3.09386	1.87518	1.93139	1.72372	0	3.9487	1.99663	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top