TCONS_00064317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064317
Unique NameTCONS_00064317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064317 ID=TCONS_00064317|Name=TCONS_00064317|organism=Clytia hemisphaerica|type=transcript|length=397bp
aagctctcaaaattttccaatttcgcTTGATTCTTTATGCATCTAGTCCT
TCCTTCCATCGCAGCTACTTAATATCTTTGCAAGCTATCCAACTAATAAT
CTAGCTATATTGGCTGActttccagcctcggctggtttattcacaattag
aataggcagagCAAAAACTGAGCCGTCTAGATCACAGCTTACATCATCCT
TTACTTAATAATTGAAAAATACAACTTCTTGACAATAAGGGGTTAACTAC
TGGTCGACGAAGTTCATATGATAGACATACCTCTGCTATGGAACACTTTT
TAAAAGCAATTCAAGTAGTAAGCATGCATAATTTGTTTTACCGCAATAAA
CTTCACAACACTTTGATGAAATTTGCGCGTGGAAAAAGTTGGCAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_410:28285..28681

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064317 ID=TCONS_00064317|Name=TCONS_00064317|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_410:28285..28681 (Clytia hemisphaerica)
TTCTGCCAACTTTTTCCACGCGCAAATTTCATCAAAGTGTTGTGAAGTTT
ATTGCGGTAAAACAAATTATGCATGCTTACTACTTGAATTGCTTTTAAAA
AGTGTTCCATAGCAGAGGTATGTCTATCATATGAACTTCGTCGACCAGTA
GTTAACCCCTTATTGTCAAGAAGTTGTATTTTTCAATTATTAAGTAAAGG
ATGATGTAAGCTGTGATCTAGACGGCTCAGTTTTTGctctgcctattcta
attgtgaataaaccagccgaggctggaaagTCAGCCAATATAGCTAGATT
ATTAGTTGGATAGCTTGCAAAGATATTAAGTAGCTGCGATGGAAGGAAGG
ACTAGATGCATAAAGAATCAAgcgaaattggaaaattttgagagctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040323XLOC_040323Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064317-exon-scaffold_410-1491911889:28285..28681TCONS_00064317-exon-scaffold_410-1491911889:28285..28681Clytia hemisphaericaexon
TCONS_00064317-exon-scaffold_410-1510915933:28285..28681TCONS_00064317-exon-scaffold_410-1510915933:28285..28681Clytia hemisphaericaexon
TCONS_00064317-exon-scaffold_410-1575043694:28285..28681TCONS_00064317-exon-scaffold_410-1575043694:28285..28681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:28285..28681 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636865	0	0	0.660172	1.52693	0.804399	2.42618	1.86938	0.502866	1.37883	0.76476	1.38249	1.63158	2.08543	0.535783	0.963273	0.3383	0.290404	1.47993	1.25951	0.771871	0.266988	0.216373	0.393429	1.21567	0.180826	0.517522	0.828469	0.214708	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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