|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064313 ID=TCONS_00064313|Name=TCONS_00064313|organism=Clytia hemisphaerica|type=transcript|length=8670bp protein sequence of TCONS_00064313-protein >TCONS_00064313-protein ID=TCONS_00064313-protein|Name=TCONS_00064313-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1517bp MAQGSDQEVALRMELQNQINVLTHENQHYQNEYESLRQGWIKNQQETSTYRun BLAST on NCBI transcript from alignment at scaffold_410:192932..212538- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064313 ID=TCONS_00064313|Name=TCONS_00064313|organism=Clytia hemisphaerica|type=transcript|length=19607bp|location=Sequence derived from alignment at scaffold_410:192932..212538- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_410:192932..212538- >TCONS_00064313 ID=TCONS_00064313|Name=TCONS_00064313|organism=Clytia hemisphaerica|type=CDS|length=59202bp|location=Sequence derived from alignment at scaffold_410:192932..212538- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064313 vs. Swiss-Prot (Human)
Match: TRIPB (Thyroid receptor-interacting protein 11 OS=Homo sapiens GN=TRIP11 PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 4.922e-33 Identity = 123/403 (30.52%), Postives = 217/403 (53.85%), Query Frame = 3
Query: 6294 FE-NSKKEKAF-IDQLLREKGTLET-ERNEL------------VFQ--RDQLTNRLQEQDVE---LKHXXXXXXXXXXXXXRELERLRNHLMMIEENHTKDILECQQREDTLRAELDEARETLGKKSIILQDSSKQFQEHVGTLEEQLHTIAAQRDANTFELDKSKHQIERDASAIYNLQNALEQLQREKDEQY-------EYLVSVDQKKVQNYESRIDELMQEQEKSQVAMSEASLAVQGIAKLNLELEQKD---RELQASNEKAVELSTSLQERDMQYNKILQASDGKMEKSLIRNLLEKYFQAPEDKRGDIVKVIGGLLGMSHDQIKQI---GTGAAPSKVGGWISNVWGYAATPSKKENEQAANRPPVDPNQ------SFSEMFIKFLEHESTNRQPP 7385
FE +S KEKA +QLL+EK +T E N+L VFQ RDQ+ L+++ +E L++ ++ E ++ +ELERLRNHL+ E+++T++ L + RE LR ++ E L S ++++S Q V +L+EQL+ ++ QRD +L S+ Q+++ A ++ NLQ LE Q+E+ Y + L++ +K +N E ++ L Q + EA+ A+ ++L +L+ K+ EL+ NE E+ +Q++ M + +S+GK++K L+RNL +F P+++R ++++++G +LG+ ++++Q+ G + GW+ G + P+ P+ PNQ SFSE+F+KFLE ES PP
Sbjct: 1498 FECHSMKEKALAFEQLLKEKEQGKTGELNQLLNAVKSMQEKTVVFQQERDQVMLALKQKQMENTALQNEVQRLRDKEFRSNQELERLRNHLLESEDSYTREALAAEDREAKLRKKVTVLEEKLVSSSNAMENASHQASVQVESLQEQLNVVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQKQLIAEWKKNAENLEGKVISL-------QECLDEANAALDSASRLTEQLDVKEEQIEELKRQNELRQEMLDDVQKKLM---SLANSSEGKVDKVLMRNLFIGHFHTPKNQRHEVLRLMGSILGVRREEMEQLFHDDQGGVTRWMTGWLGG--GSKSVPN----------TPLRPNQQSVVNSSFSELFVKFLETESHPSIPP 1878 The following BLAST results are available for this feature:
BLAST of TCONS_00064313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.